FvH4_3g40830

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016133
Physical Location & Seq
Reverse (-)
34392022 .. 34392792
771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40830.t1

Sequence Viewer

Length: 771 bp
ATGAGGGATGACAGGTTGGGATCTTTGCCAGCCCCTCCCGGCAGCGCCAAGTCAAAGCACAGCAGCAGCAGGGCCAGTGCACGCCATGTTGCCTTCTCGGAAACTTCTGCAGCTCCGAGCACCAACCGTGACGATGGAGCCTTCTTCCCCCCACCAGATTTAGATGGAGAACGTCCGAAACGCCTCCGGCCACGTGCCTATGCATGCTGTGCATGGGGATGCATGTTCATTTTCGCCTTCGTCCTCCTCGCCCTCATCTTAGGTTTTGTGTTCGTCTCCATCTTCCATTCTTACTTGCCTGTAATCCGGGTCCGGCGGTTCAATGCAACCAAGATCGAGTTTGGCAAACCGAATAATCAGCACAAGGTGAGCTTGAAGGGAAAAGTAGATTTGCTAGTGGAGATTAATAACCAGAACGAGAAAACCGAGCTCAAATTCGGGATGTTCAAAGTGAGTGCTTCTACTTCCAATCTCAATCTGGGTAACACCGAGTTTAAGGCATTTACTCAGCCAACGAAATCGTCGAAATCACTGAACACAACCATTGGGGTTAACAATTCCGGGGTTGATAAAGATGACGCAGAGCAACTGAAACAAGATATTCAAAACCATGAATTTGAGCTGCAACTGAACATGGTCGGAAGTGTTAGCTTCCCGATCTCAGGGATTAATATGAATCAGATTCCGATCATAGCGTCATGTGATTGCAAACAAACGGAAGTTGATTTTGGGAAGAATGCAAGGTGTAATTATCGGATTTTCAAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

257

Amino Acids

28.39

Weight (kDa)

