Rroxscaffold_1G00007720

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016133
Physical Location & Seq
Forward (+)
9867720 .. 9868480
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007720.1

Sequence Viewer

Length: 546 bp
ATGAGGGAAGATCAGTTTGGATCTTTGCCACCCCCTCCCGGCAGCTCCAAGTCAAAGCAGAGCAGCAGGGCCAGCGCACGCCACGTCCGGAGGTTCAATGCAACGAGGATCGACTTTGGCAACGCTCAAAATAAGCAGAAGGTGAGTTTGAAGGGAAAAGTGGATTTGCTAGTGGAGTTTAATAACAAGAACGAGAAAACCGAGCTCAAATTTGGGTTGTTCAAAGTCAGTGCTTCTGCTGCTCATGTCGATCTGGGTAAGACCGAGTTTCAGCCATTTACTCAGCCAAAGAAATCCACAAAATCACTGAATGCAACCATTGGGGTTAACCATCCTGGGGTCGATAAAGAAGACGCAGACCTCCTGAAACAAGACATTCAAAACCATGAAGTTGATCTGACACTGACCTTGGTCGGAAGTGTTAGCTTCCCAATCTCAGGGATTATGATGAATAAGATTCCGATCATGGCGTCATGTGATTGCAAGCAAACGGAAGTTGATTTTGGGAATAATGCAAAGTGTGATTATCGGATTTTCCAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

181

Amino Acids

20.02

Weight (kDa)

