Rmu_sc0005182.1_g000003

Cyclic pyranopterin monophosphate synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005182.1
Physical Location & Seq
Reverse (-)
6882 .. 10882
4001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005182.1_g000003.1.cds

Sequence Viewer

Length: 1386 bp
atgatagtgaaccatccaccggcggcgggtggaatagtcttcgctgaaatatggaaggaaggactaaaacacacgaggaggaggaggcgggtaaggttaaggttaaggtcccaatttctgctctgctttggtttcaccacccaccatatcaagataaaagataactcttcttctcttctgctttcatttgtgaaaatgatgaagcgccaactatcaaagcttccccacttacgtacaggctttggaaatttcaattctttcctgtgctcatgctttgaaactgggtccaccagtggtgacgccaagggcttacttcatcagcaaatgcgaatgaatggctccccttacgcaacttgctgtgccaagttgccggaggagcttccaaaagataatcctgtttcgaatatgttgattgattcttttggaaggcagcacacttacttgaggatctctttaacagagcgttgcaatctgcgatgtcaatactgcatgccggccgagggtgtcagcctcactcctggccctcaaattctctcgcagaatgagcttgttcgcttggctaatctgtttgtaagctccggagtcgataaaattcgtttgactggaggggagccaactgtcaggaaagatattgaagacatatgcttgcacttgtctaacttgaagggactgaaaacactggctatcactactaatggaatcactcttgcacgaaaacttcccaagttgaaagaatgcggccttagtgcggtgaatattagtttagacaccttggtccctgcaaagtttgaatttctgaccaggcgtagagggcatgaaagggttatggactcaattaatgctgccatagacctcggttataatcctgttaaggtaaattgcgttgtaatgcgtgggttcaatgatgatgagatttgcaatttcgtagagctgacacgtgaaaagccaattaacattcgattcattgagttcatgccttttgatggaaatgtatggaatgttaagaaacttgtaccctatgcagaaatgttggatagagtggcaaaacattttacaggcctaaaaagacttcaggatcacccaactgatactgccaagaacttcaggatagatgatcatcttggtacagtttcttttatcacatcaatgactgagcatttttgtgctggttgcaatagattgcgactcttagctgatgggaacttcaaagtttgcttgtttggtccttcagaggtcagcttaagagatccccttcggcagggtgctgatgatcatgaactaagggaaataattggttcagcggtgaagaggaagaaggcttcgcatgctggaatgtttgacattgcaaagacagcaaataggcccatgatacatattggtggctaa

Protein Analysis

461

Amino Acids

51.84

Weight (kDa)