9.33

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30505
fragaria_vesca FvH4_3g40830
malus_domestica MD03G1049700.v1.1 MD11G1051900.v1.1
prunus_persica Prupe.6G039500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073561
rosa_laevigata RLG00000036395
rosa_multiflora Rmu_ssc0000226.1_g000002
rosa_roxburghii Rroxscaffold_1G00007720
rosa_rugosa Rorug05G0424800
rosa_samantha Rh5AG481900 Rh5BG502600 Rh5CG525700 Rh5DG514800
rosa_wichuraiana Rw5G044760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 2 cut(s) 434, 614
AcvI CACGTG 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 5 cut(s) 322, 376, 448, 605, 763
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
AluBI AGCT 5 cut(s) 113, 372, 430, 622, 651
AluI AGCT 5 cut(s) 113, 372, 430, 622, 651
Alw21I GWGCWC 3 cut(s) 82, 122, 432
Alw26I GTCTC 1 cut(s) 280
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 1 cut(s) 28
AoxI GGCC 2 cut(s) 72, 188
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 5 cut(s) 42, 63, 66, 110, 622
ApoI RAATTY 2 cut(s) 434, 614
AseI ATTAAT 2 cut(s) 405, 669
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 72, 310
AsuC2I CCSGG 3 cut(s) 39, 308, 562
AsuHPI GGTGA 1 cut(s) 379
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 432
BbrPI CACGTG 1 cut(s) 194
Bbv12I GWGCWC 3 cut(s) 82, 122, 432
BbvI GCAGC 5 cut(s) 54, 75, 78, 122, 609
BccI CCATC 3 cut(s) 128, 158, 287
BcnI CCSGG 3 cut(s) 39, 308, 562
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 48
BisI GCNGC 5 cut(s) 43, 64, 67, 111, 623
BlsI GCNGC 5 cut(s) 44, 65, 68, 112, 624
Bme1390I CCNGG 3 cut(s) 39, 308, 562
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 72, 310
BmiI GGNNCC 2 cut(s) 139, 311
BmrFI CCNGG 3 cut(s) 39, 308, 562
BmsI GCATC 1 cut(s) 209
BpuMI CCSGG 3 cut(s) 39, 308, 562
BsaAI YACGTR 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 686
BsaJI CCNNGG 1 cut(s) 561
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 686
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 3 cut(s) 13, 224, 447
BseJI GATNNNNATC 1 cut(s) 686
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMII CTCAG 2 cut(s) 521, 675
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 5 cut(s) 54, 75, 78, 122, 609
BshFI GGCC 2 cut(s) 74, 190
BsiHKAI GWGCWC 3 cut(s) 82, 122, 432
BsiSI CCGG 5 cut(s) 39, 187, 307, 313, 561
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 2 cut(s) 74, 190
Bsp1286I GDGCHC 3 cut(s) 82, 122, 432
Bsp143I GATC 4 cut(s) 20, 333, 657, 687
BspACI CCGC 1 cut(s) 316
BspANI GGCC 2 cut(s) 74, 190
BspCNI CTCAG 2 cut(s) 520, 674
BspLI GGNNCC 2 cut(s) 139, 311
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 4 cut(s) 20, 333, 657, 687
Bst4CI ACNGT 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 209
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 30, 82, 205
BstDEI CTNAG 3 cut(s) 259, 507, 661
BstF5I GGATG 3 cut(s) 13, 224, 447
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 4 cut(s) 23, 336, 660, 690
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 20, 333, 657, 687
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 2 cut(s) 207, 226
BstSCI CCNGG 3 cut(s) 37, 306, 560
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 5 cut(s) 54, 75, 78, 122, 609
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 2 cut(s) 74, 190
BtsCI GGATG 3 cut(s) 13, 224, 447
BtsIMutI CAGTG 2 cut(s) 82, 530
Cac8I GCNNGC 3 cut(s) 30, 82, 205
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 72, 310
CseI GACGC 2 cut(s) 587, 684
CviAII CATG 7 cut(s) 86, 204, 213, 223, 611, 634, 699
DdeI CTNAG 3 cut(s) 259, 507, 661
DpnI GATC 4 cut(s) 22, 335, 659, 689
DpnII GATC 4 cut(s) 20, 333, 657, 687
DraIII CACNNNGTG 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 430
Eco72I CACGTG 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 430
EcoT22I ATGCAT 2 cut(s) 205, 224
EcoT38I GRGCYC 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 7 cut(s) 89, 207, 216, 226, 614, 637, 702
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FatI CATG 7 cut(s) 85, 203, 212, 222, 610, 633, 698
Fnu4HI GCNGC 5 cut(s) 43, 64, 67, 111, 623
FokI GGATG 3 cut(s) 20, 231, 454
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 5 cut(s) 43, 64, 67, 111, 623
FspBI CTAG 1 cut(s) 395
GlaI GCGC 1 cut(s) 46
GluI GCNGC 5 cut(s) 43, 64, 67, 111, 623
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 2 cut(s) 74, 190
HapII CCGG 5 cut(s) 39, 187, 307, 313, 561
HgaI GACGC 2 cut(s) 587, 684
HhaI GCGC 1 cut(s) 47
Hin1II CATG 7 cut(s) 89, 207, 216, 226, 614, 637, 702
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 2 cut(s) 676, 682
HpaI GTTAAC 1 cut(s) 553
HpaII CCGG 5 cut(s) 39, 187, 307, 313, 561
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 80, 553
Hpy188I TCNGA 7 cut(s) 100, 117, 177, 641, 681, 687, 756
Hpy188III TCNNGA 2 cut(s) 439, 655
Hpy8I GTNNAC 2 cut(s) 80, 553
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 4 cut(s) 103, 151, 247, 370
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 172, 193
HpyCH4V TGCA 9 cut(s) 80, 110, 203, 212, 222, 326, 625, 708, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 3 cut(s) 259, 507, 661
HpySE526I ACGT 2 cut(s) 172, 193
Hsp92II CATG 7 cut(s) 89, 207, 216, 226, 614, 637, 702
HspAI GCGC 1 cut(s) 45
KspAI GTTAAC 1 cut(s) 553
Kzo9I GATC 4 cut(s) 20, 333, 657, 687
LmnI GCTCC 2 cut(s) 118, 137
Lsp1109I GCAGC 5 cut(s) 54, 75, 78, 122, 609
LweI GCATC 1 cut(s) 209
MaeI CTAG 1 cut(s) 395
MaeII ACGT 2 cut(s) 172, 193
MaeIII GTNAC 2 cut(s) 128, 482
MalI GATC 4 cut(s) 22, 335, 659, 689
MboI GATC 4 cut(s) 20, 333, 657, 687
MboII GAAGA 3 cut(s) 136, 274, 745
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 3 cut(s) 82, 122, 432
MluCI AATT 4 cut(s) 434, 556, 614, 748
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 5 cut(s) 45, 194, 254, 257, 263
Mph1103I ATGCAT 2 cut(s) 205, 224
MseI TTAA 4 cut(s) 405, 495, 552, 669
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 5 cut(s) 39, 187, 307, 313, 561
MspR9I CCNGG 3 cut(s) 39, 308, 562
Mva1269I GAATGC 1 cut(s) 742
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 3 cut(s) 39, 308, 562
NdeII GATC 4 cut(s) 20, 333, 657, 687
NlaIII CATG 7 cut(s) 89, 207, 216, 226, 614, 637, 702
NlaIV GGNNCC 2 cut(s) 139, 311
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 2 cut(s) 205, 224
NspI RCATGY 2 cut(s) 207, 226
PaeI GCATGC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 2 cut(s) 423, 521
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 2 cut(s) 676, 682
PkrI GCNGC 5 cut(s) 44, 65, 68, 112, 624
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
Ppu21I YACGTR 1 cut(s) 194
PshBI ATTAAT 2 cut(s) 405, 669
Psp124BI GAGCTC 1 cut(s) 432
PspCI CACGTG 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 139, 311
PspPI GGNCC 2 cut(s) 72, 310
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 217
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 4 cut(s) 405, 495, 552, 669
SatI GCNGC 5 cut(s) 43, 64, 67, 111, 623
Sau3AI GATC 4 cut(s) 20, 333, 657, 687
Sau96I GGNCC 2 cut(s) 72, 310
ScrFI CCNGG 3 cut(s) 39, 308, 562
SduI GDGCHC 3 cut(s) 82, 122, 432
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 217
SphI GCATGC 1 cut(s) 207
Sse9I AATT 4 cut(s) 434, 556, 614, 748
SsiI CCGC 1 cut(s) 316
SspMI CTAG 1 cut(s) 395
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 37, 306, 560
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 175, 196
TaqI TCGA 2 cut(s) 336, 524
TasI AATT 4 cut(s) 434, 556, 614, 748
TfiI GAWTC 2 cut(s) 676, 682
Tru1I TTAA 4 cut(s) 405, 495, 552, 669
Tru9I TTAA 4 cut(s) 405, 495, 552, 669
TscAI CASTG 2 cut(s) 82, 537
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 5 cut(s) 42, 63, 66, 110, 622
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 217, 627, 689
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 2 cut(s) 82, 537
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 2 cut(s) 405, 669
XapI RAATTY 2 cut(s) 434, 614
XceI RCATGY 2 cut(s) 207, 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XspI CTAG 1 cut(s) 395
Zsp2I ATGCAT 2 cut(s) 205, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.