Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011647

Physical Location & Seq

Genomic Coordinates Forward (+)

18978211 .. 18978849

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATTCAATCCCAGATATGGATGACTCCCCCAACTCTGCAGAGCACACAATTCAGAACCATAACCTAATTATGACCACAGCTGGCATGATGATGAACAGCGGCGCAGCTAGTTCTGGTGTGACACTAGCAGCTTCGGCTTCTTCTTCTTCTTCATCTTCTCCTGGTTCCAGTAGCCGCTACGAGAACCAAAAGCGCCGTGACTGGAACACCTTCGGGCAGTACCTGAAGAACCACCGCCCTCCGCTCTCCCTCTCCCGCTGCAGCGGCGCTCATGTTCTCGAGTTCCTTCGCTACCTCGACCAGTTCGGCAAGACAAAAGTCCACACTCCAATCTGCCCCTTCTATGGCCACCCCAACCCGCCCGCCCCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGCAGCCTGGACGCACTCATCGGCCGTCTTCGAGCCGCCTTTGAGGAGAACGGAGGCAAGCCCGAAGCCAACCCTTTCGGAGCTAGAGCCGTTAGGCTCTACCTCCGTGAGGTTCGGGACCTGCAGTCCAAAGCAAGAGGAATCAGCTACGAGAAGAAGAAGCGGAAGCGCCGGCCGCTGCCGCAACAGTTGCCTCCACCGACTCAACATCAGCCTCCTCCGGGTGCCAGCTGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010073 GO:0010074 GO:0010199 GO:0010467 GO:0010492 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019827 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048834 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0090691 GO:0090698 GO:0097659 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

213

Amino Acids

23.32

Weight (kDa)

