Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Forward (+)

31109036 .. 31113143

Gene Structure 4108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0193400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4056 bp

ATGAACGTGGATGTTCTCAGTTGGAACTGCAGAGGCATCTGCAATACGACAACAACCAGAGCCTTACGTGATCTGATTGCACAAAACAGGCCTCAGATCGTGTTTTTGTGTGAAACAAAGATAAGTCTATTGTTAGACTTTGAAAAGCTTCATCGAGAGTTAGGGTTTGCTCATTCCAAAGAGGTTTTGAGTGAAGGCCAAGCAGGGGGATTGGGGATGTTCTGGACGGAAGACTTGAATGTCCAGATCCGGACAGTTTCGTCTCATCATATCGACATGGAGGTCAGTGCAGGGCCAGGGGAACCGCGCTGGAGGCTTACTGGGTTTTATGGCTATGCGCGGACTTGTGAACGTGATTTATCTTGGCAACTCCTTAGGGATTTGTGTGATCTGGATTCTCTCCCGTGGGTGATCATCGGGGACTTCAACGAAATCTTGAACAATGGAGAAAAGGTTAGTGGCCCTATTCGTCCGGAGCGTCAGATGAGAGGTTTTAGAGAGGCTTTGGGGTATGGCGAACTGGTTGATCTAGGCTTCCAAGGGAATCAGACAACCTGGTGGAATTCTGAAACACAACTGAGACTGGACAGAGCTGTCGCTACTACTTCTTGGAGTGATATTTTCGGTTTCTCTAGGGTGCGACACTTAGCTCCGAGCGACTCGGACCATATTCCTATCCTGTTACAAGCTAGCATTGTTCCACTTCCGTTGAGACCTAGAAGGCATCGTTTCAAATTTGAATCTTTCTGGTTACAGCATGAAGAGTGTGATCCTCTGGTGATCTCTAAATGGCAGACTACTTTTGAAGGGGTACCCATGTATGCCTTAACGAGGAAGATTATGTGTACTAGGCTTGCTCTGGAGAAGTGGCAGCGTAATACTTTTAAGTGGAGACAGCAGCAGATGTTAGAAGTGAGAGGCAAATTAGAAAGTCTAATGGGGGCAACTGTTTCTGACGCGGTCAATGAAGAGAAGTCCTCACTGATGACTTCTTTGCAAGGTCTTCTAGCACAGGAAGAAGCCTTTTGGAAGCAAAGGGCTAAGATAACTTGGTTGCAGGAAGGGGATCGCAACTCGGGTTTCTTTCATAGGAGGGCGGCCAATAGGAAACGGAAAAACTCCATACTTGGCTTGTTTGATGCTAATGGCGTATGGCAGGAGGATGATAGTGGAGTGGAGGGGGTTGTTACCTCTTATTTCTCCAATATGTTTACTGCGACTCCTCTAGATAGTGAAGCAATTGAACTTACATTGGCAGCCCTTCAACCTTGTGTTACTCCAGAGATGAACCAGAAACTCTGTGAGTTGTATACGGAGGAGGAGGTAAGAATTGCTCTCTTTCAGATGTATCCGACTAAGTCGCCGGGCCCTGATGGGATGCCCCCTCTTTTCTTTCAGCATTATTGGGAATCAATTGGTAAAGATGTTACTATGGCTGTTCAAAGTTTCCTGCACACGGGGTCTATGTTGAAACAGATAAACTTTACCCATATATGCTTAATCCCTAAGGTGCAGCAGCCTGAAACGATGAGTGATCTGCGACCTATTGCCCTCTGCAATGTTATTTACAAACTATGTTCGAAGGTCATAGCCAATAGGTTGAAAGTTTTCTTGCCTGACATTATCTCTCGTTTTCAGAGTGCATTTGTCCCTGGCAGGTTAATCACAGATAACACTTTGGTAGCCAATGAAGTTGCTCACTATGTTCATAATAAGAGAGAGGGCCCCGATGGCTATATGGCTCTCAAGTTGGATCTTAGTAAGGCTTATGACAAAATGGAATGGTCGTTTTTACGCAAAGTTTTGGTCCGTTTTGGTTTTGCTCAAGGTTGGATCGATGTTGTAATGCAGTGTGTGTGTTCGGTCCGATATTCTTTCCTAGTTCGAGGTAAGCCTAGAGGGTATGTTATTCCATCCCGTGGATTGAGACAGGGGGATCCATTATCACCATATTTGTTCCTGCTTGGGGCTGAAGGTTTCTCGGCTTTGCTTCAACAGAAACAGCGACTTGGGCTACTACCTGGTATTGCAATATGTCCAGGTGCCCCTCATGTTAATCACCTACTGTTTGCGGATGATAGTATGCTTTATGCCCAGGCCTCTTCTGCCGCGTGTTTTCAGATAAAAGATGTGATTGAGACTTATGGTAGAGCATCTGGGCAGGTTGTGAATTTTCATAAGAGCTCCGTGGTGTTTAGCAAGAATGTGGGTGTTTCTGACCAAGAAACAGTGGCGAATTTATTAGGAGTGGAGATAGTGGAGTCTCATGAGCGTTATCTGGGTCTGCCAACATATGTGGGTCGGAAGAAAACTGCTACTTTTGAGTATATCAAGGAGCGACTTGCAGAGAAAATGAAGCATTGGCAAGGCAAGCTGCTTAGTGGAGCAGGTAAGGACATTTTGATCAGGGTAGTTGCCCAAGCTCTTCCTAATTATGCTATGAGTGTTTTTCAACTCACGAAGAATTTTTGTGAGGATCTTGAGCAGTTGTGTGCTAGATTTTGGTGGGGTAGCACAACAGATAAAAGAAAAATTCATTGGAAAAAGTGGGACGATCTCTGTCATCCTAAAGAAGTAGGCGGTTTGGGGTTTAGGAGTCTCTCAGAATTTAACATGTCGATGTTAGCCAAGCAAGCTTGGAGGGTGGTTTCTAATCCTACTTCTTTGGTAGCACGATTGTACAAGGCTCGTTATTTCCCTGATAGCACGTTTTGGGAATGCTTCAGTTCATGCTTCTCCTTCCTATTCGTGATTGGTGATGGTCACAAGGTTTCAGTCTGGAATGATGCATGGATTCCTAATCTTCCTACTTTTAGACCACAAGGCATATTATGGCGAGCTGAATGTCCCACTTTAGTGAAGGAGCTTATTACTACTCCAAACTCTTGGAATGAAAATAAGATCTGGACTGTCTTTCTTCCTGAGGATGCTGAGGCTATTCTTTCAATCCCTTTGAGTAGTCGAAACCATGAGGATAGGTTAACATGGCAATTGGAAAAGCAAGGTATGTTCACGGTTAAATCTGCTTATCGTTCTGCCTTTACCAGGACATCTTCACAGTTATCTCCTGCGGTGGTGGCTAATCAACGGGTTTGGAAAAAGATTTGGCATGCCAAAATGCCAAGCTCAGCTAAAGTGACCGCATGGAAGATTTGTCATAACATTTTGCCTACAATGGACCGCCTAGCTGCTAAAAATGTGGTATTGGATTCTCAGGTGTGTGTTTTGTGTAATTCTGAACCAGAAACGATTATCCATTTATGTCGTAATTGTCCTTTCTCTAGGGCGGTGCTTAGAACTAATGATGGCATAAGGAGGTGTTGTTTAGAGGTTACTTCGGATCAAATGGAAGCGTTGGACTGGATACATTTTTGCTCTGAGAAGCTTACAAGTAATGTATTTGCTCAACTTCTATTTTTTCTATGGGGTATCTGGAAAGAAAGAAACGCTCGTGTCTGGGAGAAGAGAGTAGCTTCGGCCATAGATGTTGCAATCCTCTGTTCTACGCGACTGAGTAGTTATGTTTTCCATAATTCCAAACTGCAGAGTGGTACTCATATAAGGAGAGTTCTTCGTTGGCAACCTCCTCCCCCAAGTTGGTTGAAATTGAACTTTGATGGGGCTTTTCATACTGGGAAAGCAGCTGTGGGATTCCTAATCCGTGATTCTGAAGGCAGCTTCATCCAAGCAGCTGGTATGATCGTTACTCATGTGCAATCTGCGGAGCATGTTGAACTATTAGCTTGTAAGGCAGCAGTGGATTTTGTTTTGGAAAACAATATGCAGCCCATTATTTTTGAAACAGATTGTTTGGTCCTGCAGCAGAATCTGTCTCGAAGGGATCGGAACACTTCTTTACTAGGAAGAGTGTATGATGATATTGCTGACGACATGGAACTTATTCCGTGTTCAAGGATCCTTCATGTACGAAGGGAGGCTAACGTTGCAGCACACCTTTTGGCTGCTCATGCTTCTGCTACTGAACAAGATTTCTTGCTTTCTTCTATTCCTCCTTTTCTTCACAATGTAATTGCTGCTGAGCAGCTTGTACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

1351

Amino Acids

153.82

Weight (kDa)

8.55

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	6 - 220	2.6e-16	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	502 - 751	2.3e-27	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	1004 - 1096	2.7e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	1204 - 1324	2.4e-19	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	239, 259, 281, 593
