Rw2G040340

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008301
Physical Location & Seq
Reverse (-)
65845023 .. 65846805
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040340.1

Sequence Viewer

Length: 672 bp
ATGCTTCAGCGTTTACTCAGATTCTTGGTGATAATTTCGCAGCACACGAGTCGCAAACTATCATTCGAAATTAAGCTTCATGGGTTTCTGCTTTGGGCTTCAATGGGGTTCTTGATGCCGGTAGGACTACTGGCCATTAGAATGTCACACAGAGAGCAATGTAGAAGAAGACTCAGAATTCTATTCTACGTTCATGCTTTATCAGAGATACTCTCTCTACTTCTTTCAACAGCAGGAGCTGTAATGTCCTTCAGAAACTTCAACAACTCCTTCAACAATAGGCACCAAAGGATTGGGGTTGGCCTCTATGGTCTGATATGGCTGCAAGCTCTAATTGGCATTGTAAGGCCACAAAGGGGGTCCAAAGGAAGAAGCATGTGGTTTTTGGTGCATTGGATGCTTGGAACCGCAATATCTCTGCTTGGGGTACTCAACATATACACAGGTTTAGTAGCCTACCAAGAGAAGACATCAAAAGGCATAAAGTTTTGGACCATAGTTTTCACAGCTGAAGTATGTTTCATTACCTTCTTCTACCTGTTCCAAGACAAATGGGTTTATATACAAAAGCAAGGAGTGAGTTTGGGTAATGAATCAAAAGGGGCCACCACAGATCAAGTGGTTTTGCCAAGAGACAAGCAAAAGGAAGTTGCCCCGGCAGAGTCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

223

Amino Acids

25.6

Weight (kDa)

