AT2G30890

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008301
Physical Location & Seq
Forward (+)
13147621 .. 13149819
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30890.1

Sequence Viewer

Length: 774 bp
ATGGAGATTCATCATCAACTCTTAGTCTCTCTCCTCTTCCTCCTCCTTCCCCTATGCTCCTCCCAAGAAAACACCAGAAGCTTGGCCATTGATGTCAATGGTCCAGTCGAAACTTCTCCTATCTCCGAGAAACTAAATCCAAAGCTTGTGTACGAAATCAAAGTGCATGGCTTTATGCTTTGGGCAGCGATGGGTGTTTTGATGCCAATTGGTATAATCTCCATCAGATTAATGTCTATCAAAGACCAACCTATAATCACTCTTCGACGACTCTTCTTTCTTCATGTCACTTCTCAGATGGTTGCAGTGATACTTGTGACAATAGGGGCAGTAATGTCAGTAATAAACTTCAACAATTCCTTCAGTAATCATCACCAACAGCTTGGAATTGGACTTTACGTCATTGTATGGTTCCAAGCTCTTCTTGGCTTCCTCCGACCTCCAAGAGAAGAAAAAGCTAGAAGGAAGTGGTTTGTAGGACATTGGATATTAGGAACATCAATTGCTATTCTTGGGATAATAAACATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGACCATACTCTTCACTGCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATGGTCTTATATCCAAAGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAACATCTCAACCGCAGAGACTGGCCATGGATACGAGGTCGAAGAGAGTAAACCGGAGTTAGAGAAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

257

Amino Acids

29.06

Weight (kDa)

