Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Reverse (-)

53768610 .. 53772125

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG308700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATTCAATCCCAGATATGGATGACTCCCCCAACTCTACAGAGCACACAATTCAGAACCATAACCTAATTATGACCACAGCTGGCATGATGATGAACAGCGGCGCAGCTAGTTCTGGTGTGACACTAGCAGCTTCGGCTTCTTCTTCTTCTCCTGGTTCCAGTAGCCGCTACGAGAACCAAAAGCGCCGTGACTGGAACACCTTCGGGCAGTACCTGAAGAACCACCGCCCTCCGCTCTCCCTCTCCCGCTGCAGCGGCGCTCATGTTCTCGAGTTCCTCCGCTACCTCGACCAGTTCGGCAAGACAAAAGTCCACACTCCAATCTGCCCCTTCTATGGCCACCCCAACCCGCCCGCCCCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGCAGCCTCGACGCTCTCATCGGCCGTCTTCGAGCCGCCTTTGAGGAGAACGGAGGCAAGCCCGAAGCCAACCCTTTCGGAGCTAGAGCCGTTAGGCTCTACCTCCGTGAGGTTCGGGACCTGCAGTCCAAAGCAAGAGGAATCAGCTACGAGAAGAAGAAGCGGAAGCGCCCGCCGCTGCCGCAACAGTTGCCTCCACCGACTCAGCATCAGCCTTCTCCGGGTGCCAGCTGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

209

Amino Acids

23.02

Weight (kDa)

