Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Reverse (-)

20133243 .. 20138394

Gene Structure 5152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATTCAATCCAAGACATGGATGGAGGTTCCAACTCTCATCACCATGAGATGAACATGGCATCAAGCAATAACCTAATTATCAACACAAGCTCAATGAACCCTGCTACTACTCTAGCCTCAGCAGCAGGAGTAGCTGGAACCTCATCTTCTTCTTCTTCTTCATCTCCTGCTTCCAGCAGCCGCTACGAGAACCAAAAGCGGCGCGACTGGAACACCTTCGGCCAATACCTCAAGAACCACCGCCCCCCGCTCTCCCTCTCCCGGTGCAGCGGGGCCCACGTCCTCGAATTCCTCCGCTACCTCGATCAGTTCGGCAAGACCAAGGTCCACACCCCCATCTGCCCCTTCTACGGGCACCCGAACCCTCCGGCTCCTTGCCCCTGCCCACTCCGCCAGGCATGGGGCAGCCTCGACGCCCTAATCGGGCGCCTTCGAGCCGCCTTTGAAGAAAACGGAGGCAAGCCCGAAGCCAACCCGTTTGGGGCTCGAGCCGTTCGACTTTACCTTCGCGAGGTTCGTGATTTGCAGTCGAAAGCAAGAGGCATCAGCTACGAGAAGAAGAAGCGGAAGAGGCCACCGTTGCCGCAGCAGCTGCCGCCTCCCCCACTGCCGCCGACAGTTCATCACCATCCAGGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

215

Amino Acids

23.53

Weight (kDa)

