Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002342

Physical Location & Seq

Genomic Coordinates Reverse (-)

13583985 .. 13586703

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31955.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAGGAGGTGCTTCTCCAAAATTACTGATTGCCACTTGGGTTTCAAGAATTCCAACTTCTTATTGGTTGGTTCTGAAGTTGGTTCAGGTTCAGTAACGAGAACCATTACTACTACTACTAGTGAGCGTTTATTTAGCAGTAGTTATGCAGCTCATCAAGTTGATCAGATAAAAGACAATCCTGTCTCTGACATGTTGATTGATAAATTTGGTCGCTTACATACCTACTTGAGGATATCTTTGACTGAGCGGTGTAATCTCCGGTGTCAGTATTGTATGCCGTCTGAAGGTGTGGAACTTACTCCTAAGCCTCAGTTGTTGTCACAGTCTGAGATTGTTAGGTTGGCTGGTCTTTTTGTTTCTGCTGGTGTTAACAAGATTCGGTTGACTGGTGGCGAGCCTACGGTTAGGAAAGATATCGAAGAGATTTGTCTGCAGTTGTCTAGTTTAAAAGGGTTGAAGAATTTGGCTATTACTACCAACGGTATCACTCTTGCGAAAAAACTACCAAGGCTTAAGGAATGCGGACTTGATTCGCTGAATATCAGCTTGGATACTCTGGTTCCAGCAAAGTTTGAGTTTCTGACTAGACGTAAAGGGCATGATAGGGTTATGAAATCGATTGATACTGCTATTGAGCTTGGATACAATCCTGTGAAAGTCAATTGTGTTATCATGAGGGGATTGAATGATGATGAGATTTGTGATTTTGTTGAGTTGACACGCGACAAGCCAATCAATGTCCGGTTCATCGAGTTTATGCCATTTGATGGAAATGTTTGGAATGTGAAGAAACTTGTACCTTATGCAGAAGTGATGGATAAAGTGGTCAAGAGGTTTCCGAGCATAAAACGAATGCAAGATCACCCAACTGAAACAGCTAAGAACTTTACGATCGATGGGCATTGCGGTTCTGTTTCTTTCATCACATCCATGACAGAACACTTCTGTGCTGGCTGCAATAGATTGAGACTTCTTGCAGATGGGAACTTCAAAGTTTGCTTGTTTGGTCCTTCAGAGGTTAGTCTGAGAGATCCTCTCCGGTCTGGTGCTGATGATGAGGCGCTAAGGGAAATTATAGGCGCTGCTGTGAAGAGAAAGAAAGCTGCACACGCTGGAATGCTTGACATTGCTAAAACAGCTAATAGACCAATGATACACATTGGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006777 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019538 GO:0019637 GO:0019720 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0051189 GO:0071704 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04122 map00790 map01100 map04122

Pfam Domains

Protein Families

Fer4_12 Mob_synth_C Radical_SAM

Protein Analysis

390

Amino Acids

43.41

Weight (kDa)