9.64

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	47 - 170	2.6e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	614
AccBSI	CCGCTC	2 cut(s)	238, 376
AcoI	YGGCCR	2 cut(s)	340, 412
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	5 cut(s)	19, 338, 388, 499, 611
AgsI	TTSAA	1 cut(s)	9
AhdI	GACNNNNNGTC	1 cut(s)	514
AjnI	CCWGG	3 cut(s)	154, 381, 386
AluBI	AGCT	6 cut(s)	83, 110, 134, 473, 537, 621
AluI	AGCT	6 cut(s)	83, 110, 134, 473, 537, 621
Alw21I	GWGCWC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	340, 384, 412
ApeKI	GCWGC	6 cut(s)	107, 131, 252, 255, 393, 568
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	4 cut(s)	107, 189, 263, 561
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	612
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	6 cut(s)	119, 143, 239, 267, 405, 555
BceAI	ACGGC	3 cut(s)	174, 399, 464
BciT130I	CCWGG	3 cut(s)	156, 383, 388
BcnI	CCSGG	1 cut(s)	612
BfaI	CTAG	3 cut(s)	111, 128, 474
BfmI	CTRYAG	3 cut(s)	39, 253, 512
BfoI	RGCGCY	3 cut(s)	190, 264, 562
BfuAI	ACCTGC	1 cut(s)	519
Bme1390I	CCNGG	4 cut(s)	156, 383, 388, 612
Bme18I	GGWCC	1 cut(s)	508
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	3 cut(s)	160, 509, 616
BmrFI	CCNGG	4 cut(s)	156, 383, 388, 612
BmsI	GCATC	1 cut(s)	607
BoxI	GACNNNNGTC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 338, 388, 499, 611
Bse1I	ACTGG	3 cut(s)	162, 200, 295
BseBI	CCWGG	3 cut(s)	156, 383, 388
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	5 cut(s)	19, 338, 388, 499, 611
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	3 cut(s)	162, 200, 295
BseRI	GAGGAG	1 cut(s)	449
BseX3I	CGGCCG	1 cut(s)	412
BseXI	GCAGC	6 cut(s)	119, 143, 239, 267, 405, 555
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	3 cut(s)	342, 386, 414
BshNI	GGYRCC	1 cut(s)	614
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	5 cut(s)	19, 338, 388, 499, 611
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	342, 386, 414
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	342, 386, 414
BspCNI	CTCAG	1 cut(s)	607
BspLI	GGNNCC	3 cut(s)	160, 509, 616
BspMAI	CTGCAG	2 cut(s)	257, 516
BspMI	ACCTGC	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	614
BsrBI	CCGCTC	2 cut(s)	238, 376
BsrI	ACTGG	3 cut(s)	162, 200, 295
BssECI	CCNNGG	1 cut(s)	387
Bst2UI	CCWGG	3 cut(s)	156, 383, 388
Bst4CI	ACNGT	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstC8I	GCNNGC	6 cut(s)	85, 357, 374, 449, 563, 619
BstDEI	CTNAG	1 cut(s)	594
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstF5I	GGATG	1 cut(s)	28
BstH2I	RGCGCY	3 cut(s)	190, 264, 562
BstHHI	GCGC	4 cut(s)	107, 189, 263, 561
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 258, 378, 565, 571, 580
BstNI	CCWGG	3 cut(s)	156, 383, 388
BstPAI	GACNNNNGTC	1 cut(s)	311
BstSCI	CCNGG	4 cut(s)	154, 381, 386, 610
BstSFI	CTRYAG	3 cut(s)	39, 253, 512
BstV1I	GCAGC	6 cut(s)	119, 143, 239, 267, 405, 555
BstV2I	GAAGAC	1 cut(s)	410
BstZI	CGGCCG	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	342, 386, 414
BtsCI	GGATG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	519
Cac8I	GCNNGC	6 cut(s)	85, 357, 374, 449, 563, 619
CaiI	CAGNNNCTG	1 cut(s)	217
CfoI	GCGC	4 cut(s)	107, 189, 263, 561
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	88, 266
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	594
DriI	GACNNNNNGTC	1 cut(s)	514
EaeI	YGGCCR	2 cut(s)	340, 412
EagI	CGGCCG	1 cut(s)	412
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EciI	GGCGGA	1 cut(s)	368
EclXI	CGGCCG	1 cut(s)	412
Eco147I	AGGCCT	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	508
Eco52I	CGGCCG	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	154, 381, 386
FaeI	CATG	2 cut(s)	91, 269
FaiI	YATR	6 cut(s)	20, 63, 74, 89, 267, 339
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	2 cut(s)	87, 265
FauI	CCCGC	5 cut(s)	257, 360, 364, 381, 570
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	3 cut(s)	111, 128, 474
GlaI	GCGC	4 cut(s)	106, 188, 262, 560
HaeII	RGCGCY	3 cut(s)	190, 264, 562
HaeIII	GGCC	3 cut(s)	342, 386, 414
HapII	CCGG	1 cut(s)	611
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	4 cut(s)	107, 189, 263, 561
Hin1II	CATG	2 cut(s)	91, 269
Hin6I	GCGC	4 cut(s)	105, 187, 261, 559
HinP1I	GCGC	4 cut(s)	105, 187, 261, 559
HinfI	GANTC	4 cut(s)	5, 26, 531, 592
HpaII	CCGG	1 cut(s)	611
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	57, 470
Hpy188III	TCNNGA	2 cut(s)	272, 506
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	3 cut(s)	214, 343, 615
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4V	TGCA	2 cut(s)	255, 514
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 258, 378, 565, 571, 580
HpyF3I	CTNAG	1 cut(s)	594
Hsp92II	CATG	2 cut(s)	91, 269
HspAI	GCGC	4 cut(s)	105, 187, 261, 559
LmnI	GCTCC	2 cut(s)	381, 470
Lsp1109I	GCAGC	6 cut(s)	119, 143, 239, 267, 405, 555
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	3 cut(s)	111, 128, 474
MaeIII	GTNAC	2 cut(s)	121, 191
MbiI	CCGCTC	2 cut(s)	238, 376
MboII	GAAGA	7 cut(s)	135, 138, 141, 232, 410, 556, 559
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	2 cut(s)	51, 69
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	2 cut(s)	20, 586
Mox20I	TGGCCA	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	6 cut(s)	83, 102, 252, 258, 568, 621
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	4 cut(s)	156, 383, 388, 612
MvaI	CCWGG	3 cut(s)	156, 383, 388
MwoI	GCNNNNNNNGC	6 cut(s)	137, 258, 378, 565, 571, 580
NciI	CCSGG	1 cut(s)	612
NlaIII	CATG	2 cut(s)	91, 269
NlaIV	GGNNCC	3 cut(s)	160, 509, 616
NmuCI	GTSAC	2 cut(s)	121, 191
PaeR7I	CTCGAG	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	5, 531
PleI	GAGTC	2 cut(s)	20, 586
PpsI	GAGTC	2 cut(s)	20, 586
PpuMI	RGGWCCY	1 cut(s)	508
PshAI	GACNNNNGTC	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	3 cut(s)	154, 381, 386
PspGI	CCWGG	3 cut(s)	154, 381, 386
PspN4I	GGNNCC	3 cut(s)	160, 509, 616
PspPI	GGNCC	1 cut(s)	508
PspPPI	RGGWCCY	1 cut(s)	508
PstI	CTGCAG	2 cut(s)	257, 516
PstNI	CAGNNNCTG	1 cut(s)	217
PvuII	CAGCTG	2 cut(s)	83, 621
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	2 cut(s)	20, 586
ScrFI	CCNGG	4 cut(s)	156, 383, 388, 612
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	3 cut(s)	39, 253, 512
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	51, 69
SseBI	AGGCCT	1 cut(s)	386
SspMI	CTAG	3 cut(s)	111, 128, 474
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	4 cut(s)	154, 381, 386, 610
TaaI	ACNGT	1 cut(s)	579
TaqI	TCGA	4 cut(s)	273, 291, 399, 421
TasI	AATT	2 cut(s)	51, 69
TauI	GCSGC	6 cut(s)	105, 171, 261, 428, 568, 574
TfiI	GAWTC	2 cut(s)	5, 531
TseFI	GTSAC	2 cut(s)	121, 191
TseI	GCWGC	6 cut(s)	107, 131, 252, 255, 393, 568
Tsp45I	GTSAC	2 cut(s)	121, 191
TspDTI	ATGAA	1 cut(s)	110
TspGWI	ACGGA	2 cut(s)	456, 485
VpaK11BI	GGWCC	1 cut(s)	508
XagI	CCTNNNNNAGG	1 cut(s)	497
XhoI	CTCGAG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	3 cut(s)	111, 128, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.