9.5

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 861
AasI GACNNNNNNGTC 1 cut(s) 773
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 6 cut(s) 23, 26, 88, 738, 749, 1301
AclWI GGATC 3 cut(s) 455, 1083, 1241
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 4 cut(s) 247, 528, 591, 791
AcuI CTGAAG 3 cut(s) 1055, 1087, 1212
AcvI CACGTG 1 cut(s) 938
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 3 cut(s) 235, 1014, 1126
AfiI CCNNNNNNNGG 6 cut(s) 19, 26, 500, 748, 983, 1258
AflII CTTAAG 1 cut(s) 1240
AflIII ACRYGT 1 cut(s) 935
AgsI TTSAA 8 cut(s) 253, 278, 635, 664, 730, 791, 901, 1207
AjnI CCWGG 2 cut(s) 517, 800
AluBI AGCT 7 cut(s) 220, 379, 547, 576, 931, 1193, 1239
AluI AGCT 7 cut(s) 220, 379, 547, 576, 931, 1193, 1239
Alw21I GWGCWC 1 cut(s) 269
AlwI GGATC 3 cut(s) 455, 1083, 1241
Aor13HI TCCGGA 1 cut(s) 578
AoxI GGCC 5 cut(s) 495, 520, 739, 1057, 1361
ApeKI GCWGC 2 cut(s) 430, 842
ApoI RAATTY 4 cut(s) 247, 528, 591, 791
AseI ATTAAT 1 cut(s) 837
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 6 cut(s) 108, 285, 521, 775, 1223, 1362
AsuHPI GGTGA 5 cut(s) 127, 308, 763, 1070, 1315
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 4 cut(s) 108, 285, 775, 1223
BauI CACGAG 1 cut(s) 73
BbrPI CACGTG 1 cut(s) 938
BbsI GAAGAC 2 cut(s) 31, 642
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 2 cut(s) 442, 829
BccI CCATC 3 cut(s) 21, 977, 1190
BciT130I CCWGG 2 cut(s) 519, 802
BclI TGATCA 2 cut(s) 1114, 1270
BfoI RGCGCY 1 cut(s) 208
BfrI CTTAAG 1 cut(s) 1240
BisI GCNGC 4 cut(s) 24, 431, 739, 843
BlsI GCNGC 4 cut(s) 25, 432, 740, 844
Bme1390I CCNGG 2 cut(s) 519, 802
Bme18I GGWCC 4 cut(s) 108, 285, 775, 1223
BmgT120I GGNCC 6 cut(s) 108, 285, 521, 775, 1223, 1362
BmiI GGNNCC 5 cut(s) 110, 286, 340, 612, 777
BmrFI CCNGG 2 cut(s) 519, 802
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 31, 642
BpmI CTGGAG 1 cut(s) 624
Bpu14I TTCGAA 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 463
BsaAI YACGTR 2 cut(s) 233, 938
BsaBI GATNNNNATC 1 cut(s) 1116
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 4 cut(s) 303, 498, 771, 853
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 26, 500, 748, 983, 1258
Bse118I RCCGGY 2 cut(s) 19, 493
Bse1I ACTGG 4 cut(s) 286, 291, 607, 684
Bse3DI GCAATG 1 cut(s) 1341
Bse8I GATNNNNATC 1 cut(s) 1116
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 519, 802
BseDI CCNNGG 4 cut(s) 303, 498, 771, 853
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 1116
BseLI CCNNNNNNNGG 6 cut(s) 19, 26, 500, 748, 983, 1258
BseMI GCAATG 1 cut(s) 1341
BseMII CTCAG 1 cut(s) 1143
BseNI ACTGG 4 cut(s) 286, 291, 607, 684
BseRI GAGGAG 4 cut(s) 91, 94, 97, 389
BseX3I CGGCCG 1 cut(s) 495
BseXI GCAGC 2 cut(s) 442, 829
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 5 cut(s) 497, 522, 741, 1059, 1363