9.04

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Radical_SAM	PF04055	79 - 240	3.4e-36	Radical SAM superfamily
Mob_synth_C	PF06463	246 - 341	1e-27	Molybdenum Cofactor Synthesis C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31955 AT2G31955 AT2G31955 AT2G31955 AT2G31955 AT2G31955
fragaria_vesca	FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330
malus_domestica	MD02G1319400.v1.1
prunus_persica	Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1
pyrus_communis	pycom02g26760
rosa_chinensis	RchiOBHm_Chr1g0313251
rosa_laevigata	RLG00000030811
rosa_multiflora	Rmu_sc0005182.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332300
rosa_rugosa	RorugPtG0002000.1 RorugPtG0002100
rosa_samantha	Rh1AG002100 Rh1CG004100 Rh1CG006500 Rh1DG001900 Rh5BG434700
rosa_wichuraiana	Rw1G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccBSI	CCGCTC	1 cut(s)	250
AccII	CGCG	1 cut(s)	726
AciI	CCGC	3 cut(s)	250, 525, 909
AclWI	GGATC	1 cut(s)	1028
AcsI	RAATTY	3 cut(s)	49, 206, 463
AcuI	CTGAAG	3 cut(s)	96, 306, 999
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	3 cut(s)	231, 287, 770
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	4 cut(s)	46, 460, 688, 994
AhlI	ACTAGT	1 cut(s)	119
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AleI	CACNNNNGTG	2 cut(s)	948, 1164
AluBI	AGCT	6 cut(s)	152, 549, 640, 881, 1106, 1142
AluI	AGCT	6 cut(s)	152, 549, 640, 881, 1106, 1142
Alw26I	GTCTC	2 cut(s)	190, 964
AlwI	GGATC	1 cut(s)	1028
ApeKI	GCWGC	4 cut(s)	149, 957, 1085, 1106
ApoI	RAATTY	3 cut(s)	49, 206, 463
AspLEI	GCGC	2 cut(s)	1066, 1085
AspS9I	GGNCC	1 cut(s)	1010
AsuHPI	GGTGA	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	1010
BaeI	ACNNNNGTAYC	2 cut(s)	546, 579
BbvI	GCAGC	4 cut(s)	161, 944, 1072, 1093
BccI	CCATC	4 cut(s)	764, 811, 893, 977
BceAI	ACGGC	1 cut(s)	265
BciVI	GTATCC	2 cut(s)	547, 638
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	190, 964
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	3 cut(s)	120, 444, 588
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	2 cut(s)	1067, 1086
BfrI	CTTAAG	1 cut(s)	515
BfuI	GTATCC	2 cut(s)	547, 638
BisI	GCNGC	4 cut(s)	150, 958, 1086, 1107
BlsI	GCNGC	4 cut(s)	151, 959, 1087, 1108
Bme18I	GGWCC	1 cut(s)	1010
BmgT120I	GGNCC	1 cut(s)	1010
BmiI	GGNNCC	1 cut(s)	564
BplI	GAGNNNNNCTC	4 cut(s)	1021, 1053, 1023, 1055
Bpu10I	CCTNAGC	2 cut(s)	306, 1067
BpuEI	CTTGAG	1 cut(s)	250
Bsa29I	ATCGAT	2 cut(s)	620, 897
BsaJI	CCNNGG	1 cut(s)	509
BsaWI	WCCGGW	3 cut(s)	261, 744, 1041
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 287, 770
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	2 cut(s)	904, 1128
BseCI	ATCGAT	2 cut(s)	620, 897
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	1 cut(s)	929
BseLI	CCNNNNNNNGG	3 cut(s)	231, 287, 770
BseMI	GCAATG	2 cut(s)	904, 1128
BseMII	CTCAG	4 cut(s)	237, 321, 326, 1019
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	4 cut(s)	161, 944, 1072, 1093
BsgI	GTGCAG	1 cut(s)	1092
Bsh1236I	CGCG	1 cut(s)	726
Bsh1285I	CGRYCG	1 cut(s)	897
BshVI	ATCGAT	2 cut(s)	620, 897
BsiEI	CGRYCG	1 cut(s)	897
BsiSI	CCGG	3 cut(s)	262, 745, 1042
BslI	CCNNNNNNNGG	3 cut(s)	231, 287, 770
BsmAI	GTCTC	2 cut(s)	190, 964
