Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Reverse (-)

21275602 .. 21276267

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGATTCAATCCAAGATATGGATGGAAGTTCTAGCTCTCACCATCATGAGATCACCATAGCATCAAGCCATAACCTAATTATCAACACATCCACACTGATGAACAGCACTGCTGCTAGTACTCCTACTACTTCTCTCGCAGCGGCTTCTGGAAGCTCATCTTCTCCTTCCTCATCATCTCCTGGTTCCAGCAGCCGCTATGAGAACCAAAAGCGGCGTGACTGGAACACCTTCGGACAATACCTCAAGAACCATCGCCCTCCGCTCTCTCTTTCTCGGTGCAGCGGGGCCCACGTTCTCGAATTCCTCCGGTACCTTGACCAGTTCGGCAAGACCAAAGTCCACACCCCAATCTGCCCCTTTTACGGCCATCCAAACCCACCAGCTCCCTGCCCCTGCCCGCTTCGCCAGGCATGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGTGCCGCCTTCGAAGAAAACGGAGGCAAGCCTGAAGCCAACCCCTTCGGTGCTCGAGCCGTGAGGCTCTACCTTCGTGAGGTTCGTGATTTGCAGTCCAAAGCAAGAGGCATCAGCTATGAGAAGAAGAAGCGGAAGAGACCGCCGCTGCCTCAACAGTTGCCTCCACCGCCTCTGCCGCCGCCAGGTCATCATCTCCATCATCCCAGTCAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

222

Amino Acids

24.28

Weight (kDa)