8.96

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 55 - 181 1e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 714
AcoI YGGCCR 2 cut(s) 84, 724
AcuI CTGAAG 1 cut(s) 346
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 2 cut(s) 352, 635
AhdI GACNNNNNGTC 1 cut(s) 398
AluBI AGCT 6 cut(s) 81, 145, 382, 419, 458, 665
AluI AGCT 6 cut(s) 81, 145, 382, 419, 458, 665
Alw26I GTCTC 2 cut(s) 31, 713
AlwNI CAGNNNCTG 1 cut(s) 722
AoxI GGCC 2 cut(s) 84, 724
ApeKI GCWGC 1 cut(s) 185
AseI ATTAAT 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 101, 582
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 2 cut(s) 101, 582
BalI TGGCCA 2 cut(s) 86, 726
BbvI GCAGC 1 cut(s) 197
BccI CCATC 3 cut(s) 184, 230, 292
BciVI GTATCC 1 cut(s) 725
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 2 cut(s) 31, 713
BfaI CTAG 1 cut(s) 459
BfuI GTATCC 1 cut(s) 725
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 2 cut(s) 101, 582
BmeRI GACNNNNNGTC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 101, 582
BmiI GGNNCC 1 cut(s) 413
BmsI GCATC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 618, 727
BsaWI WCCGGW 1 cut(s) 754
Bse1I ACTGG 2 cut(s) 104, 727
BseDI CCNNGG 2 cut(s) 618, 727
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 104, 727
BseRI GAGGAG 3 cut(s) 23, 32, 49
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 582
BshFI GGCC 2 cut(s) 86, 726
BsiSI CCGG 1 cut(s) 755
BsmAI GTCTC 2 cut(s) 31, 713
BsnI GGCC 2 cut(s) 86, 726
Bsp143I GATC 1 cut(s) 691
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 1 cut(s) 714
BspANI GGCC 2 cut(s) 86, 726
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 413
BspQI GCTCTTC 1 cut(s) 426
BsrI ACTGG 2 cut(s) 104, 727
BssECI CCNNGG 2 cut(s) 618, 727
BssMI GATC 1 cut(s) 691
BssT1I CCWWGG 2 cut(s) 618, 727
Bst6I CTCTTC 6 cut(s) 41, 267, 278, 426, 596, 738
BstDEI CTNAG 2 cut(s) 22, 294
BstDSI CCRYGG 1 cut(s) 727
BstKTI GATC 1 cut(s) 694
BstMAI GTCTC 2 cut(s) 31, 713
BstMBI GATC 1 cut(s) 691
BstV1I GCAGC 1 cut(s) 197
BstXI CCANNNNNNTGG 2 cut(s) 82, 383
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 2 cut(s) 86, 726
BtgI CCRYGG 1 cut(s) 727
BtgZI GCGATG 1 cut(s) 203
BtsI GCAGTG 2 cut(s) 312, 594
BtsIMutI CAGTG 2 cut(s) 312, 594
CaiI CAGNNNCTG 1 cut(s) 722
Cfr13I GGNCC 2 cut(s) 101, 582
Csp6I GTAC 1 cut(s) 151
CviAII CATG 3 cut(s) 167, 284, 728
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 22, 294
DpnI GATC 1 cut(s) 693
DpnII GATC 1 cut(s) 691
DriI GACNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 2 cut(s) 84, 724
Eam1104I CTCTTC 6 cut(s) 41, 267, 278, 426, 596, 738
Eam1105I GACNNNNNGTC 1 cut(s) 398
EarI CTCTTC 6 cut(s) 41, 267, 278, 426, 596, 738
Eco130I CCWWGG 2 cut(s) 618, 727
Eco47I GGWCC 2 cut(s) 101, 582
Eco57I CTGAAG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 618, 727
ErhI CCWWGG 2 cut(s) 618, 727
FaeI CATG 3 cut(s) 170, 287, 731
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 3 cut(s) 166, 283, 727
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 459
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 2 cut(s) 86, 726
HapII CCGG 1 cut(s) 755
Hin1II CATG 3 cut(s) 170, 287, 731
HindIII AAGCTT 2 cut(s) 79, 143
HinfI GANTC 2 cut(s) 7, 270
HpaII CCGG 1 cut(s) 755
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 3 cut(s) 151, 539, 752
Hpy188I TCNGA 4 cut(s) 127, 227, 297, 437
Hpy188III TCNNGA 1 cut(s) 635
Hpy8I GTNNAC 3 cut(s) 151, 539, 752
Hpy99I CGWCG 1 cut(s) 270
HpyAV CCTTC 3 cut(s) 56, 370, 456
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 166, 305, 599
HpyF3I CTNAG 2 cut(s) 22, 294
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 3 cut(s) 170, 287, 731
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 1 cut(s) 691
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 88, 117, 519, 708, 768
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 286, 316
MalI GATC 1 cut(s) 693
MboI GATC 1 cut(s) 691
MboII GAAGA 8 cut(s) 28, 254, 265, 272, 413, 461, 583, 755
MfeI CAATTG 2 cut(s) 207, 501
MlsI TGGCCA 2 cut(s) 86, 726
MluCI AATT 4 cut(s) 207, 355, 387, 501
MluNI TGGCCA 2 cut(s) 86, 726
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 7 cut(s) 44, 50, 53, 70, 443, 450, 730
Mox20I TGGCCA 2 cut(s) 86, 726
MscI TGGCCA 2 cut(s) 86, 726
MseI TTAA 2 cut(s) 230, 672
Msp20I TGGCCA 2 cut(s) 86, 726
MspI CCGG 1 cut(s) 755
MunI CAATTG 2 cut(s) 207, 501
NcoI CCATGG 1 cut(s) 727
NdeII GATC 1 cut(s) 691
NlaIII CATG 3 cut(s) 170, 287, 731
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 2 cut(s) 286, 316
PciSI GCTCTTC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 2 cut(s) 101, 582
PstNI CAGNNNCTG 1 cut(s) 722
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 2 cut(s) 230, 672
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 691
Sau96I GGNCC 2 cut(s) 101, 582
SchI GAGTC 1 cut(s) 264
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 2 cut(s) 101, 582
Sse9I AATT 4 cut(s) 207, 355, 387, 501
SsiI CCGC 1 cut(s) 714
SspMI CTAG 1 cut(s) 459
StyI CCWWGG 2 cut(s) 618, 727
TaiI ACGT 1 cut(s) 402
TaqI TCGA 3 cut(s) 108, 265, 741
TasI AATT 4 cut(s) 207, 355, 387, 501
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 230, 672
Tru9I TTAA 2 cut(s) 230, 672
TscAI CASTG 2 cut(s) 312, 601
TseFI GTSAC 2 cut(s) 286, 316
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 2 cut(s) 286, 316
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 676
TspRI CASTG 2 cut(s) 312, 601
VpaK11BI GGWCC 2 cut(s) 101, 582
VspI ATTAAT 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.