BsmI	GAATGC	3 cut(s)	527, 861, 1125
Bsp143I	GATC	4 cut(s)	163, 862, 894, 1033
BspACI	CCGC	3 cut(s)	250, 525, 909
BspCNI	CTCAG	4 cut(s)	238, 322, 325, 1020
BspDI	ATCGAT	2 cut(s)	620, 897
BspFNI	CGCG	1 cut(s)	726
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	1 cut(s)	1028
BspTI	CTTAAG	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	904, 1128
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	509
BssMI	GATC	4 cut(s)	163, 862, 894, 1033
BssT1I	CCWWGG	1 cut(s)	509
Bst4CI	ACNGT	3 cut(s)	327, 406, 485
Bst6I	CTCTTC	2 cut(s)	417, 1088
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	398, 955
BstDEI	CTNAG	7 cut(s)	246, 306, 312, 330, 882, 1028, 1067
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	929
BstFNI	CGCG	1 cut(s)	726
BstH2I	RGCGCY	2 cut(s)	1067, 1086
BstHHI	GCGC	2 cut(s)	1066, 1085
BstKTI	GATC	4 cut(s)	166, 865, 897, 1036
BstMAI	GTCTC	2 cut(s)	190, 964
BstMBI	GATC	4 cut(s)	163, 862, 894, 1033
BstMCI	CGRYCG	1 cut(s)	897
BstMWI	GCNNNNNNNGC	2 cut(s)	1112, 1139
BstNSI	RCATGY	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	434
BstUI	CGCG	1 cut(s)	726
BstV1I	GCAGC	4 cut(s)	161, 944, 1072, 1093
BstX2I	RGATCY	1 cut(s)	1033
BstYI	RGATCY	1 cut(s)	1033
Bsu15I	ATCGAT	2 cut(s)	620, 897
BsuI	GTATCC	2 cut(s)	547, 638
BsuTUI	ATCGAT	2 cut(s)	620, 897
BtsCI	GGATG	1 cut(s)	929
Cac8I	GCNNGC	2 cut(s)	398, 955
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	2 cut(s)	1066, 1085
Cfr13I	GGNCC	1 cut(s)	1010
ClaI	ATCGAT	2 cut(s)	620, 897
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	4 cut(s)	193, 602, 676, 934
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	7 cut(s)	246, 306, 312, 330, 882, 1028, 1067
DpnI	GATC	4 cut(s)	165, 864, 896, 1035
DpnII	GATC	4 cut(s)	163, 862, 894, 1033
DraI	TTTAAA	1 cut(s)	450
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	417, 1088
EarI	CTCTTC	2 cut(s)	417, 1088
Eco130I	CCWWGG	1 cut(s)	509
Eco32I	GATATC	2 cut(s)	237, 418
Eco47I	GGWCC	1 cut(s)	1010
Eco57I	CTGAAG	3 cut(s)	96, 306, 999
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	49
EcoRV	GATATC	2 cut(s)	237, 418
EcoT14I	CCWWGG	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	4 cut(s)	196, 605, 679, 937
FatI	CATG	4 cut(s)	192, 601, 675, 933
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	4 cut(s)	150, 958, 1086, 1107
FokI	GGATG	1 cut(s)	916
Fsp4HI	GCNGC	4 cut(s)	150, 958, 1086, 1107
FspBI	CTAG	3 cut(s)	120, 444, 588
GlaI	GCGC	2 cut(s)	1065, 1084
GluI	GCNGC	4 cut(s)	150, 958, 1086, 1107
HaeII	RGCGCY	2 cut(s)	1067, 1086
HapII	CCGG	3 cut(s)	262, 745, 1042
HhaI	GCGC	2 cut(s)	1066, 1085
Hin1II	CATG	4 cut(s)	196, 605, 679, 937
Hin6I	GCGC	2 cut(s)	1064, 1083
HinP1I	GCGC	2 cut(s)	1064, 1083
HincII	GTYRAC	3 cut(s)	373, 387, 720
HindII	GTYRAC	3 cut(s)	373, 387, 720
HinfI	GANTC	2 cut(s)	379, 533
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	3 cut(s)	262, 745, 1042
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	3 cut(s)	373, 387, 720
Hpy188I	TCNGA	9 cut(s)	76, 168, 190, 286, 331, 585, 843, 1018, 1029
Hpy188III	TCNNGA	3 cut(s)	46, 676, 832
Hpy8I	GTNNAC	3 cut(s)	373, 387, 720
HpyAV	CCTTC	2 cut(s)	281, 1023
HpyCH4III	ACNGT	3 cut(s)	327, 406, 485
