Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000008

Orthogroup ID

OG0002342

Physical Location & Seq

Genomic Coordinates Reverse (-)

38541 .. 40745

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RorugPtG0002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAATATTTTTGCTTCTCATTTCGGGCAATTAGCAATAATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAGGCATGGGTACAGGATCCTTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCAGCTGTAGAGGCTTTTACTCGTGGAGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGGTGGTATACAATTGGGTTACGTACTAATGAGGATCTTTATACTGGAGCTCTTTTTCTATTATTTCTTTCTGCCATATCCTTAATAGCGGGTTGGTTACACCTACAACCGAAATGGAAACCGAGCGTTTCGTGGTTTAAAAATGCCGAATCTCGTCTCAACCACCATTTGTCAGGACTTTTCGGAGTAAGTTCCTTGGCTTGGACAGGACATTTAGTTCATGTCGCTATTCCTGGATCCAGGGGAGAAAACGTTCGGTGGAATAATTTCTTAGATGTATTGCCCCATCCCCAAGGATTAGGCCCACTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAACCCCGATTCAAGTAGTCATTTATTTGGTACCTCCCAAGGGGCAGGAACTGCCATTCTAACCCTTCTCGGAGGATTCCACCCACAAACGCAAAGTTTATGGCTGACTGATATGGCCCATCATCATTTAGCTATTGCATTTATTTTTCTGATTGCCGGTCATATGTATAGAACGAATTTCGGGATTGGGCACAGTATAAAAAATCTTTTAGAAGCGCATATTCCTCCGGGGGGACGATTAGGGCGTGGGCATAAGGGTCTTTATGACACAATCAACAATTCGATTCATTTTCAATTAGGCCTTGCTCTAGCCTCTTTGGGGGTTATTACGTCCTTGGTCGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCGCAAGACTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGCAGGATTCATTATGACAGGGGCTTTTGCTCACGGAGCTATATTTTTTATTAGAGATTACAACCCGGAACAAAATGAGGATAATGTATTGGCAAGAATGTTAGACCACAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGTCTCTTTTTAGGGTTCCATACTTTGGGCCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTGATCGAACCTATATTTGCTCAATGGATACAATCTGCTCATGGTAAAACTGCATATGGGTTCGATGTACTTTTATCTTCAACAAATGGTCCAGCGTTCAATGCGGGTCGAAGCATATGGTTACCCGGTTGGTTAAATGCTGTTAATGAGAATAGTAATTCACTATTCTTAACAATAGGACCGGGAGACTTCTTGGTTCATCATGCTATTGCTCTAGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGTGGTTCCAAGTTAATGCCAGATAAAAAAGATTTTGGTTATAGTTTTCCCTGCGATGGTCCGGGACGAGGCGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGATGGGTTACTTTTTATTGGCATTGGAAGCACATCACATTATGGCAGGGTAACGTTTCACAGTTTAATGAGTCTTCCACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCCCAACTTATTAATGGATATAACCCTTTTGGAATGAATAGTTTATCGGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAAGAATTGATTGAAACTTTAGCCTGGGCTCATGAACGCACACCTTTAGCTAATTTGATTCGATGGAGAGATAAACCGGTCGCTCTTTCTATTGTACAAGCGAGATTAGTTGGATTAGCCCACTTTTCTGTCGGTTATATATTTACTTATGCAGCTTTCTTGATTGCCTCTACATCGGGCAAGTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006777 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019538 GO:0019637 GO:0019720 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0051189 GO:0071704 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04122 map00790 map01100 map04122

Pfam Domains

Protein Families

Fer4_12 Mob_synth_C Radical_SAM

Protein Analysis

734

Amino Acids

82.37

Weight (kDa)

