MD11G1051900.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016133
Physical Location & Seq
Forward (+)
4437304 .. 4438905
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1051900.v1.1.491

Sequence Viewer

Length: 900 bp
ATGGCAGACGGTTCATCCTTGCCTCCACCTCCTGGCCGCAACCAATCAAAGGCCAGCAGTGCGCGGCATGTTGCCTTTTCCGAAACTGCCTCAGCTCCCAGCAAGGTCCGCGAACAGCCCTATCCGGTTCCCGACCTTGACCATGAGCGCCCCAAGCGTATTCGTCCAGGCTGCTACGCTTGCTGCGCATGGTGCTGCTTGGTCTTCTTCGCCATTGTGATTCTCGCTCTCATTATTGGTTTCATTTGCGTGGCCATCTTCCATTCGTATCTCCCAACAATCTACATCCGAAGATTCAACGCCACCAGCCTCAACTTTACTAAAAACCACAATAACATTGTCTTGAAGGGAAATGTAGATTTTCTTGTGGAGTTCTTTAACAAGAATGACAAAACTGAGCTCAAGTATGGCGCCTTCAAGATCAAAGTTACGTCTGCGCACATCCCGCTAGGTAGCACCCAGTTTTCTCAGTTTACTCAGGGCCACAAGAACACCAAGTTCTTGAATGGAACTGTTAGGGTTAATAAATCCAAGATTGACAAAGACGACGCAGACCAACTCAAGATCGACATGAAAAATAGGGACATGACACTGAATTTAGGCATGACCGGAAGCGTTAGCTTCCCCATTGGAGGAATTCAGTTTAATGACATTCCGATCATTTCAAACTGCGATGCCAAGCAAAGGGAAATTGATTTCGGAAACAAGGCTAAATGTGAGATTAGCTCTACGTCAACAGTCGCGTGCAAGGCACCAACCCTCTCCCAAAGGAGAAAGGACCGTTGCACCCAGAAACCCCCTGCCCAAAACAAGTTTATAATTCATCTTCATTCCTGCCTCGAAAGCTTATGTTTGGACGAGAGATTTTATGACAGTGTCAAGAAATTGAAGCCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

300

Amino Acids

33.45

Weight (kDa)