Acc36I	ACCTGC	3 cut(s)	1647, 2152, 2378
Acc65I	GGTACC	1 cut(s)	811
AccB1I	GGYRCC	2 cut(s)	811, 2042
AccB7I	CCANNNNNTGG	1 cut(s)	1919
AccI	GTMKAC	1 cut(s)	1310
AccII	CGCG	5 cut(s)	307, 340, 959, 2111, 3508
AccIII	TCCGGA	2 cut(s)	249, 472
AclI	AACGTT	1 cut(s)	3942
AcoI	YGGCCR	2 cut(s)	1098, 3477
AcsI	RAATTY	7 cut(s)	562, 734, 2170, 2236, 2464, 2532, 2606
AcuI	CTGAAG	3 cut(s)	1992, 2707, 3690
AfaI	GTAC	6 cut(s)	813, 847, 2681, 3553, 3927, 4050
AfiI	CCNNNNNNNGG	7 cut(s)	205, 831, 1456, 1919, 1966, 3045, 3597
AflIII	ACRYGT	1 cut(s)	2613
AjnI	CCWGG	7 cut(s)	295, 554, 1651, 2020, 2038, 2094, 3044
AjuI	GAANNNNNNNTTGG	2 cut(s)	2521, 2553
AleI	CACNNNNGTG	1 cut(s)	2855
Alw21I	GWGCWC	1 cut(s)	2186
Alw26I	GTCTC	9 cut(s)	267, 574, 706, 886, 1921, 2132, 2268, 2603, 3837
AlwNI	CAGNNNCTG	1 cut(s)	3829
Ama87I	CYCGRG	1 cut(s)	1075
Aor13HI	TCCGGA	2 cut(s)	249, 472
AoxI	GGCC	9 cut(s)	89, 196, 293, 460, 1098, 1366, 1723, 2097, 3477
ApaI	GGGCCC	2 cut(s)	1370, 1727
ApoI	RAATTY	7 cut(s)	562, 734, 2170, 2236, 2464, 2532, 2606
ArsI	GACNNNNNNTTYG	2 cut(s)	1791, 1823
Asp700I	GAANNNNTTC	3 cut(s)	147, 1607, 3900
Asp718I	GGTACC	1 cut(s)	811
AspLEI	GCGC	2 cut(s)	309, 340
AsuC2I	CCSGG	1 cut(s)	1365
AsuHPI	GGTGA	5 cut(s)	421, 790, 1938, 2051, 2768
AsuII	TTCGAA	1 cut(s)	1580
AsuNHI	GCTAGC	1 cut(s)	689
AvaI	CYCGRG	1 cut(s)	1075
AvaII	GGWCC	5 cut(s)	664, 1807, 1864, 3178, 3814
AxyI	CCTNAGG	3 cut(s)	374, 1506, 2922
BaeGI	GKGCMC	3 cut(s)	1370, 1727, 2047
BaeI	ACNNNNGTAYC	2 cut(s)	803, 836
BamHI	GGATCC	2 cut(s)	1936, 3915
BanI	GGYRCC	2 cut(s)	811, 2042
BanII	GRGCYC	3 cut(s)	1370, 1727, 2186
BauI	CACGAG	1 cut(s)	3450
BbsI	GAAGAC	2 cut(s)	237, 995
Bbv12I	GWGCWC	1 cut(s)	2186
BbvCI	CCTCAGC	1 cut(s)	2931
BccI	CCATC	6 cut(s)	1367, 1724, 1921, 2753, 3299, 3611
BciT130I	CCWGG	7 cut(s)	297, 556, 1653, 2022, 2040, 2096, 3046
BciVI	GTATCC	2 cut(s)	1359, 3357
BclI	TGATCA	2 cut(s)	411, 2403
BcnI	CCSGG	1 cut(s)	1365
BcoDI	GTCTC	9 cut(s)	267, 574, 706, 886, 1921, 2132, 2268, 2603, 3837
BfmI	CTRYAG	3 cut(s)	28, 3542, 3818
BfuAI	ACCTGC	3 cut(s)	1647, 2152, 2378
BfuI	GTATCC	2 cut(s)	1359, 3357
BglI	GCCNNNNNGGC	1 cut(s)	1731
BglII	AGATCT	1 cut(s)	2901
BlpI	GCTNAGC	2 cut(s)	3127, 4038
Bme1390I	CCNGG	8 cut(s)	297, 556, 1365, 1653, 2022, 2040, 2096, 3046
Bme18I	GGWCC	5 cut(s)	664, 1807, 1864, 3178, 3814
BmeT110I	CYCGRG	1 cut(s)	1075
