Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Forward (+)

13277710 .. 13279498

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAACCTCAACATCATCTCAAACAACTCCTCCTCCGTCACCGGAGCCACCGGAGGTGAAGCAACGCAACCACTGTCTTCCTCCTCCTCACCATCGGCGAACTCAAGCCGTTACGAGAACCAGAAGAGGAGAGACTGGAACACGTTCGGACAGTACTTAAGGAACCATCGGCCACCGCTTTCGCTTTCCCGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAAGACAAAAGTCCACACGAACATTTGTCACTTCTATGGCCATCCTAATCCTCCGGCACCGTGTCCGTGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTTATCGGTCGTCTTCGAGCTGCCTTTGAGGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAGGCTTTATCTAAGGGAAGTTAGAGATATGCAGAGTAAAGCTAGAGGTGTTAGCTACGAGAAGAAGAAGCGAAAGCGTCCTCTTCCTTCGTCGTCGACTTCTTCTTCCTCCGCCGTAGCTAGCCACCAGCAATTTCAAATGCTACCGGGTACTAGTTCTACTACTCAATTAAAGTTTGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

219

Amino Acids

24.12

Weight (kDa)

9.93

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	45 - 167	1.3e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	569
AciI	CCGC	2 cut(s)	227, 585
AcoI	YGGCCR	2 cut(s)	221, 331
AcuI	CTGAAG	1 cut(s)	18
AcvI	CACGTG	1 cut(s)	259
AfaI	GTAC	2 cut(s)	206, 625
AfiI	CCNNNNNNNGG	2 cut(s)	22, 280
AflII	CTTAAG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	611
AhlI	ACTAGT	1 cut(s)	626
AluBI	AGCT	8 cut(s)	38, 254, 377, 416, 464, 515, 528, 593
AluI	AGCT	8 cut(s)	38, 254, 377, 416, 464, 515, 528, 593
Alw21I	GWGCWC	3 cut(s)	256, 264, 466
Alw26I	GTCTC	2 cut(s)	177, 440
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	221, 331
ApeKI	GCWGC	1 cut(s)	416
Asp700I	GAANNNNTTC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	3 cut(s)	82, 119, 132
AsuNHI	GCTAGC	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	2 cut(s)	256, 466
BauI	CACGAG	1 cut(s)	465
BbrPI	CACGTG	1 cut(s)	259
BbsI	GAAGAC	2 cut(s)	120, 401
Bbv12I	GWGCWC	3 cut(s)	256, 264, 466
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	4 cut(s)	16, 151, 225, 342
BceAI	ACGGC	3 cut(s)	144, 455, 572
BcnI	CCSGG	1 cut(s)	621
BcoDI	GTCTC	2 cut(s)	177, 440
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	3 cut(s)	516, 594, 627
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	621
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	97, 215, 351
BmrFI	CCNGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	233
BmtI	GCTAGC	1 cut(s)	597
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	120, 401
BpuEI	CTTGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	259
BsaWI	WCCGGW	2 cut(s)	92, 101
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 68, 95, 98, 243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 280
Bse1I	ACTGG	2 cut(s)	191, 286
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	22, 280
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	191, 286
BseRI	GAGGAG	5 cut(s)	70, 73, 124, 127, 193
BseXI	GCAGC	1 cut(s)	403
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	2 cut(s)	223, 333
BshNI	GGYRCC	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	406
BsiHKAI	GWGCWC	3 cut(s)	256, 264, 466
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	4 cut(s)	93, 102, 347, 620
BslI	CCNNNNNNNGG	2 cut(s)	22, 280
BsmAI	GTCTC	2 cut(s)	177, 440
BsmBI	CGTCTC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	223, 333
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	256, 264, 466
BspACI	CCGC	2 cut(s)	227, 585
BspANI	GGCC	2 cut(s)	223, 333
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	97, 215, 351
BspOI	GCTAGC	1 cut(s)	597
BspQI	GCTCTTC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	191, 286
BssSI	CACGAG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	126, 204, 354
Bst6I	CTCTTC	3 cut(s)	37, 170, 561
BstAFI	CTTAAG	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	440, 595
BstDEI	CTNAG	2 cut(s)	444, 485
BstF5I	GGATG	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	177, 440
BstMCI	CGRYCG	1 cut(s)	406
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	2 cut(s)	120, 401
BsuRI	GGCC	2 cut(s)	223, 333
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	122, 253
Cac8I	GCNNGC	2 cut(s)	440, 595