BsiEI CGRYCG 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 4 cut(s) 20, 371, 494, 579
BslFI GGGAC 3 cut(s) 94, 681, 761
BslI CCNNNNNNNGG 6 cut(s) 19, 26, 500, 748, 983, 1258
BsmFI GGGAC 3 cut(s) 94, 681, 761
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 5 cut(s) 497, 522, 741, 1059, 1363
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 269
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 5 cut(s) 447, 1075, 1114, 1246, 1270
BspACI CCGC 6 cut(s) 23, 26, 88, 738, 749, 1301
BspANI GGCC 5 cut(s) 497, 522, 741, 1059, 1363
BspCNI CTCAG 1 cut(s) 1144
BspEI TCCGGA 1 cut(s) 578
BspHI TCATGA 1 cut(s) 1273
BspLI GGNNCC 5 cut(s) 110, 286, 340, 612, 777
BspPI GGATC 3 cut(s) 455, 1083, 1241
BspT104I TTCGAA 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 1240
BsrDI GCAATG 1 cut(s) 1341
BsrFI RCCGGY 2 cut(s) 19, 493
BsrI ACTGG 4 cut(s) 286, 291, 607, 684
BssAI RCCGGY 2 cut(s) 19, 493
BssECI CCNNGG 4 cut(s) 303, 498, 771, 853
BssMI GATC 5 cut(s) 447, 1075, 1114, 1246, 1270
BssNI GRCGYC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 73
BssT1I CCWWGG 2 cut(s) 303, 771
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 519, 802
Bst4CI ACNGT 2 cut(s) 619, 1129
Bst6I CTCTTC 3 cut(s) 172, 180, 1301
BstACI GRCGYC 1 cut(s) 300
BstAFI CTTAAG 1 cut(s) 1240
BstBAI YACGTR 2 cut(s) 233, 938
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 4 cut(s) 491, 495, 647, 1326
BstDEI CTNAG 4 cut(s) 743, 1152, 1189, 1280
BstENI CCTNNNNNAGG 1 cut(s) 1256
BstF5I GGATG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 5 cut(s) 450, 1078, 1117, 1249, 1273
BstMBI GATC 5 cut(s) 447, 1075, 1114, 1246, 1270
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 5 cut(s) 376, 544, 811, 1325, 1352
BstNI CCWGG 2 cut(s) 519, 802
BstNSI RCATGY 2 cut(s) 493, 1328
BstSCI CCNGG 2 cut(s) 517, 800
BstSNI TACGTA 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 442, 829
BstV2I GAAGAC 2 cut(s) 31, 642
BstX2I RGATCY 2 cut(s) 447, 1246
BstYI RGATCY 2 cut(s) 447, 1246
BstZI CGGCCG 1 cut(s) 495
BsuRI GGCC 5 cut(s) 497, 522, 741, 1059, 1363
BtgZI GCGATG 1 cut(s) 490
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 298, 677
Cac8I GCNNGC 4 cut(s) 491, 495, 647, 1326
CciI TCATGA 1 cut(s) 1273
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 2 cut(s) 19, 493
Cfr13I GGNCC 6 cut(s) 108, 285, 521, 775, 1223, 1362
CseI GACGC 1 cut(s) 308
Csp6I GTAC 3 cut(s) 234, 1013, 1125
CviAII CATG 7 cut(s) 270, 490, 815, 973, 1274, 1325, 1366
CviQI GTAC 3 cut(s) 234, 1013, 1125
DdeI CTNAG 4 cut(s) 743, 1152, 1189, 1280
DpnI GATC 5 cut(s) 449, 1077, 1116, 1248, 1272
DpnII GATC 5 cut(s) 447, 1075, 1114, 1246, 1270
DrdI GACNNNNNNGTC 1 cut(s) 773
DseDI GACNNNNNNGTC 1 cut(s) 773
EaeI YGGCCR 1 cut(s) 495
EagI CGGCCG 1 cut(s) 495
Eam1104I CTCTTC 3 cut(s) 172, 180, 1301
