RchiOBHm_Chr5g0073561

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016133
Physical Location & Seq
Reverse (-)
79565748 .. 79566717
970 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34844

Sequence Viewer

Length: 762 bp
ATGAGGGAAGATCAGTTTGGATCTTTGCCACCCCCTCCCGGCAGCTCCAAGTCAAAGCAGAGCAGCAGGGCCAGCGCACGCCACGTTGCCTTCTCGGAAACTTCCACTCCAAGTACCAAGCCTGATGGAGCCTTCCTCCCCCCACCAGATTTAGATGGAGAACGTCCAAAACGCTTCCGTCCACGTGCCTATGCATGCTGTGCATGGGGTTGCATGTTCATTTTCGCCTTCGTCCTCCTCGCCCTCATCTTAGGTTTTGTATTCATCTCCATCTTCCATTCTTACCTACCTGAAATCAAGGTCCGGAGGTTCAATGCAACGAGGATCGACTTTGGCAACGCTCAAAATAAGCAGAAGGTGAGTTTGAAGGGAAAAGTGGACTTGCTAGTGGAGTTTAATAACAAGAACGAGAAAACCGAGCTCAAATTCGGGTTGTTCAAAGTCAGTGCTTCTGCTTCTCATGTCGATCTGGGTAAGACCGAGTTTCAGCCATTTACTCAGCCAAAGAAATCCACAAAATCACTGAATGCAACCATTGGGGTTAACCATCCTGGGGTAGATAAAGAAGACGCAGACCTCCTGAAACAAGACATTCAAAACCATGAAGTTGATCTGACACTGACCTTGGTCGGAAGTGTTAGCTTCCCACTCTCAGGGATTATGATGAATAAGATTCCGATCATGGCGTCATGTGATTGCAAGCAAACGGAAGTTGATTTTGGGAATAATGCAAAGTGTGATTATCGGATTTTCCAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

253

Amino Acids

28.08

Weight (kDa)