6.8

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaA_PsaB	PF00223	8 - 727	0.0	Photosystem I psaA/psaB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31955 AT2G31955 AT2G31955 AT2G31955 AT2G31955 AT2G31955
fragaria_vesca	FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330 FvH4_5g30330
malus_domestica	MD02G1319400.v1.1
prunus_persica	Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1 Prupe.1G561800_v2.0.a1
pyrus_communis	pycom02g26760
rosa_chinensis	RchiOBHm_Chr1g0313251
rosa_laevigata	RLG00000030811
rosa_multiflora	Rmu_sc0005182.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332300
rosa_rugosa	RorugPtG0002000.1 RorugPtG0002100
rosa_samantha	Rh1AG002100 Rh1CG004100 Rh1CG006500 Rh1DG001900 Rh5BG434700
rosa_wichuraiana	Rw1G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1075
Acc65I	GGTACC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	734
AccB7I	CCANNNNNTGG	2 cut(s)	1300, 1764
AccI	GTMKAC	1 cut(s)	374
AccIII	TCCGGA	2 cut(s)	185, 1345
AciI	CCGC	5 cut(s)	81, 455, 1463, 1695, 2002
AclI	AACGTT	2 cut(s)	618, 1815
AclWI	GGATC	7 cut(s)	233, 246, 272, 285, 408, 597, 610
AcsI	RAATTY	2 cut(s)	217, 880
AcvI	CACGTG	1 cut(s)	1625
AfaI	GTAC	8 cut(s)	234, 391, 736, 1058, 1342, 1428, 1699, 2109
AflIII	ACRYGT	2 cut(s)	247, 1053
AgeI	ACCGGT	1 cut(s)	2089
AgsI	TTSAA	5 cut(s)	717, 998, 1440, 1459, 2027
AjnI	CCWGG	4 cut(s)	598, 605, 1997, 2036
AloI	GAACNNNNNNTCC	4 cut(s)	567, 599, 603, 635
Alw21I	GWGCWC	2 cut(s)	328, 418
Alw26I	GTCTC	3 cut(s)	527, 1283, 1539
AlwI	GGATC	7 cut(s)	233, 246, 272, 285, 408, 597, 610
AlwNI	CAGNNNCTG	1 cut(s)	755
Aor13HI	TCCGGA	2 cut(s)	185, 1345
AoxI	GGCC	6 cut(s)	331, 667, 819, 1003, 1272, 1303
ApeKI	GCWGC	2 cut(s)	1106, 2165
ApoI	RAATTY	2 cut(s)	217, 880
ArsI	GACNNNNNNTTYG	2 cut(s)	1950, 1982
AseI	ATTAAT	1 cut(s)	1896
AsiGI	ACCGGT	1 cut(s)	2089
Asp700I	GAANNNNTTC	2 cut(s)	618, 632
Asp718I	GGTACC	1 cut(s)	734
AspLEI	GCGC	2 cut(s)	922, 1087
AspS9I	GGNCC	9 cut(s)	43, 332, 668, 820, 1272, 1303, 1448, 1538, 1682
AsuC2I	CCSGG	5 cut(s)	933, 1199, 1485, 1542, 1686
AsuHPI	GGTGA	1 cut(s)	1115
AvaII	GGWCC	4 cut(s)	43, 1448, 1538, 1682
BaeGI	GKGCMC	1 cut(s)	897
BamHI	GGATCC	3 cut(s)	238, 277, 602
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	2 cut(s)	418, 2044
BauI	CACGAG	1 cut(s)	315
BbrPI	CACGTG	1 cut(s)	1625
BbsI	GAAGAC	1 cut(s)	1827
Bbv12I	GWGCWC	2 cut(s)	328, 418
BbvI	GCAGC	2 cut(s)	1093, 2177
BccI	CCATC	7 cut(s)	660, 831, 1673, 1758, 1843, 1848, 2070
BciT130I	CCWGG	4 cut(s)	600, 607, 1999, 2038
BciVI	GTATCC	1 cut(s)	1380
BcnI	CCSGG	5 cut(s)	933, 1199, 1485, 1542, 1686
BcoDI	GTCTC	3 cut(s)	527, 1283, 1539
BfaI	CTAG	2 cut(s)	1013, 1574
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	1075
BfuI	GTATCC	1 cut(s)	1380