EarI CTCTTC 3 cut(s) 172, 180, 1301
EclXI CGGCCG 1 cut(s) 495
Eco105I TACGTA 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 303, 771
Eco147I AGGCCT 1 cut(s) 1059
Eco47I GGWCC 4 cut(s) 108, 285, 775, 1223
Eco52I CGGCCG 1 cut(s) 495
Eco57I CTGAAG 3 cut(s) 1055, 1087, 1212
Eco72I CACGTG 1 cut(s) 938
EcoNI CCTNNNNNAGG 1 cut(s) 1256
EcoO109I RGGNCCY 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 517, 800
EcoT14I CCWWGG 2 cut(s) 303, 771
ErhI CCWWGG 2 cut(s) 303, 771
FaeI CATG 7 cut(s) 273, 493, 818, 976, 1277, 1328, 1369
FaqI GGGAC 3 cut(s) 94, 681, 761
FatI CATG 7 cut(s) 269, 489, 814, 972, 1273, 1324, 1365
FauI CCCGC 2 cut(s) 19, 81
FauNDI CATATG 1 cut(s) 641
FbaI TGATCA 2 cut(s) 1114, 1270
Fnu4HI GCNGC 4 cut(s) 24, 431, 739, 843
Fsp4HI GCNGC 4 cut(s) 24, 431, 739, 843
GlaI GCGC 1 cut(s) 206
GluI GCNGC 4 cut(s) 24, 431, 739, 843
GsuI CTGGAG 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 5 cut(s) 497, 522, 741, 1059, 1363
HapII CCGG 4 cut(s) 20, 371, 494, 579
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 7 cut(s) 273, 493, 818, 976, 1277, 1328, 1369
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 6 cut(s) 416, 582, 699, 830, 960, 1185
HpaII CCGG 4 cut(s) 20, 371, 494, 579
HphI GGTGA 5 cut(s) 127, 308, 763, 1070, 1315
Hpy166II GTNNAC 2 cut(s) 10, 288
Hpy188I TCNGA 2 cut(s) 798, 1231
Hpy188III TCNNGA 6 cut(s) 151, 579, 622, 1073, 1105, 1274
Hpy8I GTNNAC 2 cut(s) 10, 288
HpyAV CCTTC 7 cut(s) 49, 53, 420, 658, 1236, 1262, 1309
HpyCH4III ACNGT 2 cut(s) 619, 1129
HpyCH4IV ACGT 2 cut(s) 232, 937
HpyCH4V TGCA 9 cut(s) 468, 489, 649, 710, 782, 918, 1022, 1173, 1346
HpyF10VI GCNNNNNNNGC 5 cut(s) 376, 544, 811, 1325, 1352
HpyF3I CTNAG 4 cut(s) 743, 1152, 1189, 1280
HpySE526I ACGT 2 cut(s) 232, 937
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 7 cut(s) 273, 493, 818, 976, 1277, 1328, 1369
HspAI GCGC 1 cut(s) 205
Kpn2I TCCGGA 1 cut(s) 578
KroI GCCGGC 1 cut(s) 493
KroNI GCCGGC 1 cut(s) 495
Ksp22I TGATCA 2 cut(s) 1114, 1270
Kzo9I GATC 5 cut(s) 447, 1075, 1114, 1246, 1270
LmnI GCTCC 4 cut(s) 344, 376, 581, 610
Lsp1109I GCAGC 2 cut(s) 442, 829
MaeII ACGT 2 cut(s) 232, 937
MaeIII GTNAC 1 cut(s) 296
MalI GATC 5 cut(s) 449, 1077, 1116, 1248, 1272
MboI GATC 5 cut(s) 447, 1075, 1114, 1246, 1270
MboII GAAGA 7 cut(s) 31, 159, 162, 167, 647, 1318, 1324
MflI RGATCY 2 cut(s) 447, 1246
MhlI GDGCHC 1 cut(s) 269
MlyI GAGTC 3 cut(s) 591, 824, 1179
MmeI TCCRAC 1 cut(s) 1011
MroI TCCGGA 1 cut(s) 578
MroNI GCCGGC 1 cut(s) 493
MseI TTAA 8 cut(s) 98, 104, 455, 837, 870, 951, 1002, 1241
MslI CAYNNNNRTG 3 cut(s) 1145, 1161, 1377
MspA1I CMGCKG 1 cut(s) 1301
MspCI CTTAAG 1 cut(s) 1240
MspI CCGG 4 cut(s) 20, 371, 494, 579
MspR9I CCNGG 2 cut(s) 519, 802
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 2 cut(s) 519, 802