BmiI	GGNNCC	8 cut(s)	303, 813, 1368, 1725, 1726, 1938, 2044, 3917
BmrFI	CCNGG	8 cut(s)	297, 556, 1365, 1653, 2022, 2040, 2096, 3046
BmrI	ACTGGG	2 cut(s)	330, 3642
BmsI	GCATC	7 cut(s)	45, 733, 1129, 1368, 2162, 2776, 2917
BmtI	GCTAGC	1 cut(s)	693
BmuI	ACTGGG	2 cut(s)	330, 3642
BpiI	GAAGAC	2 cut(s)	237, 995
BplI	GAGNNNNNCTC	4 cut(s)	962, 994, 3538, 3570
BpmI	CTGGAG	3 cut(s)	331, 881, 1263
Bpu10I	CCTNAGC	1 cut(s)	2931
Bpu1102I	GCTNAGC	2 cut(s)	3127, 4038
Bpu14I	TTCGAA	1 cut(s)	1580
BpuEI	CTTGAG	3 cut(s)	1730, 1809, 2501
BpuMI	CCSGG	1 cut(s)	1365
Bsa29I	ATCGAT	1 cut(s)	1836
BsaAI	YACGTR	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	7 cut(s)	296, 404, 538, 1651, 1918, 2094, 2187
BsaWI	WCCGGW	2 cut(s)	249, 472
BsaXI	ACNNNNNCTCC	6 cut(s)	438, 468, 1204, 1234, 3307, 3337
Bsc4I	CCNNNNNNNGG	7 cut(s)	205, 831, 1456, 1919, 1966, 3045, 3597
Bse1I	ACTGG	5 cut(s)	325, 525, 588, 3365, 3637
Bse21I	CCTNAGG	3 cut(s)	374, 1506, 2922
Bse3DI	GCAATG	1 cut(s)	1564
BseAI	TCCGGA	2 cut(s)	249, 472
BseBI	CCWGG	7 cut(s)	297, 556, 1653, 2022, 2040, 2096, 3046
BseCI	ATCGAT	1 cut(s)	1836
BseDI	CCNNGG	7 cut(s)	296, 404, 538, 1651, 1918, 2094, 2187
BseGI	GGATG	9 cut(s)	16, 222, 1168, 1383, 1913, 2080, 2563, 2932, 3681
BseLI	CCNNNNNNNGG	7 cut(s)	205, 831, 1456, 1919, 1966, 3045, 3597
BseMI	GCAATG	1 cut(s)	1564
BseNI	ACTGG	5 cut(s)	325, 525, 588, 3365, 3637
BseRI	GAGGAG	4 cut(s)	1212, 1331, 1334, 3576
BseSI	GKGCMC	3 cut(s)	1370, 1727, 2047
BsgI	GTGCAG	3 cut(s)	309, 1436, 1532
Bsh1236I	CGCG	5 cut(s)	307, 340, 959, 2111, 3508
BshFI	GGCC	9 cut(s)	91, 198, 295, 462, 1100, 1368, 1725, 2099, 3479
BshNI	GGYRCC	2 cut(s)	811, 2042
BshVI	ATCGAT	1 cut(s)	1836
BsiHKAI	GWGCWC	1 cut(s)	2186
BsiHKCI	CYCGRG	1 cut(s)	1075
BsiSI	CCGG	3 cut(s)	250, 473, 1364
BslFI	GGGAC	4 cut(s)	434, 1634, 2564, 2832
BslI	CCNNNNNNNGG	7 cut(s)	205, 831, 1456, 1919, 1966, 3045, 3597
BsmAI	GTCTC	9 cut(s)	267, 574, 706, 886, 1921, 2132, 2268, 2603, 3837
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	4 cut(s)	434, 1634, 2564, 2832
BsmI	GAATGC	1 cut(s)	2723
BsnI	GGCC	9 cut(s)	91, 198, 295, 462, 1100, 1368, 1725, 2099, 3479
Bso31I	GGTCTC	1 cut(s)	706
BsoBI	CYCGRG	1 cut(s)	1075
Bsp119I	TTCGAA	1 cut(s)	1580
Bsp120I	GGGCCC	2 cut(s)	1366, 1723
Bsp1286I	GDGCHC	4 cut(s)	1370, 1727, 2047, 2186
Bsp13I	TCCGGA	2 cut(s)	249, 472
Bsp1407I	TGTACA	2 cut(s)	2679, 4048
Bsp1720I	GCTNAGC	2 cut(s)	3127, 4038