BisI	GCNGC	2 cut(s)	1107, 2166
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	2 cut(s)	1108, 2167
Bme1390I	CCNGG	9 cut(s)	600, 607, 933, 1199, 1485, 1542, 1686, 1999, 2038
Bme18I	GGWCC	4 cut(s)	43, 1448, 1538, 1682
BmgT120I	GGNCC	9 cut(s)	43, 332, 668, 820, 1272, 1303, 1448, 1538, 1682
BmiI	GGNNCC	7 cut(s)	45, 240, 279, 604, 736, 1292, 1630
BmrFI	CCNGG	9 cut(s)	600, 607, 933, 1199, 1485, 1542, 1686, 1999, 2038
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	1609
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	1827
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	1086
BpuMI	CCSGG	5 cut(s)	933, 1199, 1485, 1542, 1686
BsaAI	YACGTR	2 cut(s)	389, 1625
BsaJI	CCNNGG	9 cut(s)	17, 28, 561, 606, 658, 742, 932, 1038, 2037
BsaWI	WCCGGW	3 cut(s)	185, 1345, 2089
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bse118I	RCCGGY	2 cut(s)	860, 2089
Bse1I	ACTGG	4 cut(s)	335, 415, 1275, 1981
BseAI	TCCGGA	2 cut(s)	185, 1345
BseBI	CCWGG	4 cut(s)	600, 607, 1999, 2038
BseDI	CCNNGG	9 cut(s)	17, 28, 561, 606, 658, 742, 932, 1038, 2037
BseGI	GGATG	5 cut(s)	652, 1752, 1769, 1859, 1950
BseMII	CTCAG	2 cut(s)	53, 105
BseNI	ACTGG	4 cut(s)	335, 415, 1275, 1981
BseSI	GKGCMC	1 cut(s)	897
BseXI	GCAGC	2 cut(s)	1093, 2177
Bsh1285I	CGRYCG	1 cut(s)	2094
BshFI	GGCC	6 cut(s)	333, 669, 821, 1005, 1274, 1305
BshNI	GGYRCC	1 cut(s)	734
BshTI	ACCGGT	1 cut(s)	2089
BsiEI	CGRYCG	1 cut(s)	2094
BsiHKAI	GWGCWC	2 cut(s)	328, 418
BsiSI	CCGG	9 cut(s)	186, 861, 932, 1199, 1346, 1485, 1541, 1685, 2090
BslFI	GGGAC	3 cut(s)	951, 1701, 1733
BsmAI	GTCTC	3 cut(s)	527, 1283, 1539
BsmBI	CGTCTC	1 cut(s)	527
BsmFI	GGGAC	3 cut(s)	951, 1701, 1733
BsnI	GGCC	6 cut(s)	333, 669, 821, 1005, 1274, 1305
Bsp1286I	GDGCHC	4 cut(s)	328, 418, 897, 2044
Bsp13I	TCCGGA	2 cut(s)	185, 1345
Bsp1407I	TGTACA	1 cut(s)	2107
Bsp143I	GATC	6 cut(s)	238, 277, 400, 602, 1362, 1596
Bsp1720I	GCTNAGC	1 cut(s)	34
BspACI	CCGC	5 cut(s)	81, 455, 1463, 1695, 2002
BspANI	GGCC	6 cut(s)	333, 669, 821, 1005, 1274, 1305
BspCNI	CTCAG	2 cut(s)	52, 106
BspEI	TCCGGA	2 cut(s)	185, 1345
BspHI	TCATGA	2 cut(s)	100, 2044
BspLI	GGNNCC	7 cut(s)	45, 240, 279, 604, 736, 1292, 1630
BspMI	ACCTGC	1 cut(s)	1075
BspPI	GGATC	7 cut(s)	233, 246, 272, 285, 408, 597, 610
BspT107I	GGYRCC	1 cut(s)	734
BsrFI	RCCGGY	2 cut(s)	860, 2089
BsrGI	TGTACA	1 cut(s)	2107
BsrI	ACTGG	4 cut(s)	335, 415, 1275, 1981
BssAI	RCCGGY	2 cut(s)	860, 2089
BssECI	CCNNGG	9 cut(s)	17, 28, 561, 606, 658, 742, 932, 1038, 2037
BssMI	GATC	6 cut(s)	238, 277, 400, 602, 1362, 1596
BssNAI	GTATAC	1 cut(s)	375
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	6 cut(s)	17, 28, 561, 658, 742, 1038
Bst1107I	GTATAC	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	4 cut(s)	600, 607, 1999, 2038
Bst4CI	ACNGT	2 cut(s)	899, 1824