9.83

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	357, 429
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	253
AccII	CGCG	2 cut(s)	207, 513
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	290
AcyI	GRCGYC	2 cut(s)	417, 430
AfiI	CCNNNNNNNGG	8 cut(s)	19, 264, 353, 354, 403, 426, 484, 514
AgsI	TTSAA	2 cut(s)	9, 449
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	396, 634
AluBI	AGCT	4 cut(s)	93, 137, 552, 595
AluI	AGCT	4 cut(s)	93, 137, 552, 595
AlwNI	CAGNNNCTG	1 cut(s)	595
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	3 cut(s)	223, 276, 575
ApaI	GGGCCC	1 cut(s)	280
ApeKI	GCWGC	7 cut(s)	125, 180, 270, 408, 589, 592, 595
ApoI	RAATTY	1 cut(s)	290
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	207, 432
AspS9I	GGNCC	3 cut(s)	276, 277, 328
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	35, 620
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	328
BaeGI	GKGCMC	2 cut(s)	280, 360
BanI	GGYRCC	2 cut(s)	357, 429
BanII	GRGCYC	2 cut(s)	280, 490
BbvCI	CCTCAGC	1 cut(s)	121
BbvI	GCAGC	7 cut(s)	137, 192, 282, 420, 582, 601, 604
BccI	CCATC	3 cut(s)	17, 347, 639
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	2 cut(s)	398, 636
BcnI	CCSGG	1 cut(s)	265
BfaI	CTAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	433
Bme1390I	CCNGG	3 cut(s)	265, 398, 636
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	489
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	276, 277, 328
BmiI	GGNNCC	7 cut(s)	31, 142, 277, 278, 359, 375, 431
BmrFI	CCNGG	3 cut(s)	265, 398, 636
BmsI	GCATC	2 cut(s)	71, 555
BoxI	GACNNNNGTC	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	265
BsaHI	GRCGYC	2 cut(s)	417, 430
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	8 cut(s)	19, 264, 353, 354, 403, 426, 484, 514
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	398, 636
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	28, 631
BseLI	CCNNNNNNNGG	8 cut(s)	19, 264, 353, 354, 403, 426, 484, 514
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	215
BseSI	GKGCMC	2 cut(s)	280, 360
BseXI	GCAGC	7 cut(s)	137, 192, 282, 420, 582, 601, 604
BsgI	GTGCAG	1 cut(s)	289
Bsh1236I	CGCG	2 cut(s)	207, 513
BshFI	GGCC	3 cut(s)	225, 278, 577
BshNI	GGYRCC	2 cut(s)	357, 429
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	265, 371
BslI	CCNNNNNNNGG	8 cut(s)	19, 264, 353, 354, 403, 426, 484, 514
BsnI	GGCC	3 cut(s)	225, 278, 577
BsoBI	CYCGRG	1 cut(s)	489
Bsp120I	GGGCCC	1 cut(s)	276
Bsp1286I	GDGCHC	3 cut(s)	280, 360, 490
Bsp143I	GATC	1 cut(s)	307
Bsp68I	TCGCGA	1 cut(s)	513
BspANI	GGCC	3 cut(s)	225, 278, 577
BspCNI	CTCAG	1 cut(s)	134
BspFNI	CGCG	2 cut(s)	207, 513
BspLI	GGNNCC	7 cut(s)	31, 142, 277, 278, 359, 375, 431
BspT107I	GGYRCC	2 cut(s)	357, 429
BsrBI	CCGCTC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	307
BssNI	GRCGYC	2 cut(s)	417, 430
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	398, 636
Bst4CI	ACNGT	2 cut(s)	582, 622
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	2 cut(s)	417, 430
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	1 cut(s)	121
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	2 cut(s)	28, 631
BstFNI	CGCG	2 cut(s)	207, 513
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	2 cut(s)	207, 432
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	8 cut(s)	125, 134, 393, 574, 583, 592, 595, 598
BstNI	CCWGG	2 cut(s)	398, 636
BstPAI	GACNNNNGTC	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	263, 396, 634
BstSLI	GKGCMC	2 cut(s)	280, 360
BstUI	CGCG	2 cut(s)	207, 513
BstV1I	GCAGC	7 cut(s)	137, 192, 282, 420, 582, 601, 604
BsuRI	GGCC	3 cut(s)	225, 278, 577
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	28, 631
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	1 cut(s)	608
BtuMI	TCGCGA	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	464
CaiI	CAGNNNCTG	1 cut(s)	595
CfoI	GCGC	2 cut(s)	207, 432
Cfr13I	GGNCC	3 cut(s)	276, 277, 328
CseI	GACGC	1 cut(s)	425
CviAII	CATG	4 cut(s)	19, 47, 58, 402
DdeI	CTNAG	1 cut(s)	121
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	280, 490
Eco47I	GGWCC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	489
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	396, 634
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	280, 490
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	4 cut(s)	22, 50, 61, 405
FaiI	YATR	4 cut(s)	20, 48, 59, 403
FatI	CATG	4 cut(s)	18, 46, 57, 401
FauI	CCCGC	2 cut(s)	258, 266
FokI	GGATG	2 cut(s)	35, 618
FriOI	GRGCYC	2 cut(s)	280, 490
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	2 cut(s)	206, 431
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	3 cut(s)	225, 278, 577
HapII	CCGG	2 cut(s)	265, 371
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	2 cut(s)	207, 432
Hin1I	GRCGYC	2 cut(s)	417, 430
Hin1II	CATG	4 cut(s)	22, 50, 61, 405
Hin6I	GCGC	2 cut(s)	205, 430
HinP1I	GCGC	2 cut(s)	205, 430
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	265, 371
HphI	GGTGA	2 cut(s)	35, 620
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188III	TCNNGA	3 cut(s)	235, 512, 521
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	4 cut(s)	229, 358, 443, 518
HpyCH4III	ACNGT	2 cut(s)	582, 622
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	270, 529
HpyF10VI	GCNNNNNNNGC	8 cut(s)	125, 134, 393, 574, 583, 592, 595, 598
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	2 cut(s)	417, 430
Hsp92II	CATG	4 cut(s)	22, 50, 61, 405
HspAI	GCGC	2 cut(s)	205, 430
KasI	GGCGCC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	7 cut(s)	137, 192, 282, 420, 582, 601, 604
LweI	GCATC	2 cut(s)	71, 555
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	282
MalI	GATC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	1 cut(s)	307
MboII	GAAGA	9 cut(s)	141, 144, 147, 150, 153, 461, 571, 574, 583
MhlI	GDGCHC	3 cut(s)	280, 360, 490
MluCI	AATT	2 cut(s)	78, 290
Mly113I	GGCGCC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	273, 595
MspI	CCGG	2 cut(s)	265, 371
MspR9I	CCNGG	3 cut(s)	265, 398, 636
MvaI	CCWGG	2 cut(s)	398, 636
MvnI	CGCG	2 cut(s)	207, 513
MwoI	GCNNNNNNNGC	8 cut(s)	125, 134, 393, 574, 583, 592, 595, 598
NarI	GGCGCC	1 cut(s)	430
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	4 cut(s)	22, 50, 61, 405
NlaIV	GGNNCC	7 cut(s)	31, 142, 277, 278, 359, 375, 431
NruI	TCGCGA	1 cut(s)	513
PaeR7I	CTCGAG	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	2 cut(s)	496, 517
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	19
PluTI	GGCGCC	1 cut(s)	433
PshAI	GACNNNNGTC	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	396, 634
PspGI	CCWGG	2 cut(s)	396, 634
PspN4I	GGNNCC	7 cut(s)	31, 142, 277, 278, 359, 375, 431
PspOMI	GGGCCC	1 cut(s)	276
PspPI	GGNCC	3 cut(s)	276, 277, 328
PspXI	VCTCGAGB	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	595
RruI	TCGCGA	1 cut(s)	513
RseI	CAYNNNNRTG	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	3 cut(s)	276, 277, 328
ScrFI	CCNGG	3 cut(s)	265, 398, 636
SduI	GDGCHC	3 cut(s)	280, 360, 490
SfaNI	GCATC	2 cut(s)	71, 555
SfoI	GGCGCC	1 cut(s)	431
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	233, 489
SmoI	CTYRAG	2 cut(s)	233, 489
Sse9I	AATT	2 cut(s)	78, 290
SspDI	GGCGCC	1 cut(s)	429
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	263, 396, 634
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	582, 622
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	7 cut(s)	288, 306, 414, 436, 490, 499, 533
TasI	AATT	2 cut(s)	78, 290
TauI	GCSGC	6 cut(s)	186, 205, 443, 589, 601, 616
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	615
TseI	GCWGC	7 cut(s)	125, 180, 270, 408, 589, 592, 595
TspDTI	ATGAA	4 cut(s)	68, 113, 153, 614
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.