Prupe.6G039500_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016133
Physical Location & Seq
Forward (+)
2973605 .. 2974746
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G039500.1

Sequence Viewer

Length: 759 bp
ATGTCAGACGGCTTAGGTTCATCCTTGCCTCCACCTCCTGGCCACAACCAATCGAAGGCCAGCAGTGCACGACATGTCGCCTTCTCTGAAACCTCTGCACCATCAGCTCCCAGCAAGGCCCATGATCAAGCCATCCATTTTGTTCCTGACCTTGATGATGAGCACCCTAAACGCTTTCGTCCAGGCTGCTACGCCTGCTGCGCATGGGGTTGCTTGTTCTTCTTTGCCTTCATACTGCTTGCTCTCATTGTTGGTTTCATATTCGTGGCTATCTTCCAATCCTATCTGCCTCAAATCCACATCCGAAGGTTCAACGCCACAACCATCAACTTTGCTAAAGCCAACAAAGATTTGGGCGTGAAGGGAAAAGTTGATTTTCTTGTGGAGTTTTTTAACAAGAATGAGAAAACTGAGCTCAGATATGGCGCCTTCAAGATCACTGCTTCATCTGCGCACGTCCAGCTAGGTAAGACTGAGTTTCCAGAGTTTAGACAGGGCCAAAAAAACACAAAATCTCTGAACGGAACCATCACGGTTAAACTTTCTGGGGTTGATAAAGACGACGCTGATCAGCTCAAAACCGACATAAAAAATAGGGAAGTAACTCTGAATTTGGCAATAACCGGCAGTGTTAGCTTCCCTATTGGAGGAGTTTGGTTTAAGAGCGTTCCCATCATATCAAACTGCGATGCCAAGCAAAGGGAAGTTGATTTTGGAAACAAGGCCAAATGTGACTATAGGATTATTGCCATAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

253

Amino Acids

27.82

Weight (kDa)