Bst6I	CTCTTC	1 cut(s)	1888
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstAUI	TGTACA	1 cut(s)	2107
BstBAI	YACGTR	2 cut(s)	389, 1625
BstC8I	GCNNGC	1 cut(s)	1332
BstDEI	CTNAG	5 cut(s)	34, 39, 114, 637, 1600
BstEII	GGTNACC	1 cut(s)	1479
BstF5I	GGATG	5 cut(s)	652, 1752, 1769, 1859, 1950
BstHHI	GCGC	2 cut(s)	922, 1087
BstKTI	GATC	6 cut(s)	241, 280, 403, 605, 1365, 1599
BstMAI	GTCTC	3 cut(s)	527, 1283, 1539
BstMBI	GATC	6 cut(s)	238, 277, 400, 602, 1362, 1596
BstMCI	CGRYCG	1 cut(s)	2094
BstMWI	GCNNNNNNNGC	8 cut(s)	305, 755, 1082, 1169, 1460, 1619, 1721, 1789
BstNI	CCWGG	4 cut(s)	600, 607, 1999, 2038
BstNSI	RCATGY	2 cut(s)	251, 1057
BstPI	GGTNACC	1 cut(s)	1479
BstSCI	CCNGG	9 cut(s)	598, 605, 931, 1197, 1483, 1540, 1684, 1997, 2036
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	897
BstSNI	TACGTA	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	1093, 2177
BstV2I	GAAGAC	1 cut(s)	1827
BstX2I	RGATCY	4 cut(s)	238, 277, 400, 602
BstYI	RGATCY	4 cut(s)	238, 277, 400, 602
BstZ17I	GTATAC	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	1380
BsuRI	GGCC	6 cut(s)	333, 669, 821, 1005, 1274, 1305
BtgZI	GCGATG	2 cut(s)	1117, 1692
BtsCI	GGATG	5 cut(s)	652, 1752, 1769, 1859, 1950
BtsIMutI	CAGTG	3 cut(s)	342, 371, 692
BveI	ACCTGC	1 cut(s)	1075
Cac8I	GCNNGC	1 cut(s)	1332
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	2 cut(s)	100, 2044
CfoI	GCGC	2 cut(s)	922, 1087
Cfr10I	RCCGGY	2 cut(s)	860, 2089
Cfr13I	GGNCC	9 cut(s)	43, 332, 668, 820, 1272, 1303, 1448, 1538, 1682
CseI	GACGC	1 cut(s)	1730
Csp6I	GTAC	8 cut(s)	233, 390, 735, 1057, 1341, 1427, 1698, 2108
CspAI	ACCGGT	1 cut(s)	2089
CviQI	GTAC	8 cut(s)	233, 390, 735, 1057, 1341, 1427, 1698, 2108
DdeI	CTNAG	5 cut(s)	34, 39, 114, 637, 1600
DpnI	GATC	6 cut(s)	240, 279, 402, 604, 1364, 1598
DpnII	GATC	6 cut(s)	238, 277, 400, 602, 1362, 1596
DraI	TTTAAA	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	1888
EarI	CTCTTC	1 cut(s)	1888
Ecl136II	GAGCTC	1 cut(s)	416
Eco105I	TACGTA	1 cut(s)	389
Eco130I	CCWWGG	6 cut(s)	17, 28, 561, 658, 742, 1038
Eco147I	AGGCCT	1 cut(s)	1005
Eco24I	GRGCYC	2 cut(s)	418, 2044
Eco47I	GGWCC	4 cut(s)	43, 1448, 1538, 1682
Eco53kI	GAGCTC	1 cut(s)	416
Eco72I	CACGTG	1 cut(s)	1625
Eco91I	GGTNACC	1 cut(s)	1479
EcoICRI	GAGCTC	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	1479
EcoRII	CCWGG	4 cut(s)	598, 605, 1997, 2036
EcoT14I	CCWWGG	6 cut(s)	17, 28, 561, 658, 742, 1038
EcoT38I	GRGCYC	2 cut(s)	418, 2044
ErhI	CCWWGG	6 cut(s)	17, 28, 561, 658, 742, 1038
Esp3I	CGTCTC	1 cut(s)	527
FaqI	GGGAC	3 cut(s)	951, 1701, 1733
FauI	CCCGC	3 cut(s)	448, 1456, 1995
FauNDI	CATATG	3 cut(s)	867, 1414, 1475
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	2 cut(s)	1107, 2166
FokI	GGATG	5 cut(s)	639, 1759, 1776, 1866, 1957
