Rroxscaffold_4G00332300

Cyclic pyranopterin monophosphate synthase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
66431679 .. 66436260
4582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332300.1

Sequence Viewer

Length: 1278 bp
ATGGTATACTACGGCCGAGATTTGAAGTCGCGTATCCGGACAGAGGATCCAAGACTAGTCAATTGCTATCAGAAGTTGAGGCGGCCTTTCGACTCTTCCAAAAGGAAGGAAGGAAGGACTAAAACACTTAAAACACATGAGGAGGAGGCGGGTAAGTGCTCATGCTTTGAAACTGGGTCCACCAACGGTGATGCCAAGGGCTTACTTCATCAGCAAATGCGAATGAATGGCTCCCCTTATGCAACTTGTTGTGCCAAGTTGCCGGAGGAGCTTCCAAAAGATAATCCCGTTTCCAATATGTTGATTGATTCTTTTGGAAGGCAGCACACTTACTTGAGGATCTCTTTAACAGAGCGTTGCAATCTGCGATGTCAATACTGCATGCCGGCCGAGGGTGTCAGCCTCACTCCTGGCCCTCAAATTCTCTCACAGAATGAGCTTGTTCGCTTGGCTAATCTGTTTGTAAGCTCAGGAGTCAATAAAATTCGTTTGACTGGAGGGGAGCCAACCGTAAGGAAAGATATTGAAGACATATGCTCACACTTGTCTAACTTGAAGGGATTAAAAACACTGGCTATCACTACTAATGGAATTACTCTTGCACGAAAACTTCCCAAGTTGAAAGAATGCGGTCTTAGTGCGGTGAATATTAGTTTAGACACCTTGGTCCCTGCAAAGTTTGAATTTCTGACCAGGCGTAAAGGGCATGAAAGGGTTATGGACTCAATTAATGCTGCCATAGACCTCGGTTATAATCCTGTTAAGGTAAATTGCGTTGTAATGCGTGGGTTCAATGATGATGAGATTTGCAATTTCGTAGAGCTGACACGTGAAAAGCCAATTAACATTCGATTCATTGAGTTCATGCCTTTTGATGGAAATGTATGGAATGTTAAGAAACTTGTACCCTACGCAGAAATGTTGGATAGAGTGGCAAAACATTTTACAGGCCTAAAAAGACTTCAGGATCACCCAACTGATACTGCCAAGAACTTCAGGATAGATGATCATCTTGGTACAGTTTCTTTTATCACATCAATGACTGAGCATTTTTGTGCTGGTTGCAATAGATTGCGACTCTTAGCTGATGGGAACTTCAAAGTTTGCTTGTTTGGTCCTTCAGAGGTCAGCTTAAGAGATCCCCTTCGGCAGGGTGCTGATGATCATGAAGTAAGGGAAATAATTGGTTCAGCGGTGAAGAGGAAGAAGGCTTCTCATGCTGGAATGTTTGACATTGCAAAGACAGCAAATAGGCCCATGATACATATTGGTGGCTAA

Protein Analysis

425

Amino Acids

47.78

Weight (kDa)