10.35

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 26 - 151 3.7e-09 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AciI CCGC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 177
AcuI CTGAAG 2 cut(s) 235, 531
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 4 cut(s) 102, 228, 262, 274
AluBI AGCT 4 cut(s) 76, 239, 329, 509
AluI AGCT 4 cut(s) 76, 239, 329, 509
Alw26I GTCTC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 4 cut(s) 132, 301, 347, 603
ApeKI GCWGC 2 cut(s) 40, 322
ApoI RAATTY 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 360, 492, 603
AsuC2I CCSGG 1 cut(s) 656
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 66
AvaII GGWCC 2 cut(s) 360, 492
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 282
BauI CACGAG 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 175, 473
BbvI GCAGC 2 cut(s) 52, 309
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 1 cut(s) 627
BisI GCNGC 2 cut(s) 41, 323
BlsI GCNGC 2 cut(s) 42, 324
Bme1390I CCNGG 1 cut(s) 656
Bme18I GGWCC 2 cut(s) 360, 492
BmgT120I GGNCC 3 cut(s) 360, 492, 603
BmiI GGNNCC 4 cut(s) 284, 361, 406, 604
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 2 cut(s) 105, 387
BpiI GAAGAC 2 cut(s) 175, 473
BplI GAGNNNNNCTC 2 cut(s) 197, 229
Bpu14I TTCGAA 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 656
BsaJI CCNNGG 1 cut(s) 654
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 2 cut(s) 31, 187
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 2 cut(s) 52, 309
BshFI GGCC 4 cut(s) 134, 303, 349, 605
BshNI GGYRCC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 119, 656
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 627
BsnI GGCC 4 cut(s) 134, 303, 349, 605
Bsp119I TTCGAA 1 cut(s) 66
Bsp143I GATC 1 cut(s) 613
BspACI CCGC 1 cut(s) 408
BspANI GGCC 4 cut(s) 134, 303, 349, 605
BspCNI CTCAG 2 cut(s) 30, 186
BspLI GGNNCC 4 cut(s) 284, 361, 406, 604
BspT104I TTCGAA 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 1 cut(s) 613
BssSI CACGAG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 17, 173
BstF5I GGATG 1 cut(s) 402
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 654
BstV1I GCAGC 2 cut(s) 52, 309
BstV2I GAAGAC 2 cut(s) 175, 473
BstXI CCANNNNNNTGG 1 cut(s) 293
BsuRI GGCC 4 cut(s) 134, 303, 349, 605
BtsCI GGATG 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 327
CaiI CAGNNNCTG 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 3 cut(s) 360, 492, 603
Csp6I GTAC 1 cut(s) 428
CviAII CATG 3 cut(s) 80, 194, 376
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 2 cut(s) 17, 173
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 360, 492
Eco57I CTGAAG 2 cut(s) 235, 531
EcoRI GAATTC 1 cut(s) 177
FaeI CATG 3 cut(s) 83, 197, 379
FatI CATG 3 cut(s) 79, 193, 375
Fnu4HI GCNGC 2 cut(s) 41, 323
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 41, 323
GluI GCNGC 2 cut(s) 41, 323
HaeIII GGCC 4 cut(s) 134, 303, 349, 605
HapII CCGG 2 cut(s) 119, 656
Hin1II CATG 3 cut(s) 83, 197, 379
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 5 cut(s) 21, 49, 171, 593, 662
HpaII CCGG 2 cut(s) 119, 656
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 5 cut(s) 20, 176, 205, 254, 315
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 259, 280, 538
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 325, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 2 cut(s) 17, 173
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 3 cut(s) 83, 197, 379
Kzo9I GATC 1 cut(s) 613
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 116, 132, 219, 429, 551
Lsp1109I GCAGC 2 cut(s) 52, 309
LweI GCATC 2 cut(s) 105, 387
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 5 cut(s) 177, 180, 381, 478, 523
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 33, 69, 177, 333
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 3 cut(s) 58, 165, 671
MnlI CCTC 1 cut(s) 314
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 2 cut(s) 72, 670
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 2 cut(s) 119, 656
MspR9I CCNGG 1 cut(s) 656
MwoI GCNNNNNNNGC 1 cut(s) 397
NciI CCSGG 1 cut(s) 656
NdeII GATC 1 cut(s) 613
NlaIII CATG 3 cut(s) 83, 197, 379
NlaIV GGNNCC 4 cut(s) 284, 361, 406, 604
NmuCI GTSAC 1 cut(s) 144
NspI RCATGY 1 cut(s) 379
NspV TTCGAA 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PfeI GAWTC 2 cut(s) 21, 593
PkrI GCNGC 2 cut(s) 42, 324
PleI GAGTC 3 cut(s) 57, 165, 670
PpsI GAGTC 3 cut(s) 57, 165, 670
PspN4I GGNNCC 4 cut(s) 284, 361, 406, 604
PspPI GGNCC 3 cut(s) 360, 492, 603
PstNI CAGNNNCTG 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 72, 670
SatI GCNGC 2 cut(s) 41, 323
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 3 cut(s) 360, 492, 603
SchI GAGTC 3 cut(s) 58, 165, 671
ScrFI CCNGG 1 cut(s) 656
SetI ASST 8 cut(s) 78, 192, 241, 331, 448, 511, 530, 540
SfaNI GCATC 2 cut(s) 105, 387
SfuI TTCGAA 1 cut(s) 66
SinI GGWCC 2 cut(s) 360, 492
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 4 cut(s) 33, 69, 177, 333
SsiI CCGC 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 654
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 66
TasI AATT 4 cut(s) 33, 69, 177, 333
TfiI GAWTC 2 cut(s) 21, 593
Tru1I TTAA 2 cut(s) 72, 670
Tru9I TTAA 2 cut(s) 72, 670
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 2 cut(s) 40, 322
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 4 cut(s) 68, 182, 511, 606
VpaK11BI GGWCC 2 cut(s) 360, 492
XapI RAATTY 1 cut(s) 177
XceI RCATGY 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.