FriOI	GRGCYC	2 cut(s)	418, 2044
Fsp4HI	GCNGC	2 cut(s)	1107, 2166
FspBI	CTAG	2 cut(s)	1013, 1574
GlaI	GCGC	2 cut(s)	921, 1086
GluI	GCNGC	2 cut(s)	1107, 2166
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	6 cut(s)	333, 669, 821, 1005, 1274, 1305
HapII	CCGG	9 cut(s)	186, 861, 932, 1199, 1346, 1485, 1541, 1685, 2090
HgaI	GACGC	1 cut(s)	1730
HhaI	GCGC	2 cut(s)	922, 1087
Hin6I	GCGC	2 cut(s)	920, 1085
HinP1I	GCGC	2 cut(s)	920, 1085
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	9 cut(s)	97, 515, 691, 713, 780, 988, 1140, 1832, 2071
HpaII	CCGG	9 cut(s)	186, 861, 932, 1199, 1346, 1485, 1541, 1685, 2090
HphI	GGTGA	1 cut(s)	1115
Hpy166II	GTNNAC	4 cut(s)	180, 293, 375, 1580
Hpy188I	TCNGA	4 cut(s)	132, 551, 776, 855
Hpy8I	GTNNAC	4 cut(s)	180, 293, 375, 1580
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	779
HpyCH4III	ACNGT	2 cut(s)	899, 1824
HpyCH4IV	ACGT	6 cut(s)	121, 388, 618, 1034, 1624, 1815
HpyCH4V	TGCA	5 cut(s)	269, 842, 1412, 1622, 2165
HpyF10VI	GCNNNNNNNGC	8 cut(s)	305, 755, 1082, 1169, 1460, 1619, 1721, 1789
HpyF3I	CTNAG	5 cut(s)	34, 39, 114, 637, 1600
HpySE526I	ACGT	6 cut(s)	121, 388, 618, 1034, 1624, 1815
HspAI	GCGC	2 cut(s)	920, 1085
Kpn2I	TCCGGA	2 cut(s)	185, 1345
KpnI	GGTACC	1 cut(s)	738
Kzo9I	GATC	6 cut(s)	238, 277, 400, 602, 1362, 1596
LmnI	GCTCC	2 cut(s)	413, 1169
Lsp1109I	GCAGC	2 cut(s)	1093, 2177
LweI	GCATC	1 cut(s)	1609
MaeI	CTAG	2 cut(s)	1013, 1574
MaeII	ACGT	6 cut(s)	121, 388, 618, 1034, 1624, 1815
MaeIII	GTNAC	5 cut(s)	384, 462, 1479, 1768, 1811
MalI	GATC	6 cut(s)	240, 279, 402, 604, 1364, 1598
MboI	GATC	6 cut(s)	238, 277, 400, 602, 1362, 1596
MboII	GAAGA	3 cut(s)	1428, 1827, 1875
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	4 cut(s)	238, 277, 400, 602
MhlI	GDGCHC	4 cut(s)	328, 418, 897, 2044
MlyI	GAGTC	2 cut(s)	106, 1841
MmeI	TCCRAC	1 cut(s)	2104
MroI	TCCGGA	2 cut(s)	185, 1345
MroXI	GAANNNNTTC	2 cut(s)	618, 632
MslI	CAYNNNNRTG	1 cut(s)	1320
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	9 cut(s)	186, 861, 932, 1199, 1346, 1485, 1541, 1685, 2090
MspR9I	CCNGG	9 cut(s)	600, 607, 933, 1199, 1485, 1542, 1686, 1999, 2038
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	4 cut(s)	600, 607, 1999, 2038
MwoI	GCNNNNNNNGC	8 cut(s)	305, 755, 1082, 1169, 1460, 1619, 1721, 1789
NciI	CCSGG	5 cut(s)	933, 1199, 1485, 1542, 1686
NdeI	CATATG	3 cut(s)	867, 1414, 1475
NdeII	GATC	6 cut(s)	238, 277, 400, 602, 1362, 1596
NlaIV	GGNNCC	7 cut(s)	45, 240, 279, 604, 736, 1292, 1630
NspI	RCATGY	2 cut(s)	251, 1057
PagI	TCATGA	2 cut(s)	100, 2044
PceI	AGGCCT	1 cut(s)	1005
PciI	ACATGT	2 cut(s)	247, 1053
PcsI	WCGNNNNNNNCGW	2 cut(s)	946, 1937
PdmI	GAANNNNTTC	2 cut(s)	618, 632
PfeI	GAWTC	7 cut(s)	515, 691, 713, 780, 988, 1140, 2071