9.83

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	56 - 179	3.8e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	265
AcoI	YGGCCR	2 cut(s)	367, 439
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	2 cut(s)	121, 314
AfiI	CCNNNNNNNGG	5 cut(s)	19, 365, 415, 526, 632
AgsI	TTSAA	1 cut(s)	9
AjnI	CCWGG	3 cut(s)	181, 408, 631
AluBI	AGCT	4 cut(s)	36, 156, 386, 564
AluI	AGCT	4 cut(s)	36, 156, 386, 564
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	580
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	3 cut(s)	288, 367, 439
ApaI	GGGCCC	1 cut(s)	292
ApeKI	GCWGC	6 cut(s)	113, 140, 192, 282, 420, 595
ApoI	RAATTY	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	230
Asp718I	GGTACC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	288, 289
AsuHPI	GGTGA	2 cut(s)	32, 46
AsuII	TTCGAA	1 cut(s)	459
AvaI	CYCGRG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	6 cut(s)	100, 152, 204, 294, 432, 582
BccI	CCATC	5 cut(s)	17, 51, 261, 378, 654
BceAI	ACGGC	2 cut(s)	382, 491
BciT130I	CCWGG	3 cut(s)	183, 410, 633
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	2 cut(s)	33, 117
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	3 cut(s)	183, 410, 633
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	288, 289
BmiI	GGNNCC	4 cut(s)	187, 289, 290, 314
BmrFI	CCNGG	3 cut(s)	183, 410, 633
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	2 cut(s)	71, 567
BmuI	ACTGGG	1 cut(s)	648
BoxI	GACNNNNGTC	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	580
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 365, 415, 526, 632
Bse1I	ACTGG	3 cut(s)	227, 322, 654
BseBI	CCWGG	3 cut(s)	183, 410, 633
BseGI	GGATG	4 cut(s)	28, 89, 370, 649
BseLI	CCNNNNNNNGG	5 cut(s)	19, 365, 415, 526, 632
BseNI	ACTGG	3 cut(s)	227, 322, 654
BseSI	GKGCMC	1 cut(s)	292
BseX3I	CGGCCG	1 cut(s)	439
BseXI	GCAGC	6 cut(s)	100, 152, 204, 294, 432, 582
BsgI	GTGCAG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	442
BshFI	GGCC	3 cut(s)	290, 369, 441
BshNI	GGYRCC	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	5 cut(s)	19, 365, 415, 526, 632
BsmAI	GTCTC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	290, 369, 441
Bso31I	GGTCTC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	459
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	292, 502
Bsp143I	GATC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	290, 369, 441
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	4 cut(s)	187, 289, 290, 314
BspT104I	TTCGAA	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	580
BsrBI	CCGCTC	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	227, 322, 654
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	429
Bst2UI	CCWGG	3 cut(s)	183, 410, 633
Bst4CI	ACNGT	1 cut(s)	606
Bst6I	CTCTTC	1 cut(s)	578
BstACI	GRCGYC	1 cut(s)	429
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	401, 476
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	4 cut(s)	28, 89, 370, 649
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	3 cut(s)	405, 616, 625
BstNI	CCWGG	3 cut(s)	183, 410, 633
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	181, 408, 631
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	6 cut(s)	100, 152, 204, 294, 432, 582
BstZI	CGGCCG	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	290, 369, 441
BtgZI	GCGATG	1 cut(s)	239
BtsCI	GGATG	4 cut(s)	28, 89, 370, 649
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	95, 108
Cac8I	GCNNGC	2 cut(s)	401, 476
CciI	TCATGA	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	288, 289
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	120, 313
CviAII	CATG	2 cut(s)	47, 414
CviQI	GTAC	2 cut(s)	120, 313
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EaeI	YGGCCR	2 cut(s)	367, 439
EagI	CGGCCG	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
EclXI	CGGCCG	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	580
Eco52I	CGGCCG	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	501
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	3 cut(s)	181, 408, 631
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	2 cut(s)	50, 417
FaiI	YATR	7 cut(s)	20, 48, 59, 72, 201, 415, 567
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FatI	CATG	2 cut(s)	46, 413
FauI	CCCGC	2 cut(s)	278, 408
FokI	GGATG	4 cut(s)	35, 76, 357, 636
FriOI	GRGCYC	1 cut(s)	292
FspBI	CTAG	2 cut(s)	33, 117
HaeIII	GGCC	3 cut(s)	290, 369, 441
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	437
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	50, 417
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	2 cut(s)	32, 46
Hpy166II	GTNNAC	2 cut(s)	343, 659
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	6 cut(s)	47, 150, 247, 299, 524, 533
Hpy8I	GTNNAC	2 cut(s)	343, 659
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	5 cut(s)	177, 241, 466, 502, 530
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	282, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	405, 616, 625
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	50, 417
KpnI	GGTACC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	6 cut(s)	100, 152, 204, 294, 432, 582
LweI	GCATC	2 cut(s)	71, 567
MaeI	CTAG	2 cut(s)	33, 117
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	53
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	1 cut(s)	51
MboII	GAAGA	5 cut(s)	153, 473, 583, 586, 595
MhlI	GDGCHC	2 cut(s)	292, 502
MluCI	AATT	2 cut(s)	78, 302
MroXI	GAANNNNTTC	1 cut(s)	230
MslI	CAYNNNNRTG	2 cut(s)	45, 98
MspA1I	CMGCKG	3 cut(s)	143, 285, 595
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	3 cut(s)	183, 410, 633
MvaI	CCWGG	3 cut(s)	183, 410, 633
MwoI	GCNNNNNNNGC	3 cut(s)	405, 616, 625
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	50, 417
NlaIV	GGNNCC	4 cut(s)	187, 289, 290, 314
NmuCI	GTSAC	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	459
PaeR7I	CTCGAG	1 cut(s)	501
PagI	TCATGA	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	338
Psp6I	CCWGG	3 cut(s)	181, 408, 631
PspGI	CCWGG	3 cut(s)	181, 408, 631
PspN4I	GGNNCC	4 cut(s)	187, 289, 290, 314
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	288, 289
PspXI	VCTCGAGB	1 cut(s)	501
RsaI	GTAC	2 cut(s)	121, 314
RsaNI	GTAC	2 cut(s)	120, 313
RseI	CAYNNNNRTG	2 cut(s)	45, 98
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	2 cut(s)	288, 289
ScaI	AGTACT	1 cut(s)	121
ScrFI	CCNGG	3 cut(s)	183, 410, 633
SduI	GDGCHC	2 cut(s)	292, 502
SfaNI	GCATC	2 cut(s)	71, 567
Sfr274I	CTCGAG	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	459
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	2 cut(s)	45, 98
SmlI	CTYRAG	2 cut(s)	245, 501
SmoI	CTYRAG	2 cut(s)	245, 501
Sse9I	AATT	2 cut(s)	78, 302
SspMI	CTAG	2 cut(s)	33, 117
StyD4I	CCNGG	3 cut(s)	181, 408, 631
TaaI	ACNGT	1 cut(s)	606
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	4 cut(s)	300, 426, 459, 502
TasI	AATT	2 cut(s)	78, 302
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	8 cut(s)	146, 198, 217, 444, 455, 595, 628, 631
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	2 cut(s)	102, 115
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	6 cut(s)	113, 140, 192, 282, 420, 595
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	2 cut(s)	437, 483
TspRI	CASTG	2 cut(s)	102, 115
Van91I	CCANNNNNTGG	1 cut(s)	19
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	2 cut(s)	33, 117
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.