MwoI GCNNNNNNNGC 5 cut(s) 376, 544, 811, 1325, 1352
NaeI GCCGGC 1 cut(s) 495
NdeI CATATG 1 cut(s) 641
NdeII GATC 5 cut(s) 447, 1075, 1114, 1246, 1270
NgoMIV GCCGGC 1 cut(s) 493
NlaIII CATG 7 cut(s) 273, 493, 818, 976, 1277, 1328, 1369
NlaIV GGNNCC 5 cut(s) 110, 286, 340, 612, 777
NmeAIII GCCGAG 1 cut(s) 523
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 2 cut(s) 493, 1328
NspV TTCGAA 1 cut(s) 401
PaeI GCATGC 2 cut(s) 493, 1328
PagI TCATGA 1 cut(s) 1273
PceI AGGCCT 1 cut(s) 1059
PctI GAATGC 1 cut(s) 740
PdiI GCCGGC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 416, 699, 960
PkrI GCNGC 4 cut(s) 25, 432, 740, 844
PleI GAGTC 3 cut(s) 590, 824, 1179
PmaCI CACGTG 1 cut(s) 938
PmlI CACGTG 1 cut(s) 938
PpsI GAGTC 3 cut(s) 590, 824, 1179
Ppu21I YACGTR 2 cut(s) 233, 938
PpuMI RGGWCCY 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 837
PsiI TTATAA 1 cut(s) 861
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 517, 800
PspCI CACGTG 1 cut(s) 938
PspGI CCWGG 2 cut(s) 517, 800
PspN4I GGNNCC 5 cut(s) 110, 286, 340, 612, 777
PspPI GGNCC 6 cut(s) 108, 285, 521, 775, 1223, 1362
PspPPI RGGWCCY 1 cut(s) 108
PsuI RGATCY 2 cut(s) 447, 1246
RsaI GTAC 3 cut(s) 235, 1014, 1126
RsaNI GTAC 3 cut(s) 234, 1013, 1125
RseI CAYNNNNRTG 3 cut(s) 1145, 1161, 1377
SaqAI TTAA 8 cut(s) 98, 104, 455, 837, 870, 951, 1002, 1241
SatI GCNGC 4 cut(s) 24, 431, 739, 843
Sau3AI GATC 5 cut(s) 447, 1075, 1114, 1246, 1270
Sau96I GGNCC 6 cut(s) 108, 285, 521, 775, 1223, 1362
SchI GAGTC 3 cut(s) 591, 824, 1179
ScrFI CCNGG 2 cut(s) 519, 802
SduI GDGCHC 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 401
SgrAI CRCCGGYG 1 cut(s) 19
SinI GGWCC 4 cut(s) 108, 285, 775, 1223
SmiMI CAYNNNNRTG 3 cut(s) 1145, 1161, 1377
SmlI CTYRAG 2 cut(s) 442, 1240
SmoI CTYRAG 2 cut(s) 442, 1240
SnaBI TACGTA 1 cut(s) 233
SphI GCATGC 2 cut(s) 493, 1328
SseBI AGGCCT 1 cut(s) 1059
SsiI CCGC 6 cut(s) 23, 26, 88, 738, 749, 1301
SspI AATATT 1 cut(s) 757
StuI AGGCCT 1 cut(s) 1059
StyD4I CCNGG 2 cut(s) 517, 800
StyI CCWWGG 2 cut(s) 303, 771
TaaI ACNGT 2 cut(s) 619, 1129
TaiI ACGT 2 cut(s) 235, 940
TaqI TCGA 3 cut(s) 401, 585, 958
TauI GCSGC 2 cut(s) 26, 741
TfiI GAWTC 3 cut(s) 416, 699, 960
Tru1I TTAA 8 cut(s) 98, 104, 455, 837, 870, 951, 1002, 1241
Tru9I TTAA 8 cut(s) 98, 104, 455, 837, 870, 951, 1002, 1241
TscAI CASTG 2 cut(s) 298, 684
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 2 cut(s) 430, 842
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 8 cut(s) 174, 215, 305, 347, 831, 952, 961, 1290
TspRI CASTG 2 cut(s) 298, 684
Vha464I CTTAAG 1 cut(s) 1240
VpaK11BI GGWCC 4 cut(s) 108, 285, 775, 1223
VspI ATTAAT 1 cut(s) 837
XagI CCTNNNNNAGG 1 cut(s) 1256
XapI RAATTY 4 cut(s) 247, 528, 591, 791
XceI RCATGY 2 cut(s) 493, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.