9.39

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30505
fragaria_vesca FvH4_3g40830
malus_domestica MD03G1049700.v1.1 MD11G1051900.v1.1
prunus_persica Prupe.6G039500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073561
rosa_laevigata RLG00000036395
rosa_multiflora Rmu_ssc0000226.1_g000002
rosa_roxburghii Rroxscaffold_1G00007720
rosa_rugosa Rorug05G0424800
rosa_samantha Rh5AG481900 Rh5BG502600 Rh5CG525700 Rh5DG514800
rosa_wichuraiana Rw5G044760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 818
Acc16I TGCGCA 2 cut(s) 187, 438
AccB1I GGYRCC 2 cut(s) 410, 751
AccB7I CCANNNNNTGG 1 cut(s) 32
AccII CGCG 3 cut(s) 64, 111, 743
AciI CCGC 4 cut(s) 37, 64, 109, 446
AcoI YGGCCR 2 cut(s) 34, 252
AcsI RAATTY 2 cut(s) 595, 636
AcyI GRCGYC 1 cut(s) 411
AfiI CCNNNNNNNGG 4 cut(s) 32, 49, 632, 684
AgsI TTSAA 6 cut(s) 298, 346, 418, 505, 666, 889
AjnI CCWGG 2 cut(s) 31, 166
AluBI AGCT 5 cut(s) 95, 400, 621, 726, 846
AluI AGCT 5 cut(s) 95, 400, 621, 726, 846
Alw21I GWGCWC 1 cut(s) 402
AoxI GGCC 4 cut(s) 34, 51, 252, 481
ApeKI GCWGC 3 cut(s) 171, 183, 195
ApoI RAATTY 2 cut(s) 595, 636
AspLEI GCGC 5 cut(s) 64, 150, 188, 413, 439
AspS9I GGNCC 3 cut(s) 106, 481, 778
AvaII GGWCC 2 cut(s) 106, 778
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 2 cut(s) 410, 751
BanII GRGCYC 1 cut(s) 402
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 158, 170, 182
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 2 cut(s) 33, 168
BfaI CTAG 1 cut(s) 449
BfoI RGCGCY 2 cut(s) 151, 414
BisI GCNGC 5 cut(s) 37, 65, 172, 184, 196
BlsI GCNGC 5 cut(s) 38, 66, 173, 185, 197
Bme1390I CCNGG 2 cut(s) 33, 168
Bme18I GGWCC 2 cut(s) 106, 778
BmgT120I GGNCC 3 cut(s) 106, 481, 778
BmiI GGNNCC 3 cut(s) 129, 412, 753
BmrFI CCNGG 2 cut(s) 33, 168
BmrI ACTGGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 664
BmuI ACTGGG 1 cut(s) 454
BpiI GAAGAC 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 710, 742
Bpu10I CCTNAGC 1 cut(s) 91
BpuEI CTTGAG 2 cut(s) 386, 545
BsaHI GRCGYC 1 cut(s) 411
BsaWI WCCGGW 2 cut(s) 124, 608
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 49, 632, 684
Bse1I ACTGG 1 cut(s) 460
BseBI CCWGG 2 cut(s) 33, 168
BseGI GGATG 3 cut(s) 14, 285, 441
BseLI CCNNNNNNNGG 4 cut(s) 32, 49, 632, 684
BseMII CTCAG 4 cut(s) 105, 387, 482, 491
BseNI ACTGG 1 cut(s) 460
BseXI GCAGC 3 cut(s) 158, 170, 182
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 3 cut(s) 64, 111, 743
BshFI GGCC 4 cut(s) 36, 53, 254, 483
BshNI GGYRCC 2 cut(s) 410, 751
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 125, 609
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 4 cut(s) 32, 49, 632, 684
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 4 cut(s) 36, 53, 254, 483
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 3 cut(s) 420, 564, 657
BspACI CCGC 4 cut(s) 37, 64, 109, 446
BspANI GGCC 4 cut(s) 36, 53, 254, 483
BspCNI CTCAG 4 cut(s) 104, 388, 481, 490
BspFNI CGCG 3 cut(s) 64, 111, 743
BspLI GGNNCC 3 cut(s) 129, 412, 753
BspT107I GGYRCC 2 cut(s) 410, 751
BsrI ACTGG 1 cut(s) 460
BssMI GATC 3 cut(s) 420, 564, 657
BssNI GRCGYC 1 cut(s) 411
Bst2UI CCWGG 2 cut(s) 33, 168
Bst4CI ACNGT 5 cut(s) 11, 514, 739, 782, 875
BstACI GRCGYC 1 cut(s) 411
BstC8I GCNNGC 3 cut(s) 55, 181, 745
BstDEI CTNAG 4 cut(s) 91, 396, 468, 477
BstF5I GGATG 3 cut(s) 14, 285, 441
BstFNI CGCG 3 cut(s) 64, 111, 743
BstH2I RGCGCY 2 cut(s) 151, 414
BstHHI GCGC 5 cut(s) 64, 150, 188, 413, 439
BstKTI GATC 3 cut(s) 423, 567, 660
BstMBI GATC 3 cut(s) 420, 564, 657
BstMWI GCNNNNNNNGC 9 cut(s) 59, 108, 154, 180, 185, 192, 445, 749, 843
BstNI CCWGG 2 cut(s) 33, 168
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 2 cut(s) 31, 166
BstUI CGCG 3 cut(s) 64, 111, 743
BstV1I GCAGC 3 cut(s) 158, 170, 182
BstV2I GAAGAC 1 cut(s) 196
BsuRI GGCC 4 cut(s) 36, 53, 254, 483
BtgZI GCGATG 1 cut(s) 687
BtsCI GGATG 3 cut(s) 14, 285, 441
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 3 cut(s) 64, 590, 880
Cac8I GCNNGC 3 cut(s) 55, 181, 745
CfoI GCGC 5 cut(s) 64, 150, 188, 413, 439
Cfr13I GGNCC 3 cut(s) 106, 481, 778
CseI GACGC 1 cut(s) 557
CviAII CATG 6 cut(s) 68, 143, 189, 571, 586, 604
DdeI CTNAG 4 cut(s) 91, 396, 468, 477
DinI GGCGCC 1 cut(s) 412
DpnI GATC 3 cut(s) 422, 566, 659
DpnII GATC 3 cut(s) 420, 564, 657
EaeI YGGCCR 2 cut(s) 34, 252
Ecl136II GAGCTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 106, 778
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 636
EcoRII CCWGG 2 cut(s) 31, 166