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	7 cut(s)	149, 436, 809, 859, 960, 980, 1109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1112, 1139
HpyF3I	CTNAG	7 cut(s)	246, 306, 312, 330, 882, 1028, 1067
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	4 cut(s)	196, 605, 679, 937
HspAI	GCGC	2 cut(s)	1064, 1083
Ksp22I	TGATCA	1 cut(s)	163
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	163, 862, 894, 1033
Lsp1109I	GCAGC	4 cut(s)	161, 944, 1072, 1093
MaeI	CTAG	3 cut(s)	120, 444, 588
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	2 cut(s)	94, 321
MalI	GATC	4 cut(s)	165, 864, 896, 1035
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	4 cut(s)	163, 862, 894, 1033
MboII	GAAGA	4 cut(s)	434, 472, 802, 1105
MfeI	CAATTG	1 cut(s)	664
MflI	RGATCY	1 cut(s)	1033
MluCI	AATT	6 cut(s)	21, 49, 206, 463, 664, 1074
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	225, 321, 672, 828, 1012, 1047, 1054
MseI	TTAA	3 cut(s)	372, 449, 516
MslI	CAYNNNNRTG	3 cut(s)	932, 948, 1164
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	3 cut(s)	262, 745, 1042
MunI	CAATTG	1 cut(s)	664
Mva1269I	GAATGC	3 cut(s)	527, 861, 1125
MvnI	CGCG	1 cut(s)	726
MwoI	GCNNNNNNNGC	2 cut(s)	1112, 1139
NdeII	GATC	4 cut(s)	163, 862, 894, 1033
NlaIII	CATG	4 cut(s)	196, 605, 679, 937
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	321
NspI	RCATGY	1 cut(s)	196
OliI	CACNNNNGTG	2 cut(s)	948, 1164
PagI	TCATGA	1 cut(s)	675
PciI	ACATGT	1 cut(s)	192
PctI	GAATGC	3 cut(s)	527, 861, 1125
PfeI	GAWTC	2 cut(s)	379, 533
PflMI	CCANNNNNTGG	1 cut(s)	770
PkrI	GCNGC	4 cut(s)	151, 959, 1087, 1108
Ple19I	CGATCG	1 cut(s)	897
PscI	ACATGT	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	1010
PsrI	GAACNNNNNNTAC	2 cut(s)	94, 126
PstI	CTGCAG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	1033
PvuI	CGATCG	1 cut(s)	897
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
RseI	CAYNNNNRTG	3 cut(s)	932, 948, 1164
SaqAI	TTAA	3 cut(s)	372, 449, 516
SatI	GCNGC	4 cut(s)	150, 958, 1086, 1107
Sau3AI	GATC	4 cut(s)	163, 862, 894, 1033
Sau96I	GGNCC	1 cut(s)	1010
SfcI	CTRYAG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	1010
SmiMI	CAYNNNNRTG	3 cut(s)	932, 948, 1164
SmlI	CTYRAG	2 cut(s)	229, 515
SmoI	CTYRAG	2 cut(s)	229, 515
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	6 cut(s)	21, 49, 206, 463, 664, 1074
SsiI	CCGC	3 cut(s)	250, 525, 909
SspMI	CTAG	3 cut(s)	120, 444, 588
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	3 cut(s)	327, 406, 485
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	4 cut(s)	420, 620, 753, 897
TasI	AATT	6 cut(s)	21, 49, 206, 463, 664, 1074
TfiI	GAWTC	2 cut(s)	379, 533
Tru1I	TTAA	3 cut(s)	372, 449, 516
Tru9I	TTAA	3 cut(s)	372, 449, 516
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	4 cut(s)	149, 957, 1085, 1106
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	3 cut(s)	629, 739, 913
Van91I	CCANNNNNTGG	1 cut(s)	770
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	1010
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	3 cut(s)	49, 206, 463
XceI	RCATGY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	3 cut(s)	120, 444, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.