PflMI	CCANNNNNTGG	2 cut(s)	1300, 1764
PfoI	TCCNGGA	2 cut(s)	598, 1684
PinAI	ACCGGT	1 cut(s)	2089
PkrI	GCNGC	2 cut(s)	1108, 2167
PleI	GAGTC	2 cut(s)	105, 1840
PmaCI	CACGTG	1 cut(s)	1625
PmlI	CACGTG	1 cut(s)	1625
PpsI	GAGTC	2 cut(s)	105, 1840
Ppu21I	YACGTR	2 cut(s)	389, 1625
PpuMI	RGGWCCY	1 cut(s)	43
PscI	ACATGT	2 cut(s)	247, 1053
PshBI	ATTAAT	1 cut(s)	1896
Psp124BI	GAGCTC	1 cut(s)	418
Psp1406I	AACGTT	2 cut(s)	618, 1815
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	4 cut(s)	598, 605, 1997, 2036
PspCI	CACGTG	1 cut(s)	1625
PspEI	GGTNACC	1 cut(s)	1479
PspGI	CCWGG	4 cut(s)	598, 605, 1997, 2036
PspN4I	GGNNCC	7 cut(s)	45, 240, 279, 604, 736, 1292, 1630
PspPI	GGNCC	9 cut(s)	43, 332, 668, 820, 1272, 1303, 1448, 1538, 1682
PspPPI	RGGWCCY	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	4 cut(s)	238, 277, 400, 602
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	8 cut(s)	234, 391, 736, 1058, 1342, 1428, 1699, 2109
RsaNI	GTAC	8 cut(s)	233, 390, 735, 1057, 1341, 1427, 1698, 2108
RseI	CAYNNNNRTG	1 cut(s)	1320
SacI	GAGCTC	1 cut(s)	418
SatI	GCNGC	2 cut(s)	1107, 2166
Sau3AI	GATC	6 cut(s)	238, 277, 400, 602, 1362, 1596
Sau96I	GGNCC	9 cut(s)	43, 332, 668, 820, 1272, 1303, 1448, 1538, 1682
SchI	GAGTC	2 cut(s)	106, 1841
ScrFI	CCNGG	9 cut(s)	600, 607, 933, 1199, 1485, 1542, 1686, 1999, 2038
SduI	GDGCHC	4 cut(s)	328, 418, 897, 2044
SfaNI	GCATC	1 cut(s)	1609
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	4 cut(s)	43, 1448, 1538, 1682
SmiMI	CAYNNNNRTG	1 cut(s)	1320
SmlI	CTYRAG	1 cut(s)	1101
SmoI	CTYRAG	1 cut(s)	1101
SnaBI	TACGTA	1 cut(s)	389
SseBI	AGGCCT	1 cut(s)	1005
SsiI	CCGC	5 cut(s)	81, 455, 1463, 1695, 2002
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	2 cut(s)	1013, 1574
SstI	GAGCTC	1 cut(s)	418
StuI	AGGCCT	1 cut(s)	1005
StyD4I	CCNGG	9 cut(s)	598, 605, 931, 1197, 1483, 1540, 1684, 1997, 2036
StyI	CCWWGG	6 cut(s)	17, 28, 561, 658, 742, 1038
TaaI	ACNGT	2 cut(s)	899, 1824
TaiI	ACGT	6 cut(s)	124, 391, 621, 1037, 1627, 1818
TaqI	TCGA	6 cut(s)	93, 986, 1365, 1422, 1468, 2074
TaqII	GACCGA	1 cut(s)	1921
TatI	WGTACW	3 cut(s)	1056, 1426, 2107
TfiI	GAWTC	7 cut(s)	515, 691, 713, 780, 988, 1140, 2071
TscAI	CASTG	3 cut(s)	342, 371, 692
TseI	GCWGC	2 cut(s)	1106, 2165
TspDTI	ATGAA	9 cut(s)	188, 575, 980, 1069, 1132, 1304, 1547, 1934, 2061
TspGWI	ACGGA	1 cut(s)	1182
TspRI	CASTG	3 cut(s)	342, 371, 692
Van91I	CCANNNNNTGG	2 cut(s)	1300, 1764
VpaK11BI	GGWCC	4 cut(s)	43, 1448, 1538, 1682
VspI	ATTAAT	1 cut(s)	1896
XapI	RAATTY	2 cut(s)	217, 880
XceI	RCATGY	2 cut(s)	251, 1057
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1846, 1895
XmiI	GTMKAC	1 cut(s)	374
XmnI	GAANNNNTTC	2 cut(s)	618, 632
XspI	CTAG	2 cut(s)	1013, 1574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.