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	2 cut(s)	401, 539
Csp6I	GTAC	2 cut(s)	205, 624
CviQI	GTAC	2 cut(s)	205, 624
DdeI	CTNAG	2 cut(s)	444, 485
EaeI	YGGCCR	2 cut(s)	221, 331
Eam1104I	CTCTTC	3 cut(s)	37, 170, 561
EarI	CTCTTC	3 cut(s)	37, 170, 561
EciI	GGCGGA	1 cut(s)	574
Ecl136II	GAGCTC	2 cut(s)	254, 464
Eco24I	GRGCYC	2 cut(s)	256, 466
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	2 cut(s)	254, 464
Eco57I	CTGAAG	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	2 cut(s)	254, 464
EcoT38I	GRGCYC	2 cut(s)	256, 466
Esp3I	CGTCTC	1 cut(s)	440
FaiI	YATR	3 cut(s)	8, 330, 503
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	2 cut(s)	256, 466
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	3 cut(s)	516, 594, 627
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	223, 333
HapII	CCGG	4 cut(s)	93, 102, 347, 620
HgaI	GACGC	2 cut(s)	401, 539
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	2 cut(s)	10, 451
HpaII	CCGG	4 cut(s)	93, 102, 347, 620
HphI	GGTGA	3 cut(s)	82, 119, 132
Hpy166II	GTNNAC	2 cut(s)	307, 570
Hpy188I	TCNGA	2 cut(s)	200, 371
Hpy188III	TCNNGA	2 cut(s)	240, 389
Hpy8I	GTNNAC	2 cut(s)	307, 570
Hpy99I	CGWCG	2 cut(s)	568, 571
HpyAV	CCTTC	2 cut(s)	20, 570
HpyCH4III	ACNGT	3 cut(s)	126, 204, 354
HpyCH4IV	ACGT	2 cut(s)	194, 258
HpyCH4V	TGCA	2 cut(s)	246, 505
HpyF3I	CTNAG	2 cut(s)	444, 485
HpySE526I	ACGT	2 cut(s)	194, 258
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	3 cut(s)	95, 251, 461
LpnPI	CCDG	9 cut(s)	106, 115, 172, 185, 299, 360, 456, 614, 633
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	3 cut(s)	516, 594, 627
MaeII	ACGT	2 cut(s)	194, 258
MaeIII	GTNAC	5 cut(s)	49, 88, 161, 275, 320
MboII	GAAGA	9 cut(s)	24, 120, 187, 401, 547, 548, 550, 567, 570
MfeI	CAATTG	1 cut(s)	17
MhlI	GDGCHC	3 cut(s)	256, 264, 466
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	3 cut(s)	17, 605, 641
MluNI	TGGCCA	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	394
Mox20I	TGGCCA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	2 cut(s)	209, 644
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	333
MspCI	CTTAAG	1 cut(s)	208
MspI	CCGG	4 cut(s)	93, 102, 347, 620
MspR9I	CCNGG	1 cut(s)	621
MunI	CAATTG	1 cut(s)	17
NciI	CCSGG	1 cut(s)	621
NheI	GCTAGC	1 cut(s)	593
NlaIV	GGNNCC	3 cut(s)	97, 215, 351
NmuCI	GTSAC	3 cut(s)	49, 88, 320
PaeR7I	CTCGAG	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	10, 451
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	418
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	302
Psp124BI	GAGCTC	2 cut(s)	256, 466
PspCI	CACGTG	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	97, 215, 351
PspPI	GGNCC	1 cut(s)	283
PspXI	VCTCGAGB	1 cut(s)	263
RsaI	GTAC	2 cut(s)	206, 625
RsaNI	GTAC	2 cut(s)	205, 624
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	2 cut(s)	256, 466
SalI	GTCGAC	1 cut(s)	568
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	209, 644
SatI	GCNGC	1 cut(s)	417
Sau96I	GGNCC	1 cut(s)	283
ScaI	AGTACT	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	3 cut(s)	256, 264, 466
SfaNI	GCATC	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	283
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	3 cut(s)	154, 208, 263
SmoI	CTYRAG	3 cut(s)	154, 208, 263
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	3 cut(s)	17, 605, 641
SsiI	CCGC	2 cut(s)	227, 585
SspMI	CTAG	3 cut(s)	516, 594, 627
SstI	GAGCTC	2 cut(s)	256, 466
StyD4I	CCNGG	1 cut(s)	619
TaaI	ACNGT	3 cut(s)	126, 204, 354
TaiI	ACGT	2 cut(s)	197, 261
TaqI	TCGA	3 cut(s)	264, 412, 569
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	17, 605, 641
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	10, 451
Tru1I	TTAA	2 cut(s)	209, 644
Tru9I	TTAA	2 cut(s)	209, 644
TscAI	CASTG	2 cut(s)	129, 253
TseFI	GTSAC	3 cut(s)	49, 88, 320
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	3 cut(s)	49, 88, 320
TspGWI	ACGGA	5 cut(s)	57, 76, 263, 348, 447
TspRI	CASTG	2 cut(s)	129, 253
Van91I	CCANNNNNTGG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	3 cut(s)	516, 594, 627
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.