9.08

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30505
fragaria_vesca FvH4_3g40830
malus_domestica MD03G1049700.v1.1 MD11G1051900.v1.1
prunus_persica Prupe.6G039500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073561
rosa_laevigata RLG00000036395
rosa_multiflora Rmu_ssc0000226.1_g000002
rosa_roxburghii Rroxscaffold_1G00007720
rosa_rugosa Rorug05G0424800
rosa_samantha Rh5AG481900 Rh5BG502600 Rh5CG525700 Rh5DG514800
rosa_wichuraiana Rw5G044760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 303
AclWI GGATC 2 cut(s) 28, 332
AcsI RAATTY 1 cut(s) 425
AcvI CACGTG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 686
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 3 cut(s) 38, 553, 653
AgsI TTSAA 4 cut(s) 313, 367, 439, 596
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 702, 734
AluBI AGCT 3 cut(s) 45, 421, 642
AluI AGCT 3 cut(s) 45, 421, 642
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 2 cut(s) 28, 332
Aor13HI TCCGGA 1 cut(s) 303
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 42, 63
ApoI RAATTY 1 cut(s) 425
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 69, 301
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 423
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 54, 75
BccI CCATC 4 cut(s) 119, 149, 278, 555
BciT130I CCWGG 1 cut(s) 552
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 386
BisI GCNGC 2 cut(s) 43, 64
BlsI GCNGC 2 cut(s) 44, 65
Bme1390I CCNGG 2 cut(s) 39, 552
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 69, 301
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 39, 552
BoxI GACNNNNGTC 1 cut(s) 626
BpiI GAAGAC 1 cut(s) 573
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpuMI CCSGG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 686
BsaJI CCNNGG 2 cut(s) 551, 624
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 553, 653
Bse8I GATNNNNATC 1 cut(s) 677
BseAI TCCGGA 1 cut(s) 303
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 551, 624
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 677
BseLI CCNNNNNNNGG 3 cut(s) 38, 553, 653
BseMII CTCAG 2 cut(s) 512, 666
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 54, 75
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 2 cut(s) 39, 304
BslI CCNNNNNNNGG 3 cut(s) 38, 553, 653
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 423
Bsp13I TCCGGA 1 cut(s) 303
Bsp143I GATC 6 cut(s) 10, 20, 324, 466, 610, 678
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 511, 665
BspEI TCCGGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 2 cut(s) 28, 332
BssECI CCNNGG 2 cut(s) 551, 624
BssMI GATC 6 cut(s) 10, 20, 324, 466, 610, 678
BssNI GRCGYC 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 552
BstACI GRCGYC 1 cut(s) 686
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 73, 79, 196, 701
BstDEI CTNAG 3 cut(s) 250, 498, 652
BstF5I GGATG 1 cut(s) 547
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 6 cut(s) 13, 23, 327, 469, 613, 681
BstMBI GATC 6 cut(s) 10, 20, 324, 466, 610, 678
BstMWI GCNNNNNNNGC 2 cut(s) 72, 200
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 198, 217
BstPAI GACNNNNGTC 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 37, 550
BstV1I GCAGC 2 cut(s) 54, 75
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 3 cut(s) 451, 521, 617
Cac8I GCNNGC 4 cut(s) 73, 79, 196, 701
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 69, 301
CseI GACGC 2 cut(s) 578, 675
Csp6I GTAC 1 cut(s) 114
CviAII CATG 7 cut(s) 195, 204, 214, 461, 602, 682, 690
CviJI RGCY 8 cut(s) 45, 71, 121, 131, 421, 490, 502, 642
CviKI_1 RGCY 8 cut(s) 45, 71, 121, 131, 421, 490, 502, 642
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 3 cut(s) 250, 498, 652
DpnI GATC 6 cut(s) 12, 22, 326, 468, 612, 680
DpnII GATC 6 cut(s) 10, 20, 324, 466, 610, 678
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 421
Eco72I CACGTG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 624
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 7 cut(s) 198, 207, 217, 464, 605, 685, 693
FaiI YATR 9 cut(s) 192, 196, 205, 215, 462, 603, 662, 683, 691
FatI CATG 7 cut(s) 194, 203, 213, 460, 601, 681, 689
Fnu4HI GCNGC 2 cut(s) 43, 64
FokI GGATG 1 cut(s) 534
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 2 cut(s) 43, 64
FspBI CTAG 1 cut(s) 386
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 43, 64
HaeIII GGCC 1 cut(s) 71
HapII CCGG 2 cut(s) 39, 304
HgaI GACGC 2 cut(s) 578, 675
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 686
Hin1II CATG 7 cut(s) 198, 207, 217, 464, 605, 685, 693
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 1 cut(s) 673
HpaI GTTAAC 1 cut(s) 544
HpaII CCGG 2 cut(s) 39, 304
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 3 cut(s) 182, 379, 544
Hpy188I TCNGA 5 cut(s) 97, 615, 632, 678, 747
Hpy188III TCNNGA 2 cut(s) 304, 580
Hpy8I GTNNAC 3 cut(s) 182, 379, 544
HpyAV CCTTC 5 cut(s) 100, 142, 238, 349, 361
HpyCH4IV ACGT 3 cut(s) 84, 163, 184
HpyCH4V TGCA 7 cut(s) 194, 203, 213, 317, 530, 699, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 200
HpyF3I CTNAG 3 cut(s) 250, 498, 652
HpySE526I ACGT 3 cut(s) 84, 163, 184
Hsp92I GRCGYC 1 cut(s) 686
Hsp92II CATG 7 cut(s) 198, 207, 217, 464, 605, 685, 693
HspAI GCGC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 544
Kzo9I GATC 6 cut(s) 10, 20, 324, 466, 610, 678
LmnI GCTCC 2 cut(s) 50, 128
Lsp1109I GCAGC 2 cut(s) 54, 75
MaeI CTAG 1 cut(s) 386
MaeII ACGT 3 cut(s) 84, 163, 184
MalI GATC 6 cut(s) 12, 22, 326, 468, 612, 680
MboI GATC 6 cut(s) 10, 20, 324, 466, 610, 678
MboII GAAGA 3 cut(s) 20, 265, 578
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 8 cut(s) 45, 146, 245, 248, 254, 300, 315, 587
Mph1103I ATGCAT 1 cut(s) 196
MroI TCCGGA 1 cut(s) 303
MseI TTAA 2 cut(s) 396, 543
MspI CCGG 2 cut(s) 39, 304
MspR9I CCNGG 2 cut(s) 39, 552
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 72, 200
NciI CCSGG 1 cut(s) 39
NdeII GATC 6 cut(s) 10, 20, 324, 466, 610, 678
NlaIII CATG 7 cut(s) 198, 207, 217, 464, 605, 685, 693
NlaIV GGNNCC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 2 cut(s) 198, 217
PaeI GCATGC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 1 cut(s) 532
PfeI GAWTC 1 cut(s) 673
PkrI GCNGC 2 cut(s) 44, 65
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
Ppu21I YACGTR 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 626
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 550
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 2 cut(s) 69, 301
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 396, 543
SatI GCNGC 2 cut(s) 43, 64
Sau3AI GATC 6 cut(s) 10, 20, 324, 466, 610, 678
Sau96I GGNCC 2 cut(s) 69, 301
ScrFI CCNGG 2 cut(s) 39, 552
SduI GDGCHC 1 cut(s) 423
SinI GGWCC 1 cut(s) 301
SphI GCATGC 1 cut(s) 198
Sse9I AATT 1 cut(s) 425
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 37, 550
StyI CCWWGG 1 cut(s) 624
TaiI ACGT 3 cut(s) 87, 166, 187
TaqI TCGA 2 cut(s) 327, 465
TaqII GACCGA 1 cut(s) 494
TasI AATT 1 cut(s) 425
TfiI GAWTC 1 cut(s) 673
Tru1I TTAA 2 cut(s) 396, 543
Tru9I TTAA 2 cut(s) 396, 543
TscAI CASTG 3 cut(s) 451, 528, 624
TseI GCWGC 2 cut(s) 42, 63
TspDTI ATGAA 4 cut(s) 208, 253, 618, 680
TspGWI ACGGA 2 cut(s) 167, 722
TspRI CASTG 3 cut(s) 451, 528, 624
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 425
XceI RCATGY 2 cut(s) 198, 217
XspI CTAG 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.