Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008301

Physical Location & Seq

Genomic Coordinates Reverse (-)

55127524 .. 55129844

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0430100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATTGAAACAGAAAGAAGAAGACCTTTGAGCAATTCAAAGGAATTCAAGATGTGGAATTTATATAAGGGGTTCAAAACAGATAACTTGCCGGAAATGATCAGAAAAAATGCGTTTGGGCACCAGTACAATGGCCAGCAGTGTCTAAGTGAGCTTAACTTGGTTGATTACAGCAGCTATGGCTGGTTGCTTCTTATGGATTACATATTGGCTAAAAGCATTTCAGCAAGTCAGGTAGATATATGGCGCCTGTCGCAGCTAAAGAGACATTCTACACCTCAGGATGTTTGCCAAGATTTTGCACCAGTGGCAAAGAATGATGGAAGCAGCAACTTTCAAATTAAGACATTTGTAAATGCCATAGCAGCACCGATGTACCTAATTGGATCAAAATCGCTCATTTCTAATACTCCCGCGGCAAAGCGTGGGCATAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

146

Amino Acids

16.7

Weight (kDa)

9.42

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30890
fragaria_vesca	FvH4_6g38580 FvH4_6g38580 FvH4_6g38580 FvH4_6g38580 FvH4_6g38580
malus_domestica	MD09G1149600.v1.1 MD17G1136300.v1.1
prunus_persica	Prupe.3G176500_v2.0.a1 Prupe.3G176500_v2.0.a1 Prupe.3G176500_v2.0.a1
pyrus_communis	pycom17g13000
rosa_chinensis	RchiOBHm_Chr2g0151991
rosa_laevigata	RLG00000020597
rosa_multiflora	Rmu_sc0017048.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096070
rosa_rugosa	Rorug02G0430100
rosa_samantha	Rh2AG490800 Rh2BG503100 Rh2CG477200 Rh2DG514300
rosa_wichuraiana	Rw0G020200 Rw2G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	120, 246
AccII	CGCG	1 cut(s)	416
AciI	CCGC	2 cut(s)	414, 416
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	44, 58
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	2 cut(s)	128, 377
AgsI	TTSAA	5 cut(s)	8, 39, 49, 76, 338
AluBI	AGCT	3 cut(s)	154, 177, 259
AluI	AGCT	3 cut(s)	154, 177, 259
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	4 cut(s)	174, 256, 327, 365
ApoI	RAATTY	2 cut(s)	44, 58
AspLEI	GCGC	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	123
BaeI	ACNNNNGTAYC	2 cut(s)	359, 392
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	2 cut(s)	120, 246
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	4 cut(s)	186, 268, 339, 377
BccI	CCATC	1 cut(s)	314
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	439
BfoI	RGCGCY	1 cut(s)	250
BisI	GCNGC	5 cut(s)	175, 257, 328, 366, 417
BlsI	GCNGC	5 cut(s)	176, 258, 329, 367, 418
BmiI	GGNNCC	2 cut(s)	122, 248
BpiI	GAAGAC	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	414
Bse1I	ACTGG	2 cut(s)	124, 305
Bse21I	CCTNAGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	124, 305
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	4 cut(s)	186, 268, 339, 377
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	2 cut(s)	120, 246
BsiSI	CCGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	99, 386
BspACI	CCGC	2 cut(s)	414, 416
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	2 cut(s)	122, 248
BspPI	GGATC	1 cut(s)	394
BspT107I	GGYRCC	2 cut(s)	120, 246
BsrI	ACTGG	2 cut(s)	124, 305
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	2 cut(s)	99, 386
BssNI	GRCGYC	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	146, 279
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	416
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	102, 389
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	2 cut(s)	99, 386
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 253, 308, 365
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	4 cut(s)	186, 268, 339, 377
BstV2I	GAAGAC	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	146, 312
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	249
Cfr42I	CCGCGG	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	127, 376
CviJI	RGCY	6 cut(s)	135, 154, 177, 183, 212, 259
CviKI_1	RGCY	6 cut(s)	135, 154, 177, 183, 212, 259
CviQI	GTAC	2 cut(s)	127, 376
DdeI	CTNAG	2 cut(s)	146, 279
DinI	GGCGCC	1 cut(s)	248
DpnI	GATC	2 cut(s)	101, 388
DpnII	GATC	2 cut(s)	99, 386
EaeI	YGGCCR	1 cut(s)	133
Eco81I	CCTNAGG	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	44
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
FaiI	YATR	9 cut(s)	64, 66, 180, 197, 206, 242, 244, 362, 432
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FauI	CCCGC	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	175, 257, 328, 366, 417
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	5 cut(s)	175, 257, 328, 366, 417
FspBI	CTAG	1 cut(s)	439
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	5 cut(s)	175, 257, 328, 366, 417
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	2 cut(s)	49, 281
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 253, 308, 365
HpyF3I	CTNAG	2 cut(s)	146, 279
Hsp92I	GRCGYC	1 cut(s)	247
HspAI	GCGC	1 cut(s)	247
KasI	GGCGCC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	99
KspI	CCGCGG	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	99, 386
LpnPI	CCDG	8 cut(s)	105, 137, 149, 169, 218, 263, 266, 318
Lsp1109I	GCAGC	4 cut(s)	186, 268, 339, 377
MaeI	CTAG	1 cut(s)	439
MalI	GATC	2 cut(s)	101, 388
MboI	GATC	2 cut(s)	99, 386
MboII	GAAGA	2 cut(s)	30, 33
MhlI	GDGCHC	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	34, 44, 58, 339, 381, 433
MluNI	TGGCCA	1 cut(s)	135
Mly113I	GGCGCC	1 cut(s)	247
MnlI	CCTC	1 cut(s)	288
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	156, 342
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	180, 253, 308, 365
NarI	GGCGCC	1 cut(s)	247
NdeII	GATC	2 cut(s)	99, 386
NlaIV	GGNNCC	2 cut(s)	122, 248
PkrI	GCNGC	5 cut(s)	176, 258, 329, 367, 418
PluTI	GGCGCC	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	122, 248
RsaI	GTAC	2 cut(s)	128, 377
RsaNI	GTAC	2 cut(s)	127, 376
SacII	CCGCGG	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	156, 342
SatI	GCNGC	5 cut(s)	175, 257, 328, 366, 417
Sau3AI	GATC	2 cut(s)	99, 386
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	28, 156, 179, 237, 261, 280, 381
SfoI	GGCGCC	1 cut(s)	248
Sfr303I	CCGCGG	1 cut(s)	417
SgrBI	CCGCGG	1 cut(s)	417
Sse9I	AATT	6 cut(s)	34, 44, 58, 339, 381, 433
SsiI	CCGC	2 cut(s)	414, 416
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	439
TasI	AATT	6 cut(s)	34, 44, 58, 339, 381, 433
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	156, 342
Tru9I	TTAA	2 cut(s)	156, 342
TscAI	CASTG	2 cut(s)	146, 312
TseI	GCWGC	4 cut(s)	174, 256, 327, 365
TspRI	CASTG	2 cut(s)	146, 312
XapI	RAATTY	2 cut(s)	44, 58
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.