BspANI	GGCC	9 cut(s)	91, 198, 295, 462, 1100, 1368, 1725, 2099, 3479
BspDI	ATCGAT	1 cut(s)	1836
BspEI	TCCGGA	2 cut(s)	249, 472
BspFNI	CGCG	5 cut(s)	307, 340, 959, 2111, 3508
BspHI	TCATGA	1 cut(s)	2266
BspLI	GGNNCC	8 cut(s)	303, 813, 1368, 1725, 1726, 1938, 2044, 3917
BspMAI	CTGCAG	3 cut(s)	32, 3546, 3822
BspMI	ACCTGC	3 cut(s)	1647, 2152, 2378
BspOI	GCTAGC	1 cut(s)	693
BspQI	GCTCTTC	1 cut(s)	2430
BspT104I	TTCGAA	1 cut(s)	1580
BspT107I	GGYRCC	2 cut(s)	811, 2042
BspTNI	GGTCTC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	1564
BsrGI	TGTACA	2 cut(s)	2679, 4048
BsrI	ACTGG	5 cut(s)	325, 525, 588, 3365, 3637
BssECI	CCNNGG	7 cut(s)	296, 404, 538, 1651, 1918, 2094, 2187
BssNAI	GTATAC	1 cut(s)	1311
BssSI	CACGAG	1 cut(s)	3450
BssT1I	CCWWGG	1 cut(s)	538
Bst1107I	GTATAC	1 cut(s)	1311
Bst2BI	CACGAG	1 cut(s)	3450
Bst2UI	CCWGG	7 cut(s)	297, 556, 1653, 2022, 2040, 2096, 3046
Bst4CI	ACNGT	7 cut(s)	256, 949, 2067, 2230, 2911, 3016, 3060
Bst6I	CTCTTC	6 cut(s)	756, 963, 2107, 2430, 3458, 3859
BstAUI	TGTACA	2 cut(s)	2679, 4048
BstBAI	YACGTR	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	1580
BstC8I	GCNNGC	6 cut(s)	691, 855, 2372, 2634, 2838, 3111
BstDSI	CCRYGG	3 cut(s)	404, 1918, 2187
BstENI	CCTNNNNNAGG	2 cut(s)	829, 3043
BstF5I	GGATG	9 cut(s)	16, 222, 1168, 1383, 1913, 2080, 2563, 2932, 3681
BstFNI	CGCG	5 cut(s)	307, 340, 959, 2111, 3508
BstHHI	GCGC	2 cut(s)	309, 340
BstMAI	GTCTC	9 cut(s)	267, 574, 706, 886, 1921, 2132, 2268, 2603, 3837
BstNI	CCWGG	7 cut(s)	297, 556, 1653, 2022, 2040, 2096, 3046
BstNSI	RCATGY	3 cut(s)	2617, 3113, 3731
BstSCI	CCNGG	8 cut(s)	295, 554, 1363, 1651, 2020, 2038, 2094, 3044
BstSFI	CTRYAG	3 cut(s)	28, 3542, 3818
BstSLI	GKGCMC	3 cut(s)	1370, 1727, 2047
BstUI	CGCG	5 cut(s)	307, 340, 959, 2111, 3508
BstV2I	GAAGAC	2 cut(s)	237, 995
BstX2I	RGATCY	6 cut(s)	246, 1753, 1936, 2476, 2901, 3915
BstXI	CCANNNNNNTGG	2 cut(s)	2886, 3692
BstYI	RGATCY	6 cut(s)	246, 1753, 1936, 2476, 2901, 3915
BstZ17I	GTATAC	1 cut(s)	1311
Bsu15I	ATCGAT	1 cut(s)	1836
Bsu36I	CCTNAGG	3 cut(s)	374, 1506, 2922
BsuI	GTATCC	2 cut(s)	1359, 3357
BsuRI	GGCC	9 cut(s)	91, 198, 295, 462, 1100, 1368, 1725, 2099, 3479
BsuTUI	ATCGAT	1 cut(s)	1836
BtgI	CCRYGG	3 cut(s)	404, 1918, 2187
BtsCI	GGATG	9 cut(s)	16, 222, 1168, 1383, 1913, 2080, 2563, 2932, 3681
BtsI	GCAGTG	2 cut(s)	1856, 3762
BtsIMutI	CAGTG	6 cut(s)	292, 980, 1856, 2235, 3762, 4051
