Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Reverse (-)

17732516 .. 17735349

Gene Structure 2834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGATTCGATCCCAGATATGGATGACTCCCCCAACTCTGCAGAGCACAAAATTCAGAACCATAACCTAATCATGACCACGGCTGGCATGATGATGAACAGCGGCGCAGCTAGTTCTGGTGTGACACTAGCAGCCTCGGGTTCTTCTTCTTCTTCATCTTCTCCTGGTTCCAGTAGCCGCTACGAGAACCAAAAGCGCCGTGACTGGAACACCTTCGGACAGTACCTGAAGAACCACCGCCCTCCGCTCTCCCTGTCCCGCTGCAGCGGCGCTCATGTTCTCGAGTTCCTCCGCTACCTCGATCAGTTCGGCAAGACCAAAGTCCACACTCCAATCTGCCCCTTCTATGGCCACCCCAACCCACCAGCCCCATGCCCCTGCCCGCTCCGCCAGGCATGGGGCAGCCTGGATGCCCTCATCGGCCGGCTTCGGGCTGCCTTCGAGGAGAACGGAGGCAAGCCCGAAGCCAATCCTTTCGGAGCTAGAGCCGTTAGGCTCTATCTCCGTGAGGTTCGGGACTTGCAGTCCAAAGCAAGAGGAATCAGCTACGAGAAGAAGAAGCGGAAGCGCCCGCCGCTACCGCCACAGTTGCCTCCACCGCCTCATCAGCATCAGCCTCCTCCCGGTGCCAGCTGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

214

Amino Acids

23.38

Weight (kDa)