9.26

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30505
fragaria_vesca FvH4_3g40830
malus_domestica MD03G1049700.v1.1 MD11G1051900.v1.1
prunus_persica Prupe.6G039500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073561
rosa_laevigata RLG00000036395
rosa_multiflora Rmu_ssc0000226.1_g000002
rosa_roxburghii Rroxscaffold_1G00007720
rosa_rugosa Rorug05G0424800
rosa_samantha Rh5AG481900 Rh5BG502600 Rh5CG525700 Rh5DG514800
rosa_wichuraiana Rw5G044760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 87
AclWI GGATC 2 cut(s) 28, 116
AcsI RAATTY 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 470
AfiI CCNNNNNNNGG 3 cut(s) 38, 337, 437
AgsI TTSAA 4 cut(s) 97, 151, 223, 380
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 334
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 486, 518
AluBI AGCT 3 cut(s) 45, 205, 426
AluI AGCT 3 cut(s) 45, 205, 426
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 2 cut(s) 28, 116
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 42, 63, 239
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 154
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 3 cut(s) 54, 75, 226
BccI CCATC 1 cut(s) 339
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 170
BisI GCNGC 3 cut(s) 43, 64, 240
BlsI GCNGC 3 cut(s) 44, 65, 241
Bme1390I CCNGG 2 cut(s) 39, 336
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 39, 336
BoxI GACNNNNGTC 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 470
BsaJI CCNNGG 2 cut(s) 335, 408
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 337, 437
Bse8I GATNNNNATC 1 cut(s) 461
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 335, 408
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 3 cut(s) 38, 337, 437
BseMII CTCAG 2 cut(s) 296, 450
BseXI GCAGC 3 cut(s) 54, 75, 226
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 39, 88
BslI CCNNNNNNNGG 3 cut(s) 38, 337, 437
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 6 cut(s) 10, 20, 108, 250, 394, 462
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 295, 449
BspEI TCCGGA 1 cut(s) 87
BspPI GGATC 2 cut(s) 28, 116
BssECI CCNNGG 2 cut(s) 335, 408
BssMI GATC 6 cut(s) 10, 20, 108, 250, 394, 462
BssNI GRCGYC 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 470
BstC8I GCNNGC 3 cut(s) 73, 79, 485
BstDEI CTNAG 2 cut(s) 282, 436
BstF5I GGATG 1 cut(s) 331
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 6 cut(s) 13, 23, 111, 253, 397, 465
BstMBI GATC 6 cut(s) 10, 20, 108, 250, 394, 462
BstMWI GCNNNNNNNGC 2 cut(s) 72, 239
BstNI CCWGG 1 cut(s) 336
BstPAI GACNNNNGTC 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 37, 334
BstV1I GCAGC 3 cut(s) 54, 75, 226
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 71
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 235, 305, 401
Cac8I GCNNGC 3 cut(s) 73, 79, 485
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 69
CseI GACGC 2 cut(s) 362, 459
CviAII CATG 4 cut(s) 245, 386, 466, 474
CviJI RGCY 6 cut(s) 45, 71, 205, 274, 286, 426
CviKI_1 RGCY 6 cut(s) 45, 71, 205, 274, 286, 426
DdeI CTNAG 2 cut(s) 282, 436
DpnI GATC 6 cut(s) 12, 22, 110, 252, 396, 464
DpnII GATC 6 cut(s) 10, 20, 108, 250, 394, 462
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 4 cut(s) 248, 389, 469, 477
FaiI YATR 5 cut(s) 246, 387, 446, 467, 475
FatI CATG 4 cut(s) 244, 385, 465, 473
Fnu4HI GCNGC 3 cut(s) 43, 64, 240
FokI GGATG 1 cut(s) 318
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 43, 64, 240
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 76
GluI GCNGC 3 cut(s) 43, 64, 240
HaeIII GGCC 1 cut(s) 71
HapII CCGG 2 cut(s) 39, 88
HgaI GACGC 2 cut(s) 362, 459
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 470
Hin1II CATG 4 cut(s) 248, 389, 469, 477
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 457
HpaI GTTAAC 1 cut(s) 328
HpaII CCGG 2 cut(s) 39, 88
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 399, 416, 462, 531
Hpy188III TCNNGA 2 cut(s) 88, 364
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 133, 145
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 101, 314, 483, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 239
HpyF3I CTNAG 2 cut(s) 282, 436
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 470
Hsp92II CATG 4 cut(s) 248, 389, 469, 477
HspAI GCGC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 87
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 6 cut(s) 10, 20, 108, 250, 394, 462
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 9 cut(s) 52, 52, 85, 101, 239, 321, 348, 377, 423
Lsp1109I GCAGC 3 cut(s) 54, 75, 226
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 84
MalI GATC 6 cut(s) 12, 22, 110, 252, 396, 464
MboI GATC 6 cut(s) 10, 20, 108, 250, 394, 462
MboII GAAGA 2 cut(s) 20, 362
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 4 cut(s) 45, 84, 99, 371
MroI TCCGGA 1 cut(s) 87
MseI TTAA 2 cut(s) 180, 327
MspI CCGG 2 cut(s) 39, 88
MspR9I CCNGG 2 cut(s) 39, 336
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 72, 239
NciI CCSGG 1 cut(s) 39
NdeII GATC 6 cut(s) 10, 20, 108, 250, 394, 462
NlaIII CATG 4 cut(s) 248, 389, 469, 477
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 3 cut(s) 44, 65, 241
PshAI GACNNNNGTC 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 20
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 180, 327
SatI GCNGC 3 cut(s) 43, 64, 240
Sau3AI GATC 6 cut(s) 10, 20, 108, 250, 394, 462
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 39, 336
SduI GDGCHC 1 cut(s) 207
SetI ASST 8 cut(s) 47, 87, 95, 144, 207, 363, 410, 428
Sse9I AATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 37, 334
StyI CCWWGG 1 cut(s) 408
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 111, 249, 342
TaqII GACCGA 1 cut(s) 278
TasI AATT 1 cut(s) 209
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 180, 327
Tru9I TTAA 2 cut(s) 180, 327
TscAI CASTG 3 cut(s) 235, 312, 408
TseI GCWGC 3 cut(s) 42, 63, 239
TspDTI ATGAA 2 cut(s) 402, 464
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 3 cut(s) 235, 312, 408
XapI RAATTY 1 cut(s) 209
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.