BveI	ACCTGC	3 cut(s)	1647, 2152, 2378
Cac8I	GCNNGC	6 cut(s)	691, 855, 2372, 2634, 2838, 3111
CaiI	CAGNNNCTG	1 cut(s)	3829
CciI	TCATGA	1 cut(s)	2266
CfoI	GCGC	2 cut(s)	309, 340
ClaI	ATCGAT	1 cut(s)	1836
CpoI	CGGWCCG	1 cut(s)	1864
CseI	GACGC	2 cut(s)	467, 965
CsiI	ACCWGGT	2 cut(s)	554, 2020
Csp6I	GTAC	6 cut(s)	812, 846, 2680, 3552, 3926, 4049
CspCI	CAANNNNNGTGG	4 cut(s)	690, 725, 2277, 2312
CspI	CGGWCCG	1 cut(s)	1864
CviQI	GTAC	6 cut(s)	812, 846, 2680, 3552, 3926, 4049
DrdI	GACNNNNNNGTC	4 cut(s)	239, 259, 281, 593
DseDI	GACNNNNNNGTC	4 cut(s)	239, 259, 281, 593
EaeI	YGGCCR	2 cut(s)	1098, 3477
Eam1104I	CTCTTC	6 cut(s)	756, 963, 2107, 2430, 3458, 3859
EarI	CTCTTC	6 cut(s)	756, 963, 2107, 2430, 3458, 3859
Ecl136II	GAGCTC	1 cut(s)	2184
Eco130I	CCWWGG	1 cut(s)	538
Eco147I	AGGCCT	2 cut(s)	91, 2099
Eco24I	GRGCYC	3 cut(s)	1370, 1727, 2186
Eco31I	GGTCTC	1 cut(s)	706
Eco47I	GGWCC	5 cut(s)	664, 1807, 1864, 3178, 3814
Eco53kI	GAGCTC	1 cut(s)	2184
Eco57I	CTGAAG	3 cut(s)	1992, 2707, 3690
Eco81I	CCTNAGG	3 cut(s)	374, 1506, 2922
Eco88I	CYCGRG	1 cut(s)	1075
EcoICRI	GAGCTC	1 cut(s)	2184
EcoNI	CCTNNNNNAGG	2 cut(s)	829, 3043
EcoO109I	RGGNCCY	3 cut(s)	1367, 1723, 1724
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	7 cut(s)	295, 554, 1651, 2020, 2038, 2094, 3044
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	2791
EcoT38I	GRGCYC	3 cut(s)	1370, 1727, 2186
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	267
FaqI	GGGAC	4 cut(s)	434, 1634, 2564, 2832
FauNDI	CATATG	1 cut(s)	2293
FbaI	TGATCA	2 cut(s)	411, 2403
FblI	GTMKAC	1 cut(s)	1310
FokI	GGATG	9 cut(s)	23, 229, 1175, 1390, 1900, 2087, 2550, 2939, 3668
FriOI	GRGCYC	3 cut(s)	1370, 1727, 2186
GlaI	GCGC	2 cut(s)	308, 339
GsuI	CTGGAG	3 cut(s)	331, 881, 1263
HaeIII	GGCC	9 cut(s)	91, 198, 295, 462, 1100, 1368, 1725, 2099, 3479
HapII	CCGG	3 cut(s)	250, 473, 1364
HgaI	GACGC	2 cut(s)	467, 965
HhaI	GCGC	2 cut(s)	309, 340
Hin6I	GCGC	2 cut(s)	307, 338
HinP1I	GCGC	2 cut(s)	307, 338
HincII	GTYRAC	1 cut(s)	2982
HindII	GTYRAC	1 cut(s)	2982
HindIII	AAGCTT	3 cut(s)	146, 2634, 3383
HpaI	GTTAAC	1 cut(s)	2982
HpaII	CCGG	3 cut(s)	250, 473, 1364
HphI	GGTGA	5 cut(s)	421, 790, 1938, 2051, 2768
Hpy166II	GTNNAC	7 cut(s)	350, 846, 1212, 1311, 2982, 3012, 4051
Hpy8I	GTNNAC	7 cut(s)	350, 846, 1212, 1311, 2982, 3012, 4051
HpyCH4III	ACNGT	7 cut(s)	256, 949, 2067, 2230, 2911, 3016, 3060