9.18

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30505
fragaria_vesca FvH4_3g40830
malus_domestica MD03G1049700.v1.1 MD11G1051900.v1.1
prunus_persica Prupe.6G039500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073561
rosa_laevigata RLG00000036395
rosa_multiflora Rmu_ssc0000226.1_g000002
rosa_roxburghii Rroxscaffold_1G00007720
rosa_rugosa Rorug05G0424800
rosa_samantha Rh5AG481900 Rh5BG502600 Rh5CG525700 Rh5DG514800
rosa_wichuraiana Rw5G044760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 202, 453
AccB1I GGYRCC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 610
AcyI GRCGYC 1 cut(s) 426
AfiI CCNNNNNNNGG 4 cut(s) 38, 55, 647, 699
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 313, 433
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 2 cut(s) 37, 181
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AluBI AGCT 5 cut(s) 107, 415, 463, 574, 636
AluI AGCT 5 cut(s) 107, 415, 463, 574, 636
Alw21I GWGCWC 3 cut(s) 70, 165, 417
Alw44I GTGCAC 1 cut(s) 66
AoxI GGCC 5 cut(s) 40, 57, 117, 496, 723
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 186, 198
ApoI RAATTY 1 cut(s) 610
AspLEI GCGC 3 cut(s) 203, 428, 454
AspS9I GGNCC 2 cut(s) 118, 496
BaeGI GKGCMC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 42
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 417
Bbv12I GWGCWC 3 cut(s) 70, 165, 417
BbvI GCAGC 2 cut(s) 173, 185
BccI CCATC 5 cut(s) 109, 140, 332, 536, 680
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 2 cut(s) 39, 183
BclI TGATCA 2 cut(s) 124, 568
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 736
BfoI RGCGCY 1 cut(s) 429
BisI GCNGC 2 cut(s) 187, 199
BlsI GCNGC 2 cut(s) 188, 200
Bme1390I CCNGG 2 cut(s) 39, 183
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 2 cut(s) 118, 496
BmiI GGNNCC 2 cut(s) 427, 526
BmrFI CCNGG 2 cut(s) 39, 183
BmsI GCATC 1 cut(s) 679
Bpu10I CCTNAGC 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 426
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 55, 647, 699
Bse118I RCCGGY 1 cut(s) 623
BseBI CCWGG 2 cut(s) 39, 183
BseGI GGATG 3 cut(s) 20, 132, 300
BseLI CCNNNNNNNGG 4 cut(s) 38, 55, 647, 699
BseMII CTCAG 3 cut(s) 402, 430, 465
BseRI GAGGAG 1 cut(s) 663
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 173, 185
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 5 cut(s) 42, 59, 119, 498, 725
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 3 cut(s) 70, 165, 417
BsiSI CCGG 1 cut(s) 624
BslI CCNNNNNNNGG 4 cut(s) 38, 55, 647, 699
BsnI GGCC 5 cut(s) 42, 59, 119, 498, 725
Bsp1286I GDGCHC 3 cut(s) 70, 165, 417
Bsp143I GATC 3 cut(s) 124, 435, 568
BspANI GGCC 5 cut(s) 42, 59, 119, 498, 725
BspCNI CTCAG 3 cut(s) 403, 429, 466
BspLI GGNNCC 2 cut(s) 427, 526
BspT107I GGYRCC 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 623
BssAI RCCGGY 1 cut(s) 623
BssMI GATC 3 cut(s) 124, 435, 568
BssNI GRCGYC 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 39, 183
Bst4CI ACNGT 1 cut(s) 535
BstACI GRCGYC 1 cut(s) 426
BstC8I GCNNGC 3 cut(s) 61, 196, 240
BstDEI CTNAG 4 cut(s) 13, 411, 416, 474
BstENI CCTNNNNNAGG 1 cut(s) 645
BstF5I GGATG 3 cut(s) 20, 132, 300
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 3 cut(s) 203, 428, 454
BstKTI GATC 3 cut(s) 127, 438, 571
BstMBI GATC 3 cut(s) 124, 435, 568
BstMWI GCNNNNNNNGC 7 cut(s) 65, 104, 195, 200, 449, 460, 633
BstNI CCWGG 2 cut(s) 39, 183
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 37, 181
BstSFI CTRYAG 1 cut(s) 736
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 173, 185
BsuRI GGCC 5 cut(s) 42, 59, 119, 498, 725
BtgZI GCGATG 1 cut(s) 702
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 3 cut(s) 20, 132, 300
BtsI GCAGTG 3 cut(s) 70, 438, 634
BtsIMutI CAGTG 3 cut(s) 70, 438, 634
Cac8I GCNNGC 3 cut(s) 61, 196, 240
CfoI GCGC 3 cut(s) 203, 428, 454
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 2 cut(s) 118, 496
CseI GACGC 1 cut(s) 572
CviAII CATG 3 cut(s) 74, 122, 204
DdeI CTNAG 4 cut(s) 13, 411, 416, 474
