Rw5G044760

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016133
Physical Location & Seq
Reverse (-)
78467809 .. 78468570
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044760.1

Sequence Viewer

Length: 621 bp
ATGAGGGAAGATCAGTTTGGATCTTTGCCACCCCCTCCCGGCAGCTCCAAGTCAAAGCAGAGCAGCAGGGCCAGCGCACGCCATGTTGCCTTCTCGGAAACTTCCACTCCAAGTACCAAGCCTGATGGAGCCTTCCTCCCCCCACCAGATTTAGATGGAGAACGTCCAAAGCGCTTCCGTCCACGTGCCTATGCATGCTGTGCATGGGGTTGCATGTTCATTTTCGCCTTCGTCCTCCTCGCCCTCATCTTAGGTTTTGTATTCATCTCCATCTTCCATTCTTACCTACCTGAAATCAAGAAGGTGAGTTTGAAGGGAAAAGTGGACTTGCTAGTGGAGTTTAATAACAAGAACGAGAAAACCGAGCTCAAATTCGGGTTGTTCAAAGTCAGTGCTTCTGCTGCTCATGTCGATCTGGATAAAGAAGACGCAGACCTCCTGAAACAAGACATTCAAAACCATGAAGTTGATCTGACACTGACCTTGGTCGGAAGTGTTAGCTTCCCAATCTCAGGGATTATGATGAATAAGATTCCGATCATGGCGTCATGTGATTGCAAGCAAACGGAAGTTGATTTTGGGAATAATGCAAAGTGTGATTATCGGATTTTCCAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

206

Amino Acids

22.86

Weight (kDa)