9.74

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	49 - 173	1.8e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31160
fragaria_vesca	FvH4_2g21310
malus_domestica	MD05G1195700.v1.1 MD10G1183100.v1.1
prunus_persica	Prupe.8G222300_v2.0.a1
pyrus_communis	pycom05g18290 pycom10g15820
rosa_chinensis	RchiOBHm_Chr6g0287901
rosa_laevigata	RLG00000012457
rosa_multiflora	Rmu_sc0003163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00180680 Rroxscaffold_7G00180870
rosa_rugosa	Rorug06G0193400
rosa_samantha	Rh6AG302500 Rh6BG308700 Rh6CG301000 Rh6CG316400 Rh6DG301100
rosa_wichuraiana	Rw6G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	623
AccBSI	CCGCTC	2 cut(s)	247, 385
AcoI	YGGCCR	3 cut(s)	349, 421, 572
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	5 cut(s)	19, 347, 397, 508, 620
AgsI	TTSAA	1 cut(s)	9
AhdI	GACNNNNNGTC	1 cut(s)	523
AjnI	CCWGG	4 cut(s)	163, 390, 395, 405
AluBI	AGCT	6 cut(s)	83, 110, 134, 482, 546, 630
AluI	AGCT	6 cut(s)	83, 110, 134, 482, 546, 630
Alw21I	GWGCWC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	4 cut(s)	349, 393, 421, 572
ApeKI	GCWGC	6 cut(s)	107, 131, 261, 264, 402, 577
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	4 cut(s)	107, 198, 272, 570
AspS9I	GGNCC	1 cut(s)	517
AsuC2I	CCSGG	1 cut(s)	621
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	6 cut(s)	119, 143, 248, 276, 414, 564
BceAI	ACGGC	3 cut(s)	183, 408, 473
BciT130I	CCWGG	4 cut(s)	165, 392, 397, 407
BcnI	CCSGG	1 cut(s)	621
BfaI	CTAG	3 cut(s)	111, 128, 483
BfmI	CTRYAG	3 cut(s)	39, 262, 521
BfoI	RGCGCY	3 cut(s)	199, 273, 571
BfuAI	ACCTGC	1 cut(s)	528
Bme1390I	CCNGG	5 cut(s)	165, 392, 397, 407, 621
Bme18I	GGWCC	1 cut(s)	517
BmeRI	GACNNNNNGTC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	3 cut(s)	169, 518, 625
BmrFI	CCNGG	5 cut(s)	165, 392, 397, 407, 621
BoxI	GACNNNNGTC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 347, 397, 508, 620
Bse118I	RCCGGY	1 cut(s)	570
Bse1I	ACTGG	3 cut(s)	171, 209, 304
BseBI	CCWGG	4 cut(s)	165, 392, 397, 407
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	5 cut(s)	19, 347, 397, 508, 620
BseNI	ACTGG	3 cut(s)	171, 209, 304
BseRI	GAGGAG	2 cut(s)	458, 606
BseX3I	CGGCCG	2 cut(s)	421, 572
BseXI	GCAGC	6 cut(s)	119, 143, 248, 276, 414, 564
Bsh1285I	CGRYCG	2 cut(s)	424, 575
BshFI	GGCC	4 cut(s)	351, 395, 423, 574
BshNI	GGYRCC	1 cut(s)	623
BsiEI	CGRYCG	2 cut(s)	424, 575
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	571, 620
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	5 cut(s)	19, 347, 397, 508, 620
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	4 cut(s)	351, 395, 423, 574
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	48
BspANI	GGCC	4 cut(s)	351, 395, 423, 574
BspLI	GGNNCC	3 cut(s)	169, 518, 625
BspMAI	CTGCAG	3 cut(s)	43, 266, 525
BspMI	ACCTGC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	623
BsrBI	CCGCTC	2 cut(s)	247, 385
BsrFI	RCCGGY	1 cut(s)	570
BsrI	ACTGG	3 cut(s)	171, 209, 304
BssAI	RCCGGY	1 cut(s)	570
BssECI	CCNNGG	1 cut(s)	396
Bst2UI	CCWGG	4 cut(s)	165, 392, 397, 407
Bst4CI	ACNGT	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	589
BstC8I	GCNNGC	6 cut(s)	85, 366, 383, 458, 572, 628
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	28
BstH2I	RGCGCY	3 cut(s)	199, 273, 571
BstHHI	GCGC	4 cut(s)	107, 198, 272, 570
BstMCI	CGRYCG	2 cut(s)	424, 575
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 267, 387, 574, 580, 589
BstNI	CCWGG	4 cut(s)	165, 392, 397, 407
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	5 cut(s)	163, 390, 395, 405, 619
BstSFI	CTRYAG	3 cut(s)	39, 262, 521
BstV1I	GCAGC	6 cut(s)	119, 143, 248, 276, 414, 564
BstV2I	GAAGAC	1 cut(s)	419
BstZI	CGGCCG	2 cut(s)	421, 572
BsuRI	GGCC	4 cut(s)	351, 395, 423, 574
BtsCI	GGATG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	6 cut(s)	85, 366, 383, 458, 572, 628
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	4 cut(s)	107, 198, 272, 570
Cfr10I	RCCGGY	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	517