HpyCH4IV	ACGT	5 cut(s)	6, 67, 352, 2708, 3942
HpySE526I	ACGT	5 cut(s)	6, 67, 352, 2708, 3942
HspAI	GCGC	2 cut(s)	307, 338
Kpn2I	TCCGGA	2 cut(s)	249, 472
KpnI	GGTACC	1 cut(s)	815
Ksp22I	TGATCA	2 cut(s)	411, 2403
KspAI	GTTAAC	1 cut(s)	2982
LguI	GCTCTTC	1 cut(s)	2430
LmnI	GCTCC	7 cut(s)	475, 655, 2189, 2335, 2384, 2863, 3724
LweI	GCATC	7 cut(s)	45, 733, 1129, 1368, 2162, 2776, 2917
MabI	ACCWGGT	2 cut(s)	554, 2020
MaeII	ACGT	5 cut(s)	6, 67, 352, 2708, 3942
MaeIII	GTNAC	9 cut(s)	681, 750, 1186, 1273, 1426, 2762, 3136, 3331, 3703
MfeI	CAATTG	3 cut(s)	1239, 1413, 2990
MflI	RGATCY	6 cut(s)	246, 1753, 1936, 2476, 2901, 3915
MhlI	GDGCHC	4 cut(s)	1370, 1727, 2047, 2186
MlyI	GAGTC	4 cut(s)	653, 1213, 2270, 2605
MmeI	TCCRAC	5 cut(s)	1376, 1731, 1811, 2282, 3336
Mph1103I	ATGCAT	1 cut(s)	2791
MroI	TCCGGA	2 cut(s)	249, 472
MroXI	GAANNNNTTC	3 cut(s)	147, 1607, 3900
MseI	TTAA	8 cut(s)	827, 885, 1499, 1661, 2055, 2610, 2981, 3018
MslI	CAYNNNNRTG	2 cut(s)	2618, 2855
MspA1I	CMGCKG	2 cut(s)	3644, 3692
MspI	CCGG	3 cut(s)	250, 473, 1364
MspR9I	CCNGG	8 cut(s)	297, 556, 1365, 1653, 2022, 2040, 2096, 3046
MunI	CAATTG	3 cut(s)	1239, 1413, 2990
Mva1269I	GAATGC	1 cut(s)	2723
MvaI	CCWGG	7 cut(s)	297, 556, 1653, 2022, 2040, 2096, 3046
MvnI	CGCG	5 cut(s)	307, 340, 959, 2111, 3508
NciI	CCSGG	1 cut(s)	1365
NdeI	CATATG	1 cut(s)	2293
NheI	GCTAGC	1 cut(s)	689
NlaIV	GGNNCC	8 cut(s)	303, 813, 1368, 1725, 1726, 1938, 2044, 3917
NmeAIII	GCCGAG	1 cut(s)	1961
NmuCI	GTSAC	2 cut(s)	2762, 3136
NsiI	ATGCAT	1 cut(s)	2791
NspI	RCATGY	3 cut(s)	2617, 3113, 3731
NspV	TTCGAA	1 cut(s)	1580
OliI	CACNNNNGTG	1 cut(s)	2855
PaeI	GCATGC	1 cut(s)	3113
PagI	TCATGA	1 cut(s)	2266
PceI	AGGCCT	2 cut(s)	91, 2099
PciI	ACATGT	1 cut(s)	2613
PciSI	GCTCTTC	1 cut(s)	2430
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PctI	GAATGC	1 cut(s)	2723
PdmI	GAANNNNTTC	3 cut(s)	147, 1607, 3900
PfeI	GAWTC	9 cut(s)	395, 544, 740, 1409, 2794, 3209, 3651, 3665, 3826
PflFI	GACNNNGTC	2 cut(s)	959, 1357
PflMI	CCANNNNNTGG	1 cut(s)	1919
PleI	GAGTC	4 cut(s)	653, 1213, 2269, 2604
PpsI	GAGTC	4 cut(s)	653, 1213, 2269, 2604
Ppu21I	YACGTR	1 cut(s)	68
PscI	ACATGT	1 cut(s)	2613
Psp124BI	GAGCTC	1 cut(s)	2186
Psp1406I	AACGTT	1 cut(s)	3942
Psp6I	CCWGG	7 cut(s)	295, 554, 1651, 2020, 2038, 2094, 3044
PspGI	CCWGG	7 cut(s)	295, 554, 1651, 2020, 2038, 2094, 3044
PspN4I	GGNNCC	8 cut(s)	303, 813, 1368, 1725, 1726, 1938, 2044, 3917