9.71

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	49 - 173	1.8e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	626
AccBSI	CCGCTC	2 cut(s)	247, 385
AclWI	GGATC	1 cut(s)	4
AcoI	YGGCCR	2 cut(s)	349, 421
AcsI	RAATTY	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	5 cut(s)	19, 347, 397, 430, 623
AhdI	GACNNNNNGTC	1 cut(s)	523
AjnI	CCWGG	3 cut(s)	163, 390, 405
AluBI	AGCT	4 cut(s)	110, 482, 546, 633
AluI	AGCT	4 cut(s)	110, 482, 546, 633
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	4
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	2 cut(s)	136, 281
AoxI	GGCC	2 cut(s)	349, 421
ApeKI	GCWGC	6 cut(s)	107, 131, 261, 264, 402, 434
ApoI	RAATTY	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	4 cut(s)	107, 198, 272, 570
AsuC2I	CCSGG	1 cut(s)	624
AvaI	CYCGRG	2 cut(s)	136, 281
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	6 cut(s)	119, 143, 248, 276, 414, 421
BceAI	ACGGC	3 cut(s)	96, 183, 473
BciT130I	CCWGG	3 cut(s)	165, 392, 407
BcnI	CCSGG	1 cut(s)	624
BfaI	CTAG	3 cut(s)	111, 128, 483
BfmI	CTRYAG	2 cut(s)	39, 262
BfoI	RGCGCY	3 cut(s)	199, 273, 571
Bme1390I	CCNGG	4 cut(s)	165, 392, 407, 624
BmeRI	GACNNNNNGTC	1 cut(s)	523
BmeT110I	CYCGRG	2 cut(s)	136, 281
BmiI	GGNNCC	2 cut(s)	169, 628
BmrFI	CCNGG	4 cut(s)	165, 392, 407, 624
BmsI	GCATC	2 cut(s)	400, 619
BoxI	GACNNNNGTC	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	78, 135
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 347, 397, 430, 623
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	2 cut(s)	171, 209
BseBI	CCWGG	3 cut(s)	165, 392, 407
BseDI	CCNNGG	2 cut(s)	78, 135
BseGI	GGATG	2 cut(s)	28, 415
BseLI	CCNNNNNNNGG	5 cut(s)	19, 347, 397, 430, 623
BseNI	ACTGG	2 cut(s)	171, 209
BseRI	GAGGAG	2 cut(s)	458, 609
BseX3I	CGGCCG	1 cut(s)	421
BseXI	GCAGC	6 cut(s)	119, 143, 248, 276, 414, 421
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	351, 423
BshNI	GGYRCC	1 cut(s)	626
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	2 cut(s)	136, 281
BsiSI	CCGG	2 cut(s)	424, 624
BslFI	GGGAC	2 cut(s)	241, 530
BslI	CCNNNNNNNGG	5 cut(s)	19, 347, 397, 430, 623
BsmFI	GGGAC	2 cut(s)	241, 530
BsnI	GGCC	2 cut(s)	351, 423
BsoBI	CYCGRG	2 cut(s)	136, 281
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	9, 301
BspANI	GGCC	2 cut(s)	351, 423
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	169, 628
BspMAI	CTGCAG	2 cut(s)	43, 266
BspPI	GGATC	1 cut(s)	4
BspT107I	GGYRCC	1 cut(s)	626
BsrBI	CCGCTC	2 cut(s)	247, 385
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	171, 209
BssAI	RCCGGY	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	78, 135
BssMI	GATC	2 cut(s)	9, 301
Bst2UI	CCWGG	3 cut(s)	165, 392, 407
Bst4CI	ACNGT	2 cut(s)	222, 588
BstC8I	GCNNGC	6 cut(s)	85, 383, 425, 458, 572, 631
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	28, 415
BstH2I	RGCGCY	3 cut(s)	199, 273, 571
BstHHI	GCGC	4 cut(s)	107, 198, 272, 570
BstKTI	GATC	2 cut(s)	12, 304
BstMBI	GATC	2 cut(s)	9, 301
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	7 cut(s)	267, 387, 574, 580, 589, 598, 607
BstNI	CCWGG	3 cut(s)	165, 392, 407
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	4 cut(s)	163, 390, 405, 622
BstSFI	CTRYAG	2 cut(s)	39, 262
BstV1I	GCAGC	6 cut(s)	119, 143, 248, 276, 414, 421
BstZI	CGGCCG	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	351, 423
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	28, 415
Cac8I	GCNNGC	6 cut(s)	85, 383, 425, 458, 572, 631
CaiI	CAGNNNCTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	4 cut(s)	107, 198, 272, 570
Cfr10I	RCCGGY	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	5 cut(s)	73, 88, 275, 372, 396