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	88, 275
CviQI	GTAC	1 cut(s)	223
DriI	GACNNNNNGTC	1 cut(s)	523
EaeI	YGGCCR	3 cut(s)	349, 421, 572
EagI	CGGCCG	2 cut(s)	421, 572
Eam1105I	GACNNNNNGTC	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	377
EclXI	CGGCCG	2 cut(s)	421, 572
Eco147I	AGGCCT	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	517
Eco52I	CGGCCG	2 cut(s)	421, 572
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	4 cut(s)	163, 390, 395, 405
FaeI	CATG	2 cut(s)	91, 278
FaiI	YATR	6 cut(s)	20, 63, 74, 89, 276, 348
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	2 cut(s)	87, 274
FauI	CCCGC	4 cut(s)	266, 369, 373, 390
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	3 cut(s)	111, 128, 483
GlaI	GCGC	4 cut(s)	106, 197, 271, 569
HaeII	RGCGCY	3 cut(s)	199, 273, 571
HaeIII	GGCC	4 cut(s)	351, 395, 423, 574
HapII	CCGG	2 cut(s)	571, 620
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	4 cut(s)	107, 198, 272, 570
Hin1II	CATG	2 cut(s)	91, 278
Hin6I	GCGC	4 cut(s)	105, 196, 270, 568
HinP1I	GCGC	4 cut(s)	105, 196, 270, 568
HinfI	GANTC	4 cut(s)	5, 26, 540, 601
HpaII	CCGG	2 cut(s)	571, 620
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	57, 479
Hpy188III	TCNNGA	2 cut(s)	281, 515
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	223, 299, 352
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4V	TGCA	3 cut(s)	41, 264, 523
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 267, 387, 574, 580, 589
Hsp92II	CATG	2 cut(s)	91, 278
HspAI	GCGC	4 cut(s)	105, 196, 270, 568
KroI	GCCGGC	1 cut(s)	570
KroNI	GCCGGC	1 cut(s)	572
LmnI	GCTCC	2 cut(s)	390, 479
Lsp1109I	GCAGC	6 cut(s)	119, 143, 248, 276, 414, 564
MaeI	CTAG	3 cut(s)	111, 128, 483
MaeIII	GTNAC	2 cut(s)	121, 200
MbiI	CCGCTC	2 cut(s)	247, 385
MboII	GAAGA	9 cut(s)	135, 138, 141, 144, 150, 241, 419, 565, 568
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	2 cut(s)	51, 69
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	20, 595
Mox20I	TGGCCA	1 cut(s)	351
MroNI	GCCGGC	1 cut(s)	570
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	6 cut(s)	83, 102, 261, 267, 577, 630
MspI	CCGG	2 cut(s)	571, 620
MspR9I	CCNGG	5 cut(s)	165, 392, 397, 407, 621
MvaI	CCWGG	4 cut(s)	165, 392, 397, 407
MwoI	GCNNNNNNNGC	6 cut(s)	137, 267, 387, 574, 580, 589
NaeI	GCCGGC	1 cut(s)	572
NciI	CCSGG	1 cut(s)	621
NgoMIV	GCCGGC	1 cut(s)	570
NlaIII	CATG	2 cut(s)	91, 278
NlaIV	GGNNCC	3 cut(s)	169, 518, 625
NmuCI	GTSAC	2 cut(s)	121, 200
PaeR7I	CTCGAG	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	395
PdiI	GCCGGC	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	5, 540
PleI	GAGTC	2 cut(s)	20, 595
PpsI	GAGTC	2 cut(s)	20, 595
PpuMI	RGGWCCY	1 cut(s)	517
PshAI	GACNNNNGTC	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	4 cut(s)	163, 390, 395, 405
PspGI	CCWGG	4 cut(s)	163, 390, 395, 405
PspN4I	GGNNCC	3 cut(s)	169, 518, 625
PspPI	GGNCC	1 cut(s)	517
PspPPI	RGGWCCY	1 cut(s)	517
PstI	CTGCAG	3 cut(s)	43, 266, 525
PstNI	CAGNNNCTG	1 cut(s)	226
PvuII	CAGCTG	2 cut(s)	83, 630
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	2 cut(s)	20, 595
ScrFI	CCNGG	5 cut(s)	165, 392, 397, 407, 621
SduI	GDGCHC	1 cut(s)	48
SfcI	CTRYAG	3 cut(s)	39, 262, 521
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	517
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	51, 69
SseBI	AGGCCT	1 cut(s)	395
SspMI	CTAG	3 cut(s)	111, 128, 483
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	5 cut(s)	163, 390, 395, 405, 619
TaaI	ACNGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	282, 300, 430
TasI	AATT	2 cut(s)	51, 69
TauI	GCSGC	6 cut(s)	105, 180, 270, 437, 577, 583
TfiI	GAWTC	2 cut(s)	5, 540
TseFI	GTSAC	2 cut(s)	121, 200
TseI	GCWGC	6 cut(s)	107, 131, 261, 264, 402, 577
Tsp45I	GTSAC	2 cut(s)	121, 200
TspDTI	ATGAA	2 cut(s)	110, 144
TspGWI	ACGGA	2 cut(s)	465, 494
VpaK11BI	GGWCC	1 cut(s)	517
XagI	CCTNNNNNAGG	1 cut(s)	506
XhoI	CTCGAG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	3 cut(s)	111, 128, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.