Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Reverse (-)

19021279 .. 19021968

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATTCAATCCAAGATATGGATGGAAGTTCAAGCTCTCACCACCATGAGATCACCATGGCATCGAGCCATAACCTAATTATCAACACGTCCACAACGATGAACAGCAGTGCTCTTACTGCTAGTAGTACTACCACTGGTAATCTGGTAGCGGCTGCTGGAAGCTCATCTTCTCCTTCCTCGTCATCATCTCCTGGTTCCAGCAGCCGCTACGAGAACCAAAAGCGGCGTGACTGGAACACCTTCGGACAGTACCTCAAGAACCACCGCCCTCCGCTCTCTCTCGCCTGGTGCAGTGGGGCTCACGTTCTCGAATTCCTCCGGTACCTTGACCAGTTTGGCAAGACCAAAGTCCACACCCCAATCTGCCCCTTTTACGGCCATCCAAACCCTCCAGCTCCCTGCCCCTGCCCGCTGCGCCAGGCGTGGGGAAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTTCGAAGAAAACGGAGGCAAGCCTGAAGCCAACCCCTTTGGTGCTCGAGCCGTGAGGCTTTACCTTCGTGAGGTTCGTGATTTGCAGTCCAAAGCAAGAGGCATCAGCTACGAGAAGAAGAAGCGGAAGAGACCGCCTCTGCCTCAACAGCTGCCTCCACCGCCTCTGCCGCCGCCAGATCGATCATCACCATTATCCCAGTCAACAATAAGGCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

230

Amino Acids

25.06

Weight (kDa)

9.83

Isoelectric Point (pI)

