FvH4_6g38580

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008301
Physical Location & Seq
Reverse (-)
30526486 .. 30528426
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38580.t5

Sequence Viewer

Length: 750 bp
ATGAGGTTTCAGCACAAATTGGGTTTCTTCTGTATTCTTATTCTTGTTTCACCACTTTTCACTTCATCCCAAGAACATGTGAAAGGTGTAAGCAATCGCAAAGAACAAATTCATAAGAAGCAGATGAGTCGTAAACTATTGTTCGAGGTTAAGCTTCATGGGTTCCTACTTTGGGCTTCAATGGGGTTCTTGATGCCGGTAGGACTACTTGCCATTAGAATGTCACACAGAGTGCATTGTAGAAGAAGACTCAGAATTCTATTCTATGTTCATGCTTTATCAGAGATACTCTCTCTACTTCTTTCAACAGCAGGAGCTGTAATGTCCTTCAGAAACTTCAACAACTCCTTCAACAATAAGCACCAAAGGCTTGGGGTTGGCCTCTATGGTCTGATATGGCTGCAAGCTCTAATTGGCATTGTAAGGCCACAAAGGGATTCCAGGGGAAGAAGAATGTGGTTTTTGGTGCATTGGATACTTGGAACTGCATTATCTGTGCTTGGGGTACTCAACATATACACAGGTTTAGTAGCCTACCATGAGAAGACATCAAAAGGCATAAAGTTTTGGATCATAGTTTTCACAGCTGAAGTCTGTTTCATTACCTTCTTCTACCTGTTCCAAGAGAAATGGGATTATATACAAAAGAAAGGTGTGACTTTGGGCAATGAATCAAAAAGGGCTACCATAAATCAAGTGGTTTTGCCAAGAGACAAGCAAAAAGAAGTTGCACTGGCAGAGACTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

250

Amino Acids

28.9

Weight (kDa)

10.42

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 50 - 174 1.7e-08 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 578
AcsI RAATTY 2 cut(s) 108, 255
AcuI CTGAAG 2 cut(s) 313, 609
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 1 cut(s) 507
AfiI CCNNNNNNNGG 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 4 cut(s) 180, 306, 340, 352
AjnI CCWGG 1 cut(s) 440
AluBI AGCT 4 cut(s) 154, 317, 407, 587
AluI AGCT 4 cut(s) 154, 317, 407, 587
Alw26I GTCTC 2 cut(s) 705, 734
AlwI GGATC 1 cut(s) 578
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 379, 425
ApeKI GCWGC 1 cut(s) 400
ApoI RAATTY 2 cut(s) 108, 255
Asp700I GAANNNNTTC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 42
BbsI GAAGAC 2 cut(s) 253, 551
BbvI GCAGC 1 cut(s) 387
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 442
BciVI GTATCC 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 705, 734
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
Bme1390I CCNGG 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 253, 551
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BsaJI CCNNGG 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 738
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 265
BseNI ACTGG 1 cut(s) 738
BseXI GCAGC 1 cut(s) 387
BshFI GGCC 2 cut(s) 381, 427
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 2 cut(s) 705, 734
BsnI GGCC 2 cut(s) 381, 427
Bsp143I GATC 1 cut(s) 570
BspANI GGCC 2 cut(s) 381, 427
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 673
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 1 cut(s) 738
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 1 cut(s) 573
BstMAI GTCTC 2 cut(s) 705, 734
BstMBI GATC 1 cut(s) 570
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 442
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 387
BstV2I GAAGAC 2 cut(s) 253, 551
BstXI CCANNNNNNTGG 1 cut(s) 371
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 381, 427
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 731
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 196
Csp6I GTAC 1 cut(s) 506
CviAII CATG 4 cut(s) 77, 158, 272, 539
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 1 cut(s) 251
DpnI GATC 1 cut(s) 572
DpnII GATC 1 cut(s) 570
DraIII CACNNNGTG 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 313, 609
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 440
FaeI CATG 4 cut(s) 80, 161, 275, 542
FatI CATG 4 cut(s) 76, 157, 271, 538
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 401
GluI GCNGC 1 cut(s) 401
HaeIII GGCC 2 cut(s) 381, 427
HapII CCGG 1 cut(s) 197
Hin1II CATG 4 cut(s) 80, 161, 275, 542
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 4 cut(s) 127, 249, 437, 671
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 4 cut(s) 254, 283, 332, 393
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 3 cut(s) 337, 358, 616
HpyCH4V TGCA 5 cut(s) 235, 403, 469, 488, 731
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 4 cut(s) 80, 161, 275, 542
Kzo9I GATC 1 cut(s) 570
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 7 cut(s) 210, 297, 427, 454, 507, 629, 719
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 222, 655
MalI GATC 1 cut(s) 572
MboI GATC 1 cut(s) 570
MboII GAAGA 7 cut(s) 19, 255, 258, 459, 462, 556, 601
MluCI AATT 4 cut(s) 17, 108, 255, 411
MlyI GAGTC 2 cut(s) 136, 243
MnlI CCTC 2 cut(s) 139, 392
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 2 cut(s) 150, 748
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 442
MvaI CCWGG 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 1 cut(s) 570
NlaIII CATG 4 cut(s) 80, 161, 275, 542
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 2 cut(s) 222, 655
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 437, 671
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 2 cut(s) 135, 243
PpsI GAGTC 2 cut(s) 135, 243
PscI ACATGT 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 150, 748
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 1 cut(s) 570
SchI GAGTC 2 cut(s) 136, 243
ScrFI CCNGG 1 cut(s) 442
SfaNI GCATC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 4 cut(s) 17, 108, 255, 411
StyD4I CCNGG 1 cut(s) 440
TaqI TCGA 1 cut(s) 144
TasI AATT 4 cut(s) 17, 108, 255, 411
TfiI GAWTC 2 cut(s) 437, 671
Tru1I TTAA 2 cut(s) 150, 748
Tru9I TTAA 2 cut(s) 150, 748
TscAI CASTG 1 cut(s) 738
TseFI GTSAC 2 cut(s) 222, 655
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 2 cut(s) 222, 655
TspDTI ATGAA 6 cut(s) 54, 101, 146, 260, 589, 684
TspRI CASTG 1 cut(s) 738
XapI RAATTY 2 cut(s) 108, 255
XceI RCATGY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 694
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.