Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017048.1

Orthogroup ID

OG0008301

Physical Location & Seq

Genomic Coordinates Forward (+)

11680 .. 13108

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017048.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgaggtttctgcacaacttgggtttcttctgtattctttttcttgtttcaccacttttcacttcatcccaagaacatgtgaaaggtgtaagcaatcacaaagaacacattcataagcacatgagtcgcaaactatcattcgaaattaagcttcatgggtttctgctttgggcttcaatgggcttcttgacgccggtaggactactggccattagaatgtcacacagagtgcaatgtagaagaagactcagaattctattctatgttcatgctttatcagagatactctctctacttctttcaacagcaggagctgtaatgtccttcagaaacttcaacaactccttcaacaataggcaccaaaggattggggttggcctctatggtctgatatggctgcaagctctaattggcattgtaaggccacaaagggggtccaaaggaagaagcatgtggtttttggtgcattggatgcttggaactgcagtatctctgcttggggtactcaacatatacacaggtttagtagcctaccaagagaagacatcaaaaggcataaagttttggaccatagttttcacagctgaagtatgtttcattaccttcttctacctgttccaagacaaatgggtttatatacataagcaaggagtgagtttgggtaatgaatccaaaggggccaccacagatcaagtggttttgccaagagacaagcaaaaggaagttgccccggcagagtcttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

248

Amino Acids

28.42

Weight (kDa)

10.18

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30890
fragaria_vesca	FvH4_6g38580 FvH4_6g38580 FvH4_6g38580 FvH4_6g38580 FvH4_6g38580
malus_domestica	MD09G1149600.v1.1 MD17G1136300.v1.1
prunus_persica	Prupe.3G176500_v2.0.a1 Prupe.3G176500_v2.0.a1 Prupe.3G176500_v2.0.a1
pyrus_communis	pycom17g13000
rosa_chinensis	RchiOBHm_Chr2g0151991
rosa_laevigata	RLG00000020597
rosa_multiflora	Rmu_sc0017048.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096070
rosa_rugosa	Rorug02G0430100
rosa_samantha	Rh2AG490800 Rh2BG503100 Rh2CG477200 Rh2DG514300
rosa_wichuraiana	Rw0G020200 Rw2G040340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	310, 606
AcyI	GRCGYC	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	177, 303, 337, 349
AluBI	AGCT	4 cut(s)	151, 314, 404, 584
AluI	AGCT	4 cut(s)	151, 314, 404, 584
Alw26I	GTCTC	1 cut(s)	702
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	4 cut(s)	207, 376, 422, 678
ApeKI	GCWGC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	435, 567, 678
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	2 cut(s)	435, 567
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	250, 548
BbvI	GCAGC	1 cut(s)	384
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	1 cut(s)	702
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	2 cut(s)	435, 567
BmgT120I	GGNCC	3 cut(s)	435, 567, 678
BmiI	GGNNCC	3 cut(s)	359, 436, 679
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	2 cut(s)	250, 548
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu14I	TTCGAA	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	731
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	729
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	2 cut(s)	65, 477
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	384
BshFI	GGCC	4 cut(s)	209, 378, 424, 680
BshNI	GGYRCC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	194, 731
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	702
BsnI	GGCC	4 cut(s)	209, 378, 424, 680
Bsp119I	TTCGAA	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	688
BspANI	GGCC	4 cut(s)	209, 378, 424, 680
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	359, 436, 679
BspMAI	CTGCAG	1 cut(s)	487
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	1 cut(s)	688
BssNI	GRCGYC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	472
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	65, 477
BstKTI	GATC	1 cut(s)	691
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	1 cut(s)	688
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNSI	RCATGY	2 cut(s)	80, 454
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	384
BstV2I	GAAGAC	2 cut(s)	250, 548
BstXI	CCANNNNNNTGG	1 cut(s)	368
BsuRI	GGCC	4 cut(s)	209, 378, 424, 680
BtsCI	GGATG	2 cut(s)	65, 477
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	435, 567, 678
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	5 cut(s)	77, 121, 155, 269, 451
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	1 cut(s)	690
DpnII	GATC	1 cut(s)	688
DraIII	CACNNNGTG	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	435, 567
Eco57I	CTGAAG	2 cut(s)	310, 606
EcoRI	GAATTC	1 cut(s)	252
FaeI	CATG	5 cut(s)	80, 124, 158, 272, 454
FatI	CATG	5 cut(s)	76, 120, 154, 268, 450
Fnu4HI	GCNGC	1 cut(s)	398
FokI	GGATG	2 cut(s)	52, 484
Fsp4HI	GCNGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	398
HaeIII	GGCC	4 cut(s)	209, 378, 424, 680
HapII	CCGG	2 cut(s)	194, 731
HgaI	GACGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	5 cut(s)	80, 124, 158, 272, 454
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	4 cut(s)	124, 246, 668, 737
HpaII	CCGG	2 cut(s)	194, 731
HphI	GGTGA	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	251, 280, 329, 390
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	334, 355, 613
HpyCH4V	TGCA	5 cut(s)	13, 232, 400, 466, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	5 cut(s)	80, 124, 158, 272, 454
Kzo9I	GATC	1 cut(s)	688
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	5 cut(s)	191, 207, 294, 504, 626
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	1 cut(s)	690
MboI	GATC	1 cut(s)	688
MboII	GAAGA	6 cut(s)	19, 252, 255, 456, 553, 598
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	3 cut(s)	144, 252, 408
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	3 cut(s)	133, 240, 746
MnlI	CCTC	1 cut(s)	389
Mox20I	TGGCCA	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	2 cut(s)	147, 745
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	2 cut(s)	194, 731
MspR9I	CCNGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	1 cut(s)	472
NciI	CCSGG	1 cut(s)	731
NdeII	GATC	1 cut(s)	688
NlaIII	CATG	5 cut(s)	80, 124, 158, 272, 454
NlaIV	GGNNCC	3 cut(s)	359, 436, 679
NmuCI	GTSAC	1 cut(s)	219
NspI	RCATGY	2 cut(s)	80, 454
NspV	TTCGAA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	399
PleI	GAGTC	3 cut(s)	132, 240, 745
PpsI	GAGTC	3 cut(s)	132, 240, 745
PscI	ACATGT	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	359, 436, 679
PspPI	GGNCC	3 cut(s)	435, 567, 678
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	147, 745
SatI	GCNGC	1 cut(s)	398
Sau3AI	GATC	1 cut(s)	688
Sau96I	GGNCC	3 cut(s)	435, 567, 678
SchI	GAGTC	3 cut(s)	133, 240, 746
ScrFI	CCNGG	1 cut(s)	731
SetI	ASST	9 cut(s)	8, 88, 153, 316, 406, 523, 586, 605, 615
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	2 cut(s)	435, 567
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	144, 252, 408
StyD4I	CCNGG	1 cut(s)	729
TaqI	TCGA	1 cut(s)	141
TasI	AATT	3 cut(s)	144, 252, 408
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	2 cut(s)	147, 745
Tru9I	TTAA	2 cut(s)	147, 745
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	6 cut(s)	54, 101, 143, 257, 586, 681
VpaK11BI	GGWCC	2 cut(s)	435, 567
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	2 cut(s)	80, 454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	691
XmnI	GAANNNNTTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.