7.6

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30505
fragaria_vesca FvH4_3g40830
malus_domestica MD03G1049700.v1.1 MD11G1051900.v1.1
prunus_persica Prupe.6G039500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073561
rosa_laevigata RLG00000036395
rosa_multiflora Rmu_ssc0000226.1_g000002
rosa_roxburghii Rroxscaffold_1G00007720
rosa_rugosa Rorug05G0424800
rosa_samantha Rh5AG481900 Rh5BG502600 Rh5CG525700 Rh5DG514800
rosa_wichuraiana Rw5G044760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 371
AcvI CACGTG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 545
AfaI GTAC 1 cut(s) 115
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 38, 512
AgsI TTSAA 3 cut(s) 313, 385, 455
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 561, 593
AluBI AGCT 3 cut(s) 45, 367, 501
AluI AGCT 3 cut(s) 45, 367, 501
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 1 cut(s) 28
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 42, 63, 401
ApoI RAATTY 1 cut(s) 371
AspLEI GCGC 2 cut(s) 77, 174
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 316
BanII GRGCYC 1 cut(s) 369
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 3 cut(s) 54, 75, 388
BccI CCATC 3 cut(s) 119, 149, 278
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 175
BisI GCNGC 3 cut(s) 43, 64, 402
BlsI GCNGC 3 cut(s) 44, 65, 403
Bme1390I CCNGG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 39
BoxI GACNNNNGTC 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 432
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpuMI CCSGG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 512
Bse8I GATNNNNATC 1 cut(s) 536
BseDI CCNNGG 1 cut(s) 483
BseJI GATNNNNATC 1 cut(s) 536
BseLI CCNNNNNNNGG 2 cut(s) 38, 512
BseMII CTCAG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 3 cut(s) 54, 75, 388
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 38, 512
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 5 cut(s) 10, 20, 412, 469, 537
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 524
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 5 cut(s) 10, 20, 412, 469, 537
BssNI GRCGYC 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 483
BstACI GRCGYC 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 73, 79, 196, 560
BstDEI CTNAG 2 cut(s) 250, 511
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 2 cut(s) 77, 174
BstKTI GATC 5 cut(s) 13, 23, 415, 472, 540
BstMBI GATC 5 cut(s) 10, 20, 412, 469, 537
BstMWI GCNNNNNNNGC 3 cut(s) 72, 200, 401
BstNSI RCATGY 2 cut(s) 198, 217
BstPAI GACNNNNGTC 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 54, 75, 388
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 397, 476
Cac8I GCNNGC 4 cut(s) 73, 79, 196, 560
CfoI GCGC 2 cut(s) 77, 174
Cfr13I GGNCC 1 cut(s) 69
CseI GACGC 2 cut(s) 437, 534
Csp6I GTAC 1 cut(s) 114
CviAII CATG 8 cut(s) 83, 195, 204, 214, 407, 461, 541, 549
CviJI RGCY 6 cut(s) 45, 71, 121, 131, 367, 501
CviKI_1 RGCY 6 cut(s) 45, 71, 121, 131, 367, 501
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 250, 511
DpnI GATC 5 cut(s) 12, 22, 414, 471, 539
DpnII GATC 5 cut(s) 10, 20, 412, 469, 537
Ecl136II GAGCTC 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 369
Eco47III AGCGCT 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 367
Eco72I CACGTG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 8 cut(s) 86, 198, 207, 217, 410, 464, 544, 552
FatI CATG 8 cut(s) 82, 194, 203, 213, 406, 460, 540, 548
Fnu4HI GCNGC 3 cut(s) 43, 64, 402
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 43, 64, 402
FspBI CTAG 1 cut(s) 332
GlaI GCGC 2 cut(s) 76, 173
GluI GCNGC 3 cut(s) 43, 64, 402
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 39
HgaI GACGC 2 cut(s) 437, 534
HhaI GCGC 2 cut(s) 77, 174
Hin1I GRCGYC 1 cut(s) 545
Hin1II CATG 8 cut(s) 86, 198, 207, 217, 410, 464, 544, 552
Hin6I GCGC 2 cut(s) 75, 172
HinP1I GCGC 2 cut(s) 75, 172
HinfI GANTC 1 cut(s) 532
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 182, 325
Hpy188I TCNGA 5 cut(s) 97, 474, 491, 537, 606
Hpy188III TCNNGA 3 cut(s) 298, 416, 439
Hpy8I GTNNAC 2 cut(s) 182, 325
HpyAV CCTTC 5 cut(s) 100, 142, 238, 295, 307
HpyCH4IV ACGT 2 cut(s) 163, 184
HpyCH4V TGCA 5 cut(s) 194, 203, 213, 558, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 200, 401
HpyF3I CTNAG 2 cut(s) 250, 511
HpySE526I ACGT 2 cut(s) 163, 184
Hsp92I GRCGYC 1 cut(s) 545
Hsp92II CATG 8 cut(s) 86, 198, 207, 217, 410, 464, 544, 552
HspAI GCGC 2 cut(s) 75, 172
Kzo9I GATC 5 cut(s) 10, 20, 412, 469, 537
LmnI GCTCC 2 cut(s) 50, 128
LpnPI CCDG 9 cut(s) 52, 52, 85, 135, 159, 303, 401, 452, 498
Lsp1109I GCAGC 3 cut(s) 54, 75, 388
MaeI CTAG 1 cut(s) 332
MaeII ACGT 2 cut(s) 163, 184
MalI GATC 5 cut(s) 12, 22, 414, 471, 539
MboI GATC 5 cut(s) 10, 20, 412, 469, 537
MboII GAAGA 3 cut(s) 20, 265, 437
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 6 cut(s) 45, 146, 245, 248, 254, 446
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 72, 200, 401
NciI CCSGG 1 cut(s) 39
NdeII GATC 5 cut(s) 10, 20, 412, 469, 537
NlaIII CATG 8 cut(s) 86, 198, 207, 217, 410, 464, 544, 552
NlaIV GGNNCC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 2 cut(s) 198, 217
PaeI GCATGC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 1 cut(s) 532
PkrI GCNGC 3 cut(s) 44, 65, 403
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
Ppu21I YACGTR 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 369
PspCI CACGTG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 43, 64, 402
Sau3AI GATC 5 cut(s) 10, 20, 412, 469, 537
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 369
SphI GCATGC 1 cut(s) 198
Sse9I AATT 1 cut(s) 371
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 483
TaiI ACGT 2 cut(s) 166, 187
TaqI TCGA 1 cut(s) 411
TasI AATT 1 cut(s) 371
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 397, 483
TseI GCWGC 3 cut(s) 42, 63, 401
TspDTI ATGAA 4 cut(s) 208, 253, 477, 539
TspGWI ACGGA 2 cut(s) 167, 581
TspRI CASTG 2 cut(s) 397, 483
XapI RAATTY 1 cut(s) 371
XceI RCATGY 2 cut(s) 198, 217
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.