pycom02g26760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002342
Physical Location & Seq
Forward (+)
24560407 .. 24561115
709 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26760.2

Sequence Viewer

Length: 357 bp
ATGTCACCCCAAAAAATAAGCTTCTCGGCGCTTGAAAAGAAAAAAAAGACGGAGAAGCAGACGAGACCACCAAAGCTTCCCTTTTCCCATCCCTTCCCAATATATCCATCACCCCCAAACTTAAGATTACTACGAATTTATTTATTTAGGAAAGAGGGAGGGAGGGTCGGTTTCTTTCTTTCATACCTCCACCGCCGCCACCACCACCATGATGATGATGAAGCGTCGTCACCATTTCAGCTTTGCCCGCTCGGCTTTGGAATTGGGCTTGGTTTCAATTTCCAATTCCAGTTGCTTCTTGGCCCACTTGGAAACTGCCTCGTCTTCCACCTCCGGAATTGGAATTATTCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.75

Weight (kDa)

9.9

Isoelectric Point (pI)

61.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 3 cut(s) 193, 196, 248
AcsI RAATTY 1 cut(s) 135
AflII CTTAAG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 35, 277
AluBI AGCT 3 cut(s) 21, 76, 241
AluI AGCT 3 cut(s) 21, 76, 241
Alw26I GTCTC 1 cut(s) 58
Aor13HI TCCGGA 1 cut(s) 333
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 135
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 102, 222
BbsI GAAGAC 1 cut(s) 316
BccI CCATC 2 cut(s) 96, 115
BcoDI GTCTC 1 cut(s) 58
BfoI RGCGCY 1 cut(s) 32
BfrI CTTAAG 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 4 cut(s) 150, 154, 180, 184
Bse1I ACTGG 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 333
BseGI GGATG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 289
BshFI GGCC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 58
Bsp13I TCCGGA 1 cut(s) 333
BspACI CCGC 3 cut(s) 193, 196, 248
BspANI GGCC 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 333
BspTI CTTAAG 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 250
BsrI ACTGG 1 cut(s) 289
BstAFI CTTAAG 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 248
BstF5I GGATG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 247, 252
BstV2I GAAGAC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 1 cut(s) 213
CviAII CATG 2 cut(s) 209, 351
CviJI RGCY 6 cut(s) 21, 76, 241, 255, 268, 303
CviKI_1 RGCY 6 cut(s) 21, 76, 241, 255, 268, 303
Eco31I GGTCTC 1 cut(s) 58
FaeI CATG 2 cut(s) 212, 354
FaiI YATR 4 cut(s) 103, 184, 210, 352
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FatI CATG 2 cut(s) 208, 350
FauI CCCGC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 196
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 334
HgaI GACGC 1 cut(s) 213
HhaI GCGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 212, 354
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 2 cut(s) 19, 74
HpaII CCGG 1 cut(s) 334
HphI GGTGA 2 cut(s) 102, 222
Hpy188III TCNNGA 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 252
Hsp92II CATG 2 cut(s) 212, 354
HspAI GCGC 1 cut(s) 29
Kpn2I TCCGGA 1 cut(s) 333
LpnPI CCDG 2 cut(s) 302, 347
MaeIII GTNAC 2 cut(s) 3, 228
MbiI CCGCTC 1 cut(s) 250
MboII GAAGA 1 cut(s) 316
MluCI AATT 6 cut(s) 135, 261, 277, 284, 337, 343
MnlI CCTC 6 cut(s) 148, 152, 156, 197, 329, 341
MroI TCCGGA 1 cut(s) 333
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 3 cut(s) 207, 210, 213
MspCI CTTAAG 1 cut(s) 121
MspI CCGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 247, 252
NlaIII CATG 2 cut(s) 212, 354
NmeAIII GCCGAG 2 cut(s) 5, 231
NmuCI GTSAC 2 cut(s) 3, 228
PkrI GCNGC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 302
RseI CAYNNNNRTG 3 cut(s) 207, 210, 213
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 302
SetI ASST 5 cut(s) 23, 78, 189, 243, 333
SmiMI CAYNNNNRTG 3 cut(s) 207, 210, 213
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 6 cut(s) 135, 261, 277, 284, 337, 343
SsiI CCGC 3 cut(s) 193, 196, 248
TasI AATT 6 cut(s) 135, 261, 277, 284, 337, 343
TauI GCSGC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseFI GTSAC 2 cut(s) 3, 228
Tsp45I GTSAC 2 cut(s) 3, 228
TspDTI ATGAA 3 cut(s) 171, 234, 339
TspGWI ACGGA 1 cut(s) 65
Vha464I CTTAAG 1 cut(s) 121
XapI RAATTY 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.