9.17

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Radical_SAM PF04055 114 - 275 3.5e-34 Radical SAM superfamily
Mob_synth_C PF06463 281 - 407 8.7e-37 Molybdenum Cofactor Synthesis C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AasI GACNNNNNNGTC 1 cut(s) 665
AccI GTMKAC 1 cut(s) 6
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 5 cut(s) 82, 149, 630, 641, 1193
AclWI GGATC 5 cut(s) 41, 54, 347, 975, 1133
AcoI YGGCCR 2 cut(s) 13, 387
AcsI RAATTY 3 cut(s) 420, 483, 683
AcuI CTGAAG 3 cut(s) 947, 979, 1104
AcvI CACGTG 1 cut(s) 830
AfaI GTAC 2 cut(s) 906, 1018
AfiI CCNNNNNNNGG 4 cut(s) 43, 392, 875, 1150
AflII CTTAAG 1 cut(s) 1132
AflIII ACRYGT 1 cut(s) 827
AgsI TTSAA 8 cut(s) 25, 170, 527, 556, 622, 683, 793, 1099
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 2 cut(s) 409, 692
AluBI AGCT 6 cut(s) 271, 439, 468, 823, 1085, 1131
AluI AGCT 6 cut(s) 271, 439, 468, 823, 1085, 1131
Alw21I GWGCWC 1 cut(s) 161
AlwI GGATC 5 cut(s) 41, 54, 347, 975, 1133
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 6 cut(s) 13, 83, 387, 412, 949, 1253
ApeKI GCWGC 2 cut(s) 322, 734
ApoI RAATTY 3 cut(s) 420, 483, 683
AseI ATTAAT 1 cut(s) 729
AspS9I GGNCC 5 cut(s) 177, 413, 667, 1115, 1254
AsuHPI GGTGA 4 cut(s) 200, 655, 962, 1207
AvaII GGWCC 3 cut(s) 177, 667, 1115
BamHI GGATCC 1 cut(s) 46
BbrPI CACGTG 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 334, 721
BccI CCATC 2 cut(s) 869, 1082
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 411, 694
BciVI GTATCC 1 cut(s) 44
BclI TGATCA 2 cut(s) 1006, 1162
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 1132
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 3 cut(s) 83, 323, 735
BlsI GCNGC 3 cut(s) 84, 324, 736
Bme1390I CCNGG 2 cut(s) 411, 694
Bme18I GGWCC 3 cut(s) 177, 667, 1115
BmgT120I GGNCC 5 cut(s) 177, 413, 667, 1115, 1254
BmiI GGNNCC 5 cut(s) 48, 178, 232, 504, 669
BmrFI CCNGG 2 cut(s) 411, 694
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 830
BsaBI GATNNNNATC 1 cut(s) 1008
BsaJI CCNNGG 4 cut(s) 195, 390, 663, 745
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 392, 875, 1150
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 3 cut(s) 178, 499, 576
Bse3DI GCAATG 1 cut(s) 1233
Bse8I GATNNNNATC 1 cut(s) 1008
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 2 cut(s) 411, 694
BseDI CCNNGG 4 cut(s) 195, 390, 663, 745
BseJI GATNNNNATC 1 cut(s) 1008
BseLI CCNNNNNNNGG 4 cut(s) 43, 392, 875, 1150
BseMI GCAATG 1 cut(s) 1233
BseMII CTCAG 2 cut(s) 483, 1035
BseNI ACTGG 3 cut(s) 178, 499, 576
BseRI GAGGAG 3 cut(s) 155, 158, 281
BseX3I CGGCCG 2 cut(s) 13, 387
BseXI GCAGC 2 cut(s) 334, 721
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 2 cut(s) 16, 390
BshFI GGCC 6 cut(s) 15, 85, 389, 414, 951, 1255
BsiEI CGRYCG 2 cut(s) 16, 390
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 3 cut(s) 37, 263, 386
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 4 cut(s) 43, 392, 875, 1150
BsmFI GGGAC 1 cut(s) 653
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 6 cut(s) 15, 85, 389, 414, 951, 1255
Bsp1286I GDGCHC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 6 cut(s) 46, 339, 967, 1006, 1138, 1162
BspACI CCGC 5 cut(s) 82, 149, 630, 641, 1193
BspANI GGCC 6 cut(s) 15, 85, 389, 414, 951, 1255
BspCNI CTCAG 2 cut(s) 482, 1036
BspEI TCCGGA 1 cut(s) 36
BspFNI CGCG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 1165
BspLI GGNNCC 5 cut(s) 48, 178, 232, 504, 669
BspPI GGATC 5 cut(s) 41, 54, 347, 975, 1133
