AT2G32180

function DUF861, cupin-3 (InterPro IPR008579), RmlC-like jelly roll fold (InterPro IPR014710)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008518
Physical Location & Seq
Reverse (-)
13672250 .. 13673256
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32180.2

Sequence Viewer

Length: 420 bp
ATGGCAAGTCTGATAATGACTACACCATTCCCAGGTTCTGTCACTACATGTAAGAAGACAAATAACCTGTCAGTTCAAAGAGCCTTTAGGGTGACTTGTATGCAGACAGAGAAACCATTAGAGGAGCTATACAATGTTAAAGTGGAACGGAAAGTTTCACAGAAACGGTTGGAGGAACTTGGGGTTTCGAGATGGTCAGTTTGGAAGACAGGGAAATGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTGGTTTACATTGAACAAGGAGAGGTTCGAGTTGTTCCCGAAGGAAGCAAGAGGTATATGCAGTTTTTAGCTGGAGATCTTGTTCGGTATCCGAAATGGTTGGAAGCTGATCTTTTCTTTAACGCTCCTTATATTGAGCGGTATTGTTTCAAGGCCTATGGTGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

139

Amino Acids

16.33

Weight (kDa)

8.87

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 57 - 129 2e-19 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 229
Acc36I ACCTGC 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 388
AciI CCGC 1 cut(s) 388
AclWI GGATC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 3 cut(s) 77, 263, 400
AjnI CCWGG 1 cut(s) 31
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 3 cut(s) 127, 320, 356
AluI AGCT 3 cut(s) 127, 320, 356
AlwI GGATC 1 cut(s) 252
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 1 cut(s) 402
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AsuHPI GGTGA 1 cut(s) 103
BbsI GAAGAC 2 cut(s) 62, 212
BccI CCATC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 33
BciVI GTATCC 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 229
BfuI GTATCC 1 cut(s) 348
BglII AGATCT 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
BpiI GAAGAC 2 cut(s) 62, 212
BpmI CTGGAG 1 cut(s) 342
BsaJI CCNNGG 2 cut(s) 31, 227
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 31, 227
BseLI CCNNNNNNNGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 32
BsnI GGCC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 244, 325, 358
Bsp19I CCATGG 1 cut(s) 227
BspACI CCGC 1 cut(s) 388
BspANI GGCC 1 cut(s) 404
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 31, 227
BssMI GATC 3 cut(s) 244, 325, 358
BssT1I CCWWGG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 227
BstKTI GATC 3 cut(s) 247, 328, 361
BstMBI GATC 3 cut(s) 244, 325, 358
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 31
BstV2I GAAGAC 2 cut(s) 62, 212
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 234
BstYI RGATCY 1 cut(s) 325
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 404
BtgI CCRYGG 1 cut(s) 227
BveI ACCTGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 38
CviAII CATG 2 cut(s) 48, 228
CviJI RGCY 5 cut(s) 83, 127, 320, 356, 404
CviKI_1 RGCY 5 cut(s) 83, 127, 320, 356, 404
DpnI GATC 3 cut(s) 246, 327, 360
DpnII GATC 3 cut(s) 244, 325, 358
Eco130I CCWWGG 1 cut(s) 227
Eco147I AGGCCT 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 2 cut(s) 51, 231
FaiI YATR 8 cut(s) 49, 101, 130, 229, 306, 308, 381, 408
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 2 cut(s) 47, 227
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 404
Hin1II CATG 2 cut(s) 51, 231
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 12, 342
Hpy188III TCNNGA 2 cut(s) 189, 287
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 103, 219, 310
Hsp92II CATG 2 cut(s) 51, 231
Kzo9I GATC 3 cut(s) 244, 325, 358
LmnI GCTCC 2 cut(s) 124, 379
LpnPI CCDG 6 cut(s) 18, 45, 80, 195, 224, 306
MaeIII GTNAC 2 cut(s) 40, 91
MalI GATC 3 cut(s) 246, 327, 360
MbiI CCGCTC 1 cut(s) 388
MboI GATC 3 cut(s) 244, 325, 358
MboII GAAGA 2 cut(s) 67, 217
MflI RGATCY 1 cut(s) 325
MluCI AATT 1 cut(s) 221
MmeI TCCRAC 2 cut(s) 150, 330
MnlI CCTC 4 cut(s) 115, 166, 265, 294
MseI TTAA 2 cut(s) 138, 369
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
NcoI CCATGG 1 cut(s) 227
NdeII GATC 3 cut(s) 244, 325, 358
NlaIII CATG 2 cut(s) 51, 231
NmuCI GTSAC 2 cut(s) 40, 91
NspI RCATGY 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 229
PceI AGGCCT 1 cut(s) 404
PciI ACATGT 1 cut(s) 47
PscI ACATGT 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 1 cut(s) 325
SaqAI TTAA 2 cut(s) 138, 369
Sau3AI GATC 3 cut(s) 244, 325, 358
ScrFI CCNGG 1 cut(s) 33
SetI ASST 8 cut(s) 37, 69, 129, 243, 276, 305, 322, 358
Sse9I AATT 1 cut(s) 221
SseBI AGGCCT 1 cut(s) 404
SsiI CCGC 1 cut(s) 388
StuI AGGCCT 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 31
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 188, 277
TasI AATT 1 cut(s) 221
Tru1I TTAA 2 cut(s) 138, 369
Tru9I TTAA 2 cut(s) 138, 369
TseFI GTSAC 2 cut(s) 40, 91
Tsp45I GTSAC 2 cut(s) 40, 91
TspGWI ACGGA 1 cut(s) 163
XceI RCATGY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.