DinI GGCGCC 1 cut(s) 427
DpnI GATC 3 cut(s) 126, 437, 570
DpnII GATC 3 cut(s) 124, 435, 568
EaeI YGGCCR 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 415
EcoNI CCTNNNNNAGG 1 cut(s) 645
EcoRII CCWGG 2 cut(s) 37, 181
EcoT38I GRGCYC 1 cut(s) 417
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
FaeI CATG 3 cut(s) 77, 125, 207
FatI CATG 3 cut(s) 73, 121, 203
FbaI TGATCA 2 cut(s) 124, 568
Fnu4HI GCNGC 2 cut(s) 187, 199
FokI GGATG 3 cut(s) 7, 119, 287
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 2 cut(s) 187, 199
FspBI CTAG 1 cut(s) 464
FspI TGCGCA 2 cut(s) 202, 453
GlaI GCGC 3 cut(s) 202, 427, 453
GluI GCNGC 2 cut(s) 187, 199
GsaI CCCAGC 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 5 cut(s) 42, 59, 119, 498, 725
HapII CCGG 1 cut(s) 624
HgaI GACGC 1 cut(s) 572
HhaI GCGC 3 cut(s) 203, 428, 454
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 3 cut(s) 77, 125, 207
Hin6I GCGC 3 cut(s) 201, 426, 452
HinP1I GCGC 3 cut(s) 201, 426, 452
HpaII CCGG 1 cut(s) 624
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 6 cut(s) 7, 88, 305, 419, 519, 609
Hpy188III TCNNGA 3 cut(s) 146, 433, 482
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 6 cut(s) 49, 91, 238, 300, 355, 439
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 2 cut(s) 68, 98
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 104, 195, 200, 449, 460, 633
HpyF3I CTNAG 4 cut(s) 13, 411, 416, 474
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 3 cut(s) 77, 125, 207
HspAI GCGC 3 cut(s) 201, 426, 452
KasI GGCGCC 1 cut(s) 425
Ksp22I TGATCA 2 cut(s) 124, 568
Kzo9I GATC 3 cut(s) 124, 435, 568
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 173, 185
LweI GCATC 1 cut(s) 679
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 601, 731
MalI GATC 3 cut(s) 126, 437, 570
MboI GATC 3 cut(s) 124, 435, 568
MboII GAAGA 2 cut(s) 211, 265
MhlI GDGCHC 3 cut(s) 70, 165, 417
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 1 cut(s) 610
MluNI TGGCCA 1 cut(s) 42
Mly113I GGCGCC 1 cut(s) 426
MnlI CCTC 5 cut(s) 39, 45, 103, 300, 641
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MseI TTAA 3 cut(s) 393, 537, 660
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 42
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 2 cut(s) 39, 183
MvaI CCWGG 2 cut(s) 39, 183
MwoI GCNNNNNNNGC 7 cut(s) 65, 104, 195, 200, 449, 460, 633
NarI GGCGCC 1 cut(s) 426
NdeII GATC 3 cut(s) 124, 435, 568
NlaIII CATG 3 cut(s) 77, 125, 207
NlaIV GGNNCC 2 cut(s) 427, 526
NmuCI GTSAC 1 cut(s) 731
NsbI TGCGCA 2 cut(s) 202, 453
NspI RCATGY 1 cut(s) 77
PciI ACATGT 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 2 cut(s) 188, 200
PluTI GGCGCC 1 cut(s) 429
PscI ACATGT 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 37, 181
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 2 cut(s) 37, 181
PspN4I GGNNCC 2 cut(s) 427, 526
PspPI GGNCC 2 cut(s) 118, 496
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 3 cut(s) 393, 537, 660
SatI GCNGC 2 cut(s) 187, 199
Sau3AI GATC 3 cut(s) 124, 435, 568
Sau96I GGNCC 2 cut(s) 118, 496
ScrFI CCNGG 2 cut(s) 39, 183
SduI GDGCHC 3 cut(s) 70, 165, 417
SfaNI GCATC 1 cut(s) 679
SfcI CTRYAG 1 cut(s) 736
SfoI GGCGCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 1 cut(s) 610
SspDI GGCGCC 1 cut(s) 425
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 37, 181
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 1 cut(s) 459
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 610
Tru1I TTAA 3 cut(s) 393, 537, 660
Tru9I TTAA 3 cut(s) 393, 537, 660
TscAI CASTG 3 cut(s) 70, 445, 634
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 2 cut(s) 186, 198
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 4 cut(s) 9, 220, 247, 435
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 3 cut(s) 70, 445, 634
Van91I CCANNNNNTGG 1 cut(s) 38
VneI GTGCAC 1 cut(s) 66
XagI CCTNNNNNAGG 1 cut(s) 645
XapI RAATTY 1 cut(s) 610
XceI RCATGY 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.