BspTI CTTAAG 1 cut(s) 1132
BsrDI GCAATG 1 cut(s) 1233
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 3 cut(s) 178, 499, 576
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 4 cut(s) 195, 390, 663, 745
BssMI GATC 6 cut(s) 46, 339, 967, 1006, 1138, 1162
BssNAI GTATAC 1 cut(s) 7
BssT1I CCWWGG 2 cut(s) 195, 663
Bst1107I GTATAC 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 411, 694
Bst4CI ACNGT 3 cut(s) 188, 511, 1021
Bst6I CTCTTC 2 cut(s) 100, 1193
BstAFI CTTAAG 1 cut(s) 1132
BstBAI YACGTR 1 cut(s) 830
BstC8I GCNNGC 2 cut(s) 383, 387
BstDEI CTNAG 4 cut(s) 469, 635, 1044, 1081
BstENI CCTNNNNNAGG 1 cut(s) 1148
BstFNI CGCG 1 cut(s) 31
BstKTI GATC 6 cut(s) 49, 342, 970, 1009, 1141, 1165
BstMBI GATC 6 cut(s) 46, 339, 967, 1006, 1138, 1162
BstMCI CGRYCG 2 cut(s) 16, 390
BstMWI GCNNNNNNNGC 4 cut(s) 268, 703, 1217, 1244
BstNI CCWGG 2 cut(s) 411, 694
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 409, 692
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 334, 721
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 3 cut(s) 46, 339, 1138
BstYI RGATCY 3 cut(s) 46, 339, 1138
BstZ17I GTATAC 1 cut(s) 7
BstZI CGGCCG 2 cut(s) 13, 387
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 6 cut(s) 15, 85, 389, 414, 951, 1255
BtgZI GCGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 2 cut(s) 383, 387
CciI TCATGA 1 cut(s) 1165
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 5 cut(s) 177, 413, 667, 1115, 1254
Csp6I GTAC 2 cut(s) 905, 1017
CviAII CATG 8 cut(s) 137, 162, 382, 707, 865, 1166, 1217, 1258
CviQI GTAC 2 cut(s) 905, 1017
DdeI CTNAG 4 cut(s) 469, 635, 1044, 1081
DpnI GATC 6 cut(s) 48, 341, 969, 1008, 1140, 1164
DpnII GATC 6 cut(s) 46, 339, 967, 1006, 1138, 1162
DrdI GACNNNNNNGTC 1 cut(s) 665
DseDI GACNNNNNNGTC 1 cut(s) 665
EaeI YGGCCR 2 cut(s) 13, 387
EagI CGGCCG 2 cut(s) 13, 387
Eam1104I CTCTTC 2 cut(s) 100, 1193
EarI CTCTTC 2 cut(s) 100, 1193
EclXI CGGCCG 2 cut(s) 13, 387
Eco130I CCWWGG 2 cut(s) 195, 663
Eco147I AGGCCT 1 cut(s) 951
Eco47I GGWCC 3 cut(s) 177, 667, 1115
Eco52I CGGCCG 2 cut(s) 13, 387
Eco57I CTGAAG 3 cut(s) 947, 979, 1104
Eco72I CACGTG 1 cut(s) 830
EcoNI CCTNNNNNAGG 1 cut(s) 1148
EcoRII CCWGG 2 cut(s) 409, 692
EcoT14I CCWWGG 2 cut(s) 195, 663
ErhI CCWWGG 2 cut(s) 195, 663
FaeI CATG 8 cut(s) 140, 165, 385, 710, 868, 1169, 1220, 1261
FaqI GGGAC 1 cut(s) 653
FatI CATG 8 cut(s) 136, 161, 381, 706, 864, 1165, 1216, 1257
FauI CCCGC 1 cut(s) 142
FauNDI CATATG 1 cut(s) 533
FbaI TGATCA 2 cut(s) 1006, 1162
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 83, 323, 735
Fsp4HI GCNGC 3 cut(s) 83, 323, 735
FspBI CTAG 1 cut(s) 56
GluI GCNGC 3 cut(s) 83, 323, 735
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 6 cut(s) 15, 85, 389, 414, 951, 1255
HapII CCGG 3 cut(s) 37, 263, 386
Hin1II CATG 8 cut(s) 140, 165, 385, 710, 868, 1169, 1220, 1261
HinfI GANTC 6 cut(s) 92, 308, 474, 722, 852, 1077
HpaII CCGG 3 cut(s) 37, 263, 386
HphI GGTGA 4 cut(s) 200, 655, 962, 1207
Hpy166II GTNNAC 2 cut(s) 7, 180
Hpy188I TCNGA 3 cut(s) 72, 690, 1123
Hpy188III TCNNGA 5 cut(s) 37, 471, 965, 997, 1166
Hpy8I GTNNAC 2 cut(s) 7, 180
HpyAV CCTTC 8 cut(s) 100, 104, 108, 312, 550, 1128, 1154, 1201
HpyCH4III ACNGT 3 cut(s) 188, 511, 1021
HpyCH4IV ACGT 1 cut(s) 829
HpyCH4V TGCA 8 cut(s) 242, 360, 381, 602, 674, 810, 1065, 1238
HpyF10VI GCNNNNNNNGC 4 cut(s) 268, 703, 1217, 1244
HpyF3I CTNAG 4 cut(s) 469, 635, 1044, 1081
HpySE526I ACGT 1 cut(s) 829