EcoT38I GRGCYC 1 cut(s) 402
EgeI GGCGCC 1 cut(s) 412
EheI GGCGCC 1 cut(s) 412
FaeI CATG 6 cut(s) 71, 146, 192, 574, 589, 607
FaqI GGGAC 1 cut(s) 596
FatI CATG 6 cut(s) 67, 142, 188, 570, 585, 603
FauI CCCGC 1 cut(s) 453
Fnu4HI GCNGC 5 cut(s) 37, 65, 172, 184, 196
FokI GGATG 2 cut(s) 272, 428
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 5 cut(s) 37, 65, 172, 184, 196
FspBI CTAG 1 cut(s) 449
FspI TGCGCA 2 cut(s) 187, 438
GlaI GCGC 5 cut(s) 63, 149, 187, 412, 438
GluI GCNGC 5 cut(s) 37, 65, 172, 184, 196
GsaI CCCAGC 1 cut(s) 102
HaeII RGCGCY 2 cut(s) 151, 414
HaeIII GGCC 4 cut(s) 36, 53, 254, 483
HapII CCGG 2 cut(s) 125, 609
HgaI GACGC 1 cut(s) 557
HhaI GCGC 5 cut(s) 64, 150, 188, 413, 439
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 6 cut(s) 71, 146, 192, 574, 589, 607
Hin6I GCGC 5 cut(s) 62, 148, 186, 411, 437
HinP1I GCGC 5 cut(s) 62, 148, 186, 411, 437
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HindIII AAGCTT 1 cut(s) 844
HinfI GANTC 2 cut(s) 220, 294
HpaII CCGG 2 cut(s) 125, 609
Hpy166II GTNNAC 2 cut(s) 474, 735
Hpy188I TCNGA 4 cut(s) 82, 290, 657, 701
Hpy188III TCNNGA 6 cut(s) 131, 343, 418, 502, 562, 880
Hpy8I GTNNAC 2 cut(s) 474, 735
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 2 cut(s) 340, 424
HpyCH4III ACNGT 5 cut(s) 11, 514, 739, 782, 875
HpyCH4IV ACGT 2 cut(s) 431, 731
HpyCH4V TGCA 2 cut(s) 747, 786
HpyF10VI GCNNNNNNNGC 9 cut(s) 59, 108, 154, 180, 185, 192, 445, 749, 843
HpyF3I CTNAG 4 cut(s) 91, 396, 468, 477
HpySE526I ACGT 2 cut(s) 431, 731
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 6 cut(s) 71, 146, 192, 574, 589, 607
HspAI GCGC 5 cut(s) 62, 148, 186, 411, 437
KasI GGCGCC 1 cut(s) 410
Kzo9I GATC 3 cut(s) 420, 564, 657
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 3 cut(s) 158, 170, 182
LweI GCATC 1 cut(s) 664
MaeI CTAG 1 cut(s) 449
MaeII ACGT 2 cut(s) 431, 731
MaeIII GTNAC 1 cut(s) 427
MalI GATC 3 cut(s) 422, 566, 659
MboI GATC 3 cut(s) 420, 564, 657
MboII GAAGA 5 cut(s) 196, 199, 250, 303, 818
MhlI GDGCHC 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 5 cut(s) 595, 636, 690, 819, 884
MluNI TGGCCA 1 cut(s) 254
Mly113I GGCGCC 1 cut(s) 411
MnlI CCTC 7 cut(s) 33, 39, 100, 320, 626, 770, 848
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 3 cut(s) 378, 522, 645
MslI CAYNNNNRTG 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 2 cut(s) 125, 609
MspR9I CCNGG 2 cut(s) 33, 168
MvaI CCWGG 2 cut(s) 33, 168
MvnI CGCG 3 cut(s) 64, 111, 743
MwoI GCNNNNNNNGC 9 cut(s) 59, 108, 154, 180, 185, 192, 445, 749, 843
NarI GGCGCC 1 cut(s) 411
NdeII GATC 3 cut(s) 420, 564, 657
NlaIII CATG 6 cut(s) 71, 146, 192, 574, 589, 607
NlaIV GGNNCC 3 cut(s) 129, 412, 753
NsbI TGCGCA 2 cut(s) 187, 438
NspI RCATGY 1 cut(s) 71
PfeI GAWTC 2 cut(s) 220, 294
PflFI GACNNNGTC 1 cut(s) 875
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 5 cut(s) 38, 66, 173, 185, 197
PluTI GGCGCC 1 cut(s) 414
PsiI TTATAA 1 cut(s) 818
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 2 cut(s) 31, 166
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 31, 166
PspN4I GGNNCC 3 cut(s) 129, 412, 753
PspPI GGNCC 3 cut(s) 106, 481, 778
PsyI GACNNNGTC 1 cut(s) 875
RseI CAYNNNNRTG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 3 cut(s) 378, 522, 645
SatI GCNGC 5 cut(s) 37, 65, 172, 184, 196
Sau3AI GATC 3 cut(s) 420, 564, 657
Sau96I GGNCC 3 cut(s) 106, 481, 778
ScrFI CCNGG 2 cut(s) 33, 168
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 1 cut(s) 664
SfoI GGCGCC 1 cut(s) 412
SinI GGWCC 2 cut(s) 106, 778
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 401, 560
SmoI CTYRAG 2 cut(s) 401, 560
Sse9I AATT 5 cut(s) 595, 636, 690, 819, 884
SsiI CCGC 4 cut(s) 37, 64, 109, 446
SspDI GGCGCC 1 cut(s) 410
SspMI CTAG 1 cut(s) 449
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 31, 166
TaaI ACNGT 5 cut(s) 11, 514, 739, 782, 875
TaiI ACGT 2 cut(s) 434, 734
TaqI TCGA 2 cut(s) 567, 840
TasI AATT 5 cut(s) 595, 636, 690, 819, 884
TauI GCSGC 2 cut(s) 39, 67
TfiI GAWTC 2 cut(s) 220, 294
Tru1I TTAA 3 cut(s) 378, 522, 645
Tru9I TTAA 3 cut(s) 378, 522, 645
TscAI CASTG 3 cut(s) 64, 597, 880
TseI GCWGC 3 cut(s) 171, 183, 195
TspDTI ATGAA 4 cut(s) 232, 587, 812, 818
TspRI CASTG 3 cut(s) 64, 597, 880
Tth111I GACNNNGTC 1 cut(s) 875
Van91I CCANNNNNTGG 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 106, 778
XapI RAATTY 2 cut(s) 595, 636
XceI RCATGY 1 cut(s) 71
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.