Rorug05G0424800

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016133
Physical Location & Seq
Forward (+)
59011600 .. 59012347
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0424800.1

Sequence Viewer

Length: 645 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGTCGAGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCCCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGCGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACATCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAATAAGTCCACTTCGGATGTTCATGTGCCCATTCAAAGATCAGGGCTTGTTGGTGATGACAATCTGGGGAACTATGGTGGTTATGGATCTATGAACATGGGGAAGAGAGCTAGAGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGACAACATGAAGACTACTTCCGATGAAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTTTGGAGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

214

Amino Acids

23.97

Weight (kDa)

6.31

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 1.3e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30505
fragaria_vesca FvH4_3g40830
malus_domestica MD03G1049700.v1.1 MD11G1051900.v1.1
prunus_persica Prupe.6G039500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073561
rosa_laevigata RLG00000036395
rosa_multiflora Rmu_ssc0000226.1_g000002
rosa_roxburghii Rroxscaffold_1G00007720
rosa_rugosa Rorug05G0424800
rosa_samantha Rh5AG481900 Rh5BG502600 Rh5CG525700 Rh5DG514800
rosa_wichuraiana Rw5G044760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 2 cut(s) 78, 160
AciI CCGC 2 cut(s) 82, 561
AclWI GGATC 2 cut(s) 188, 364
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 4 cut(s) 220, 305, 393, 488
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 1 cut(s) 477
AjuI GAANNNNNNNTTGG 3 cut(s) 116, 148, 616
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 6 cut(s) 130, 193, 380, 401, 595, 620
AluI AGCT 6 cut(s) 130, 193, 380, 401, 595, 620
Alw21I GWGCWC 1 cut(s) 597
AlwI GGATC 2 cut(s) 188, 364
Ama87I CYCGRG 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 415
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 335, 467, 527
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 597
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 597
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 479
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 2 cut(s) 381, 414
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 78, 160
BlpI GCTNAGC 1 cut(s) 596
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 3 cut(s) 6, 155, 638
BmrFI CCNGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 545
BpmI CTGGAG 2 cut(s) 173, 423
Bpu1102I GCTNAGC 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 611
BsaBI GATNNNNATC 2 cut(s) 116, 330
BsaJI CCNNGG 2 cut(s) 27, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse8I GATNNNNATC 2 cut(s) 116, 330
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 2 cut(s) 27, 123
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 2 cut(s) 116, 330
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMII CTCAG 2 cut(s) 411, 610
BseRI GAGGAG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 597
Bsp143I GATC 6 cut(s) 106, 180, 210, 308, 356, 472
Bsp1720I GCTNAGC 1 cut(s) 596
BspACI CCGC 2 cut(s) 82, 561
BspCNI CTCAG 2 cut(s) 410, 609
BspLI GGNNCC 3 cut(s) 6, 155, 638
BspMI ACCTGC 2 cut(s) 78, 160
BspPI GGATC 2 cut(s) 188, 364
BssECI CCNNGG 2 cut(s) 27, 123
BssMI GATC 6 cut(s) 106, 180, 210, 308, 356, 472
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 501, 569
Bst6I CTCTTC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 397, 596
BstF5I GGATG 2 cut(s) 37, 292
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 6 cut(s) 109, 183, 213, 311, 359, 475
BstMBI GATC 6 cut(s) 106, 180, 210, 308, 356, 472
BstMWI GCNNNNNNNGC 2 cut(s) 79, 606
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 2 cut(s) 180, 356
BstYI RGATCY 2 cut(s) 180, 356
BtsCI GGATG 2 cut(s) 37, 292
BtsIMutI CAGTG 2 cut(s) 497, 640
BveI ACCTGC 2 cut(s) 78, 160
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 7 cut(s) 70, 293, 367, 433, 454, 512, 535
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 397, 596
DpnI GATC 6 cut(s) 108, 182, 212, 310, 358, 474
DpnII GATC 6 cut(s) 106, 180, 210, 308, 356, 472
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 2 cut(s) 256, 597
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 595
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 595
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 2 cut(s) 256, 597
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 7 cut(s) 73, 296, 370, 436, 457, 515, 538
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 366, 432, 453, 511, 534
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 597
FspBI CTAG 2 cut(s) 381, 414
GlaI GCGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 173, 423
HhaI GCGC 1 cut(s) 169
Hin1II CATG 7 cut(s) 73, 296, 370, 436, 457, 515, 538
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 2 cut(s) 94, 117
HphI GGTGA 3 cut(s) 335, 467, 527
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 3 cut(s) 111, 286, 550
Hpy188III TCNNGA 4 cut(s) 55, 220, 241, 257
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 2 cut(s) 501, 569
HpyCH4V TGCA 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 606
HpyF3I CTNAG 2 cut(s) 397, 596
Hsp92II CATG 7 cut(s) 73, 296, 370, 436, 457, 515, 538
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 6 cut(s) 106, 180, 210, 308, 356, 472
LmnI GCTCC 3 cut(s) 84, 127, 636
MaeI CTAG 2 cut(s) 381, 414
MaeIII GTNAC 1 cut(s) 563
MalI GATC 6 cut(s) 108, 182, 212, 310, 358, 474
MboI GATC 6 cut(s) 106, 180, 210, 308, 356, 472
MboII GAAGA 4 cut(s) 280, 385, 482, 550
MflI RGATCY 2 cut(s) 180, 356
MhlI GDGCHC 3 cut(s) 256, 300, 597
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 7 cut(s) 22, 29, 171, 398, 458, 511, 604
MroXI GAANNNNTTC 1 cut(s) 415
MslI CAYNNNNRTG 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 193, 401
MspR9I CCNGG 1 cut(s) 479
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 2 cut(s) 79, 606
NdeII GATC 6 cut(s) 106, 180, 210, 308, 356, 472
NlaIII CATG 7 cut(s) 73, 296, 370, 436, 457, 515, 538
NlaIV GGNNCC 3 cut(s) 6, 155, 638
NmuCI GTSAC 1 cut(s) 563
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 570
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 1 cut(s) 117
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 477
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 3 cut(s) 6, 155, 638
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 403, 435
PsuI RGATCY 2 cut(s) 180, 356
PvuII CAGCTG 2 cut(s) 193, 401
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 570
SacI GAGCTC 1 cut(s) 597
Sau3AI GATC 6 cut(s) 106, 180, 210, 308, 356, 472
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 3 cut(s) 256, 300, 597
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
SpeI ACTAGT 1 cut(s) 413
SsiI CCGC 2 cut(s) 82, 561
SspMI CTAG 2 cut(s) 381, 414
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 501, 569
TaqI TCGA 2 cut(s) 54, 213
TfiI GAWTC 1 cut(s) 117
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 6 cut(s) 281, 377, 442, 449, 551, 567
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 2 cut(s) 381, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.