Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003163.1

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Reverse (-)

22495 .. 23130

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003163.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggattcaatcccagatatggatgactcccccaactctacagagcacacaattcagaaccataacctaattatgaccacagctggcatgatgatgaacagcggcgcagctagttctggtgtgacactagcagcttcggcttcttcttcttcatcttctcctggttccagtagccgctacgagaaccaaaagcgccgtgactggaacaccttcgggcagtacctgaagaaccaccgccctccgctctccctctcccgctgcagcggcgctcatgttctcgagttcctccgctacctcgaccagttcggcaagacaaaagtccacactccaatctgccccttctatggccaccccaaccctcccgccccctgcccctgcccgctccgccaggcctggggcagcctggacgctctcatcggccgtcttcgagccgcctttgaggagaacggaggcaagcccgaagccaaccctttcggagctagagccgttaggctctacctccgtgaggttcgggacctgcagtccaaagcaagaggaatcagctacgagaagaagaagcggaagcgcccgccgctgccgcaacagttgcctccaccgactcagcatcagccttctcctggtgccagctgtcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

211

Amino Acids

23.2

Weight (kDa)

9.64

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	620
AccBSI	CCGCTC	2 cut(s)	244, 382
AcoI	YGGCCR	2 cut(s)	346, 418
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	5 cut(s)	19, 344, 394, 505, 617
AgsI	TTSAA	1 cut(s)	9
AhdI	GACNNNNNGTC	1 cut(s)	520
AjnI	CCWGG	5 cut(s)	160, 387, 392, 402, 616
AluBI	AGCT	6 cut(s)	83, 110, 134, 479, 543, 627
AluI	AGCT	6 cut(s)	83, 110, 134, 479, 543, 627
Alw21I	GWGCWC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	346, 390, 418
ApeKI	GCWGC	6 cut(s)	107, 131, 258, 261, 399, 574
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	4 cut(s)	107, 195, 269, 567
AspS9I	GGNCC	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	6 cut(s)	119, 143, 245, 273, 411, 561
BceAI	ACGGC	3 cut(s)	180, 405, 470
BciT130I	CCWGG	5 cut(s)	162, 389, 394, 404, 618
BfaI	CTAG	3 cut(s)	111, 128, 480
BfmI	CTRYAG	3 cut(s)	39, 259, 518
BfoI	RGCGCY	3 cut(s)	196, 270, 568
BfuAI	ACCTGC	1 cut(s)	525
Bme1390I	CCNGG	5 cut(s)	162, 389, 394, 404, 618
Bme18I	GGWCC	1 cut(s)	514
BmeRI	GACNNNNNGTC	1 cut(s)	520
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	3 cut(s)	166, 515, 622
BmrFI	CCNGG	5 cut(s)	162, 389, 394, 404, 618
BmsI	GCATC	1 cut(s)	613
BoxI	GACNNNNGTC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 344, 394, 505, 617
Bse1I	ACTGG	3 cut(s)	168, 206, 301
BseBI	CCWGG	5 cut(s)	162, 389, 394, 404, 618
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	5 cut(s)	19, 344, 394, 505, 617
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	3 cut(s)	168, 206, 301
BseRI	GAGGAG	1 cut(s)	455
BseX3I	CGGCCG	1 cut(s)	418
BseXI	GCAGC	6 cut(s)	119, 143, 245, 273, 411, 561
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	3 cut(s)	348, 392, 420
BshNI	GGYRCC	1 cut(s)	620
BsiEI	CGRYCG	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	5 cut(s)	19, 344, 394, 505, 617
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	3 cut(s)	348, 392, 420
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	348, 392, 420
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	166, 515, 622
BspMAI	CTGCAG	2 cut(s)	263, 522
BspMI	ACCTGC	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	620
BsrBI	CCGCTC	2 cut(s)	244, 382
BsrI	ACTGG	3 cut(s)	168, 206, 301
BssECI	CCNNGG	1 cut(s)	393
Bst2UI	CCWGG	5 cut(s)	162, 389, 394, 404, 618
Bst4CI	ACNGT	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstC8I	GCNNGC	5 cut(s)	85, 380, 455, 569, 625
BstDEI	CTNAG	1 cut(s)	600
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	1 cut(s)	28
BstH2I	RGCGCY	3 cut(s)	196, 270, 568
BstHHI	GCGC	4 cut(s)	107, 195, 269, 567
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 264, 384, 571, 577, 586
BstNI	CCWGG	5 cut(s)	162, 389, 394, 404, 618
BstPAI	GACNNNNGTC	1 cut(s)	317
BstSCI	CCNGG	5 cut(s)	160, 387, 392, 402, 616
BstSFI	CTRYAG	3 cut(s)	39, 259, 518
BstV1I	GCAGC	6 cut(s)	119, 143, 245, 273, 411, 561
BstV2I	GAAGAC	1 cut(s)	416
BstZI	CGGCCG	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	348, 392, 420