69.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	59 - 183	1.5e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	277
AccII	CGCG	1 cut(s)	462
AcoI	YGGCCR	2 cut(s)	379, 451
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	3 cut(s)	130, 254, 326
AfiI	CCNNNNNNNGG	4 cut(s)	19, 377, 427, 538
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	9, 33
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	3 cut(s)	193, 287, 420
AluBI	AGCT	6 cut(s)	36, 165, 398, 576, 619, 687
AluI	AGCT	6 cut(s)	36, 165, 398, 576, 619, 687
Alw21I	GWGCWC	2 cut(s)	115, 514
Alw26I	GTCTC	1 cut(s)	592
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	379, 451
ApeKI	GCWGC	4 cut(s)	155, 204, 415, 619
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	324
AspLEI	GCGC	2 cut(s)	420, 464
AsuHPI	GGTGA	3 cut(s)	32, 46, 648
AsuII	TTCGAA	1 cut(s)	471
AvaI	CYCGRG	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	115, 514
BbvI	GCAGC	4 cut(s)	142, 216, 402, 606
BccI	CCATC	2 cut(s)	17, 390
BceAI	ACGGC	2 cut(s)	394, 503
BciT130I	CCWGG	3 cut(s)	195, 289, 422
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	2 cut(s)	123, 688
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	3 cut(s)	195, 289, 422
BmeT110I	CYCGRG	1 cut(s)	513
BmgBI	CACGTC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	199, 326
BmrFI	CCNGG	3 cut(s)	195, 289, 422
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	2 cut(s)	71, 579
BmuI	ACTGGG	1 cut(s)	661
BoxI	GACNNNNGTC	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BpmI	CTGGAG	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	649
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 377, 427, 538
Bse1I	ACTGG	4 cut(s)	142, 239, 334, 667
BseBI	CCWGG	3 cut(s)	195, 289, 422
BseCI	ATCGAT	1 cut(s)	649
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	2 cut(s)	28, 382
BseLI	CCNNNNNNNGG	4 cut(s)	19, 377, 427, 538
BseNI	ACTGG	4 cut(s)	142, 239, 334, 667
BseX3I	CGGCCG	1 cut(s)	451
BseXI	GCAGC	4 cut(s)	142, 216, 402, 606
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	381, 453
BshNI	GGYRCC	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	649
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	115, 514
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	19, 377, 427, 538
BsmAI	GTCTC	1 cut(s)	592
BsnI	GGCC	2 cut(s)	381, 453
Bso31I	GGTCTC	1 cut(s)	592
BsoBI	CYCGRG	1 cut(s)	513
Bsp119I	TTCGAA	1 cut(s)	471
Bsp1286I	GDGCHC	3 cut(s)	115, 304, 514
Bsp143I	GATC	3 cut(s)	51, 646, 650
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	2 cut(s)	381, 453
BspDI	ATCGAT	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	199, 326
BspT104I	TTCGAA	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	324
BspTNI	GGTCTC	1 cut(s)	592
BsrBI	CCGCTC	1 cut(s)	277
BsrI	ACTGG	4 cut(s)	142, 239, 334, 667
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	51, 646, 650
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	3 cut(s)	195, 289, 422
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	590
BstACI	GRCGYC	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	413, 488
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	536
BstF5I	GGATG	2 cut(s)	28, 382
BstFNI	CGCG	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	420, 464
BstKTI	GATC	3 cut(s)	54, 649, 653
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	3 cut(s)	51, 646, 650
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 417, 459, 616, 628, 637
BstNI	CCWGG	3 cut(s)	195, 289, 422
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	3 cut(s)	193, 287, 420
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	4 cut(s)	142, 216, 402, 606
BstZI	CGGCCG	1 cut(s)	451
Bsu15I	ATCGAT	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	381, 453
BsuTUI	ATCGAT	1 cut(s)	649
BtgI	CCRYGG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	28, 382
BtsI	GCAGTG	2 cut(s)	115, 301
BtsIMutI	CAGTG	3 cut(s)	115, 135, 301
Cac8I	GCNNGC	2 cut(s)	413, 488
CfoI	GCGC	2 cut(s)	420, 464
ClaI	ATCGAT	1 cut(s)	649
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	129, 253, 325
CviAII	CATG	2 cut(s)	47, 58
CviQI	GTAC	3 cut(s)	129, 253, 325
DpnI	GATC	3 cut(s)	53, 648, 652
DpnII	GATC	3 cut(s)	51, 646, 650
EaeI	YGGCCR	2 cut(s)	379, 451
EagI	CGGCCG	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
EclXI	CGGCCG	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	592
Eco52I	CGGCCG	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	513
Eco88I	CYCGRG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	536
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	193, 287, 420
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	50, 61
FaiI	YATR	4 cut(s)	20, 48, 59, 72
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FatI	CATG	2 cut(s)	46, 57
FauI	CCCGC	1 cut(s)	420
FokI	GGATG	2 cut(s)	35, 369
FriOI	GRGCYC	1 cut(s)	304
FspBI	CTAG	2 cut(s)	123, 688
GlaI	GCGC	2 cut(s)	419, 463
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	381, 453
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	2 cut(s)	420, 464
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	50, 61
Hin6I	GCGC	2 cut(s)	418, 462
HinP1I	GCGC	2 cut(s)	418, 462
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	3 cut(s)	32, 46, 648
Hpy166II	GTNNAC	3 cut(s)	93, 355, 672
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	4 cut(s)	259, 311, 536, 545
Hpy8I	GTNNAC	3 cut(s)	93, 355, 672
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	4 cut(s)	186, 253, 478, 542
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	2 cut(s)	89, 306
HpyCH4V	TGCA	2 cut(s)	294, 553
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 417, 459, 616, 628, 637
HpySE526I	ACGT	2 cut(s)	89, 306
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	2 cut(s)	50, 61
HspAI	GCGC	2 cut(s)	418, 462
KpnI	GGTACC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	51, 646, 650
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	4 cut(s)	142, 216, 402, 606
LweI	GCATC	2 cut(s)	71, 579
MaeI	CTAG	2 cut(s)	123, 688
MaeII	ACGT	2 cut(s)	89, 306
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	53, 648, 652
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	3 cut(s)	51, 646, 650
MboII	GAAGA	5 cut(s)	162, 485, 595, 598, 607
MhlI	GDGCHC	3 cut(s)	115, 304, 514
MluCI	AATT	2 cut(s)	78, 314
MroXI	GAANNNNTTC	1 cut(s)	242
MslI	CAYNNNNRTG	2 cut(s)	45, 98
MspA1I	CMGCKG	2 cut(s)	415, 619
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	3 cut(s)	195, 289, 422
MvaI	CCWGG	3 cut(s)	195, 289, 422
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	6 cut(s)	119, 417, 459, 616, 628, 637
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	3 cut(s)	51, 646, 650
NlaIII	CATG	2 cut(s)	50, 61
NlaIV	GGNNCC	2 cut(s)	199, 326
NmuCI	GTSAC	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	471
PaeR7I	CTCGAG	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 541
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	350
Psp6I	CCWGG	3 cut(s)	193, 287, 420
PspGI	CCWGG	3 cut(s)	193, 287, 420
PspN4I	GGNNCC	2 cut(s)	199, 326
PspXI	VCTCGAGB	1 cut(s)	513
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	3 cut(s)	130, 254, 326
RsaNI	GTAC	3 cut(s)	129, 253, 325
RseI	CAYNNNNRTG	2 cut(s)	45, 98
Sau3AI	GATC	3 cut(s)	51, 646, 650
ScaI	AGTACT	1 cut(s)	130
ScrFI	CCNGG	3 cut(s)	195, 289, 422
SduI	GDGCHC	3 cut(s)	115, 304, 514
SfaNI	GCATC	2 cut(s)	71, 579
Sfr274I	CTCGAG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	45, 98
SmlI	CTYRAG	2 cut(s)	257, 513
SmoI	CTYRAG	2 cut(s)	257, 513
Sse9I	AATT	2 cut(s)	78, 314
SspMI	CTAG	2 cut(s)	123, 688
StyD4I	CCNGG	3 cut(s)	193, 287, 420
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	2 cut(s)	92, 309
TaqI	TCGA	6 cut(s)	65, 312, 438, 471, 514, 649
TasI	AATT	2 cut(s)	78, 314
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	7 cut(s)	155, 210, 229, 456, 467, 640, 643
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	3 cut(s)	115, 142, 301
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	4 cut(s)	155, 204, 415, 619
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	3 cut(s)	115, 142, 301
Van91I	CCANNNNNTGG	1 cut(s)	19
XagI	CCTNNNNNAGG	1 cut(s)	536
XapI	RAATTY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	2 cut(s)	20, 142
XhoI	CTCGAG	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	2 cut(s)	123, 688
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.