PspOMI	GGGCCC	2 cut(s)	1366, 1723
PstI	CTGCAG	3 cut(s)	32, 3546, 3822
PstNI	CAGNNNCTG	1 cut(s)	3829
PsuI	RGATCY	6 cut(s)	246, 1753, 1936, 2476, 2901, 3915
PsyI	GACNNNGTC	2 cut(s)	959, 1357
PvuII	CAGCTG	2 cut(s)	3644, 3692
RsaI	GTAC	6 cut(s)	813, 847, 2681, 3553, 3927, 4050
RsaNI	GTAC	6 cut(s)	812, 846, 2680, 3552, 3926, 4049
RseI	CAYNNNNRTG	2 cut(s)	2618, 2855
Rsr2I	CGGWCCG	1 cut(s)	1864
RsrII	CGGWCCG	1 cut(s)	1864
SacI	GAGCTC	1 cut(s)	2186
SapI	GCTCTTC	1 cut(s)	2430
SaqAI	TTAA	8 cut(s)	827, 885, 1499, 1661, 2055, 2610, 2981, 3018
SchI	GAGTC	4 cut(s)	653, 1213, 2270, 2605
ScrFI	CCNGG	8 cut(s)	297, 556, 1365, 1653, 2022, 2040, 2096, 3046
SduI	GDGCHC	4 cut(s)	1370, 1727, 2047, 2186
SexAI	ACCWGGT	2 cut(s)	554, 2020
SfaNI	GCATC	7 cut(s)	45, 733, 1129, 1368, 2162, 2776, 2917
SfcI	CTRYAG	3 cut(s)	28, 3542, 3818
SfuI	TTCGAA	1 cut(s)	1580
SinI	GGWCC	5 cut(s)	664, 1807, 1864, 3178, 3814
SmiMI	CAYNNNNRTG	2 cut(s)	2618, 2855
SmlI	CTYRAG	3 cut(s)	1745, 1824, 2480
SmoI	CTYRAG	3 cut(s)	1745, 1824, 2480
SphI	GCATGC	1 cut(s)	3113
SseBI	AGGCCT	2 cut(s)	91, 2099
SstI	GAGCTC	1 cut(s)	2186
StuI	AGGCCT	2 cut(s)	91, 2099
StyD4I	CCNGG	8 cut(s)	295, 554, 1363, 1651, 2020, 2038, 2094, 3044
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	7 cut(s)	256, 949, 2067, 2230, 2911, 3016, 3060
TaiI	ACGT	5 cut(s)	9, 70, 355, 2711, 3945
TaqI	TCGA	8 cut(s)	154, 273, 1580, 1836, 1885, 2618, 2962, 3835
TaqII	GACCGA	1 cut(s)	1852
TatI	WGTACW	3 cut(s)	845, 2679, 4048
TauI	GCSGC	2 cut(s)	1100, 2111
TfiI	GAWTC	9 cut(s)	395, 544, 740, 1409, 2794, 3209, 3651, 3665, 3826
Tru1I	TTAA	8 cut(s)	827, 885, 1499, 1661, 2055, 2610, 2981, 3018
Tru9I	TTAA	8 cut(s)	827, 885, 1499, 1661, 2055, 2610, 2981, 3018
TscAI	CASTG	5 cut(s)	292, 987, 1856, 2235, 3762
TseFI	GTSAC	2 cut(s)	2762, 3136
Tsp45I	GTSAC	2 cut(s)	2762, 3136
TspGWI	ACGGA	8 cut(s)	242, 696, 1126, 1328, 1799, 2176, 3650, 3894
TspRI	CASTG	5 cut(s)	292, 987, 1856, 2235, 3762
Tth111I	GACNNNGTC	2 cut(s)	959, 1357
Van91I	CCANNNNNTGG	1 cut(s)	1919
VpaK11BI	GGWCC	5 cut(s)	664, 1807, 1864, 3178, 3814
XagI	CCTNNNNNAGG	2 cut(s)	829, 3043
XapI	RAATTY	7 cut(s)	562, 734, 2170, 2236, 2464, 2532, 2606
XbaI	TCTAGA	1 cut(s)	1225
XceI	RCATGY	3 cut(s)	2617, 3113, 3731
XmiI	GTMKAC	1 cut(s)	1310
XmnI	GAANNNNTTC	3 cut(s)	147, 1607, 3900
Zsp2I	ATGCAT	1 cut(s)	2791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.