BtsCI	GGATG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	5 cut(s)	85, 380, 455, 569, 625
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	4 cut(s)	107, 195, 269, 567
Cfr13I	GGNCC	1 cut(s)	514
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	88, 272
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	600
DriI	GACNNNNNGTC	1 cut(s)	520
EaeI	YGGCCR	2 cut(s)	346, 418
EagI	CGGCCG	1 cut(s)	418
Eam1105I	GACNNNNNGTC	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	374
EclXI	CGGCCG	1 cut(s)	418
Eco147I	AGGCCT	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	514
Eco52I	CGGCCG	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRII	CCWGG	5 cut(s)	160, 387, 392, 402, 616
FaeI	CATG	2 cut(s)	91, 275
FaiI	YATR	6 cut(s)	20, 63, 74, 89, 273, 345
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	2 cut(s)	87, 271
FauI	CCCGC	4 cut(s)	263, 370, 387, 576
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	3 cut(s)	111, 128, 480
GlaI	GCGC	4 cut(s)	106, 194, 268, 566
HaeII	RGCGCY	3 cut(s)	196, 270, 568
HaeIII	GGCC	3 cut(s)	348, 392, 420
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	4 cut(s)	107, 195, 269, 567
Hin1II	CATG	2 cut(s)	91, 275
Hin6I	GCGC	4 cut(s)	105, 193, 267, 565
HinP1I	GCGC	4 cut(s)	105, 193, 267, 565
HinfI	GANTC	4 cut(s)	5, 26, 537, 598
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	57, 476
Hpy188III	TCNNGA	2 cut(s)	278, 512
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	3 cut(s)	220, 349, 621
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4V	TGCA	2 cut(s)	261, 520
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 264, 384, 571, 577, 586
HpyF3I	CTNAG	1 cut(s)	600
Hsp92II	CATG	2 cut(s)	91, 275
HspAI	GCGC	4 cut(s)	105, 193, 267, 565
LmnI	GCTCC	2 cut(s)	387, 476
Lsp1109I	GCAGC	6 cut(s)	119, 143, 245, 273, 411, 561
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	3 cut(s)	111, 128, 480
MaeIII	GTNAC	2 cut(s)	121, 197
MbiI	CCGCTC	2 cut(s)	244, 382
MboII	GAAGA	8 cut(s)	135, 138, 141, 147, 238, 416, 562, 565
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	2 cut(s)	51, 69
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	20, 592
Mox20I	TGGCCA	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	6 cut(s)	83, 102, 258, 264, 574, 627
MspR9I	CCNGG	5 cut(s)	162, 389, 394, 404, 618
MvaI	CCWGG	5 cut(s)	162, 389, 394, 404, 618
MwoI	GCNNNNNNNGC	6 cut(s)	137, 264, 384, 571, 577, 586
NlaIII	CATG	2 cut(s)	91, 275
NlaIV	GGNNCC	3 cut(s)	166, 515, 622
NmuCI	GTSAC	2 cut(s)	121, 197
PaeR7I	CTCGAG	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	5, 537
PleI	GAGTC	2 cut(s)	20, 592
PpsI	GAGTC	2 cut(s)	20, 592
PpuMI	RGGWCCY	1 cut(s)	514
PshAI	GACNNNNGTC	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	5 cut(s)	160, 387, 392, 402, 616
PspGI	CCWGG	5 cut(s)	160, 387, 392, 402, 616
PspN4I	GGNNCC	3 cut(s)	166, 515, 622
PspPI	GGNCC	1 cut(s)	514
PspPPI	RGGWCCY	1 cut(s)	514
PstI	CTGCAG	2 cut(s)	263, 522
PstNI	CAGNNNCTG	1 cut(s)	223
PvuII	CAGCTG	2 cut(s)	83, 627
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	2 cut(s)	20, 592
ScrFI	CCNGG	5 cut(s)	162, 389, 394, 404, 618
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	3 cut(s)	39, 259, 518
Sfr274I	CTCGAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	514
SlaI	CTCGAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	51, 69
SseBI	AGGCCT	1 cut(s)	392
SspMI	CTAG	3 cut(s)	111, 128, 480
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	5 cut(s)	160, 387, 392, 402, 616
TaaI	ACNGT	1 cut(s)	585
TaqI	TCGA	3 cut(s)	279, 297, 427
TasI	AATT	2 cut(s)	51, 69
TauI	GCSGC	6 cut(s)	105, 177, 267, 434, 574, 580
TfiI	GAWTC	2 cut(s)	5, 537
TseFI	GTSAC	2 cut(s)	121, 197
TseI	GCWGC	6 cut(s)	107, 131, 258, 261, 399, 574
Tsp45I	GTSAC	2 cut(s)	121, 197
TspDTI	ATGAA	2 cut(s)	110, 141
TspGWI	ACGGA	2 cut(s)	462, 491
VpaK11BI	GGWCC	1 cut(s)	514
XagI	CCTNNNNNAGG	1 cut(s)	503
XhoI	CTCGAG	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	3 cut(s)	111, 128, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.