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	2 cut(s)	11, 303
DpnII	GATC	2 cut(s)	9, 301
DriI	GACNNNNNGTC	1 cut(s)	523
EaeI	YGGCCR	2 cut(s)	349, 421
EagI	CGGCCG	1 cut(s)	421
Eam1105I	GACNNNNNGTC	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	377
EclXI	CGGCCG	1 cut(s)	421
Eco52I	CGGCCG	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	2 cut(s)	136, 281
EcoRII	CCWGG	3 cut(s)	163, 390, 405
FaeI	CATG	5 cut(s)	76, 91, 278, 375, 399
FaiI	YATR	8 cut(s)	20, 63, 74, 89, 276, 348, 373, 397
FaqI	GGGAC	2 cut(s)	241, 530
FatI	CATG	5 cut(s)	72, 87, 274, 371, 395
FauI	CCCGC	3 cut(s)	266, 390, 579
FokI	GGATG	2 cut(s)	35, 422
FspBI	CTAG	3 cut(s)	111, 128, 483
GlaI	GCGC	4 cut(s)	106, 197, 271, 569
HaeII	RGCGCY	3 cut(s)	199, 273, 571
HaeIII	GGCC	2 cut(s)	351, 423
HapII	CCGG	2 cut(s)	424, 624
HhaI	GCGC	4 cut(s)	107, 198, 272, 570
Hin1II	CATG	5 cut(s)	76, 91, 278, 375, 399
Hin6I	GCGC	4 cut(s)	105, 196, 270, 568
HinP1I	GCGC	4 cut(s)	105, 196, 270, 568
HinfI	GANTC	3 cut(s)	5, 26, 540
HpaII	CCGG	2 cut(s)	424, 624
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	57, 218, 479
Hpy188III	TCNNGA	3 cut(s)	73, 281, 515
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	223, 352, 448
HpyCH4III	ACNGT	2 cut(s)	222, 588
HpyCH4V	TGCA	3 cut(s)	41, 264, 523
HpyF10VI	GCNNNNNNNGC	7 cut(s)	267, 387, 574, 580, 589, 598, 607
Hsp92II	CATG	5 cut(s)	76, 91, 278, 375, 399
HspAI	GCGC	4 cut(s)	105, 196, 270, 568
KroI	GCCGGC	1 cut(s)	423
KroNI	GCCGGC	1 cut(s)	425
Kzo9I	GATC	2 cut(s)	9, 301
LmnI	GCTCC	2 cut(s)	390, 479
Lsp1109I	GCAGC	6 cut(s)	119, 143, 248, 276, 414, 421
LweI	GCATC	2 cut(s)	400, 619
MaeI	CTAG	3 cut(s)	111, 128, 483
MaeIII	GTNAC	2 cut(s)	121, 200
MalI	GATC	2 cut(s)	11, 303
MbiI	CCGCTC	2 cut(s)	247, 385
MboI	GATC	2 cut(s)	9, 301
MboII	GAAGA	8 cut(s)	135, 138, 141, 144, 150, 241, 565, 568
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	20
Mox20I	TGGCCA	1 cut(s)	351
MroNI	GCCGGC	1 cut(s)	423
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	4 cut(s)	102, 261, 267, 633
MspI	CCGG	2 cut(s)	424, 624
MspR9I	CCNGG	4 cut(s)	165, 392, 407, 624
MvaI	CCWGG	3 cut(s)	165, 392, 407
MwoI	GCNNNNNNNGC	7 cut(s)	267, 387, 574, 580, 589, 598, 607
NaeI	GCCGGC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	624
NdeII	GATC	2 cut(s)	9, 301
NgoMIV	GCCGGC	1 cut(s)	423
NlaIII	CATG	5 cut(s)	76, 91, 278, 375, 399
NlaIV	GGNNCC	2 cut(s)	169, 628
NmuCI	GTSAC	2 cut(s)	121, 200
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	5, 540
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PshAI	GACNNNNGTC	1 cut(s)	320
Psp6I	CCWGG	3 cut(s)	163, 390, 405
PspGI	CCWGG	3 cut(s)	163, 390, 405
PspN4I	GGNNCC	2 cut(s)	169, 628
PstI	CTGCAG	2 cut(s)	43, 266
PstNI	CAGNNNCTG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	633
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	9, 301
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	4 cut(s)	165, 392, 407, 624
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	9 cut(s)	69, 112, 215, 228, 300, 484, 513, 548, 635
SfaNI	GCATC	2 cut(s)	400, 619
SfcI	CTRYAG	2 cut(s)	39, 262
Sfr274I	CTCGAG	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	3 cut(s)	111, 128, 483
StyD4I	CCNGG	4 cut(s)	163, 390, 405, 622
TaaI	ACNGT	2 cut(s)	222, 588
TaqI	TCGA	4 cut(s)	8, 282, 300, 441
TasI	AATT	1 cut(s)	51
TauI	GCSGC	4 cut(s)	105, 180, 270, 577
TfiI	GAWTC	2 cut(s)	5, 540
TseFI	GTSAC	2 cut(s)	121, 200
TseI	GCWGC	6 cut(s)	107, 131, 261, 264, 402, 434
Tsp45I	GTSAC	2 cut(s)	121, 200
TspDTI	ATGAA	2 cut(s)	110, 144
TspGWI	ACGGA	2 cut(s)	465, 494
XapI	RAATTY	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	3 cut(s)	111, 128, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.