Hsp92II CATG 8 cut(s) 140, 165, 385, 710, 868, 1169, 1220, 1261
Kpn2I TCCGGA 1 cut(s) 36
KroI GCCGGC 1 cut(s) 385
KroNI GCCGGC 1 cut(s) 387
Ksp22I TGATCA 2 cut(s) 1006, 1162
Kzo9I GATC 6 cut(s) 46, 339, 967, 1006, 1138, 1162
LmnI GCTCC 3 cut(s) 236, 268, 502
Lsp1109I GCAGC 2 cut(s) 334, 721
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 829
MalI GATC 6 cut(s) 48, 341, 969, 1008, 1140, 1164
MboI GATC 6 cut(s) 46, 339, 967, 1006, 1138, 1162
MboII GAAGA 4 cut(s) 87, 539, 1210, 1216
MfeI CAATTG 1 cut(s) 61
MflI RGATCY 3 cut(s) 46, 339, 1138
MhlI GDGCHC 1 cut(s) 161
MlyI GAGTC 4 cut(s) 86, 483, 716, 1071
MmeI TCCRAC 1 cut(s) 903
MroI TCCGGA 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 385
MseI TTAA 8 cut(s) 129, 347, 563, 729, 762, 843, 894, 1133
MslI CAYNNNNRTG 3 cut(s) 1037, 1053, 1269
MspA1I CMGCKG 1 cut(s) 1193
MspCI CTTAAG 1 cut(s) 1132
MspI CCGG 3 cut(s) 37, 263, 386
MspR9I CCNGG 2 cut(s) 411, 694
MunI CAATTG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 2 cut(s) 411, 694
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 4 cut(s) 268, 703, 1217, 1244
NaeI GCCGGC 1 cut(s) 387
NdeI CATATG 1 cut(s) 533
NdeII GATC 6 cut(s) 46, 339, 967, 1006, 1138, 1162
NgoMIV GCCGGC 1 cut(s) 385
NlaIII CATG 8 cut(s) 140, 165, 385, 710, 868, 1169, 1220, 1261
NlaIV GGNNCC 5 cut(s) 48, 178, 232, 504, 669
NmeAIII GCCGAG 2 cut(s) 41, 415
NspI RCATGY 1 cut(s) 385
PaeI GCATGC 1 cut(s) 385
PagI TCATGA 1 cut(s) 1165
PceI AGGCCT 1 cut(s) 951
PctI GAATGC 1 cut(s) 632
PdiI GCCGGC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 308, 852
PkrI GCNGC 3 cut(s) 84, 324, 736
PleI GAGTC 4 cut(s) 86, 482, 716, 1071
PmaCI CACGTG 1 cut(s) 830
PmlI CACGTG 1 cut(s) 830
PpsI GAGTC 4 cut(s) 86, 482, 716, 1071
Ppu21I YACGTR 1 cut(s) 830
PshBI ATTAAT 1 cut(s) 729
PsiI TTATAA 1 cut(s) 753
Psp6I CCWGG 2 cut(s) 409, 692
PspCI CACGTG 1 cut(s) 830
PspGI CCWGG 2 cut(s) 409, 692
PspN4I GGNNCC 5 cut(s) 48, 178, 232, 504, 669
PspPI GGNCC 5 cut(s) 177, 413, 667, 1115, 1254
PsuI RGATCY 3 cut(s) 46, 339, 1138
RsaI GTAC 2 cut(s) 906, 1018
RsaNI GTAC 2 cut(s) 905, 1017
RseI CAYNNNNRTG 3 cut(s) 1037, 1053, 1269
SaqAI TTAA 8 cut(s) 129, 347, 563, 729, 762, 843, 894, 1133
SatI GCNGC 3 cut(s) 83, 323, 735
Sau3AI GATC 6 cut(s) 46, 339, 967, 1006, 1138, 1162
Sau96I GGNCC 5 cut(s) 177, 413, 667, 1115, 1254
SchI GAGTC 4 cut(s) 86, 483, 716, 1071
ScrFI CCNGG 2 cut(s) 411, 694
SduI GDGCHC 1 cut(s) 161
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 3 cut(s) 177, 667, 1115
SmiMI CAYNNNNRTG 3 cut(s) 1037, 1053, 1269
SmlI CTYRAG 2 cut(s) 334, 1132
SmoI CTYRAG 2 cut(s) 334, 1132
SpeI ACTAGT 1 cut(s) 55
SphI GCATGC 1 cut(s) 385
SseBI AGGCCT 1 cut(s) 951
SsiI CCGC 5 cut(s) 82, 149, 630, 641, 1193
SspI AATATT 1 cut(s) 649
SspMI CTAG 1 cut(s) 56
StuI AGGCCT 1 cut(s) 951
StyD4I CCNGG 2 cut(s) 409, 692
StyI CCWWGG 2 cut(s) 195, 663
TaaI ACNGT 3 cut(s) 188, 511, 1021
TaiI ACGT 1 cut(s) 832
TaqI TCGA 2 cut(s) 90, 850
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 2 cut(s) 308, 852
Tru1I TTAA 8 cut(s) 129, 347, 563, 729, 762, 843, 894, 1133
Tru9I TTAA 8 cut(s) 129, 347, 563, 729, 762, 843, 894, 1133
TscAI CASTG 1 cut(s) 576
TseI GCWGC 2 cut(s) 322, 734
TspDTI ATGAA 6 cut(s) 197, 239, 723, 844, 853, 1182
TspRI CASTG 1 cut(s) 576
Vha464I CTTAAG 1 cut(s) 1132
VpaK11BI GGWCC 3 cut(s) 177, 667, 1115
VspI ATTAAT 1 cut(s) 729
XagI CCTNNNNNAGG 1 cut(s) 1148
XapI RAATTY 3 cut(s) 420, 483, 683
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.