FvH4_6g42600

Protein of unknown function (DUF861)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008518
Physical Location & Seq
Reverse (-)
33161536 .. 33162822
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42600.t1

Sequence Viewer

Length: 438 bp
ATGGCGAGTGTGATTATGGCCACAACCTTGGGCTCATTCTCAGTAAACAGAAGCAGTAGAGATTGCAGCAAATGGAGTAGTACCAATGGGAAACGCAGTGGTCTAACTGTGAAGGCAATGCGGGTGGAGAAAAGTCTGGAGGAATTGTACGAAGTGAGAGTGGAACGCAAAGTTTCGCCTGAACGAGTTGCAGAGCTCGGAGTTTCAAGGTGGTCAATGTGGAAGACCGGCAAGGGCAAGTTGCCTTGGGATTGGCAGGTGGACCAGTTGGTTTACATTGAGGAAGGAGAGGTGAGAGTTGTGCCGGAAGGAAGTAAGCAGTTCATGCGATTTGTGGCTGGAGATCTTGTTCGTTACCCTAAGTGGTTTGAAGCTGACCTATGGTTCAATGGTCCATACCAAGAGCGTTACAGTTTCAGAGCTTATGGTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_3

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

9.01

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_3 PF05899 64 - 129 9.1e-19 EutQ-like cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 247
Acc36I ACCTGC 1 cut(s) 247
AciI CCGC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 18
AfaI GTAC 2 cut(s) 82, 149
AgsI TTSAA 3 cut(s) 207, 371, 388
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 196, 374, 422
AluI AGCT 3 cut(s) 196, 374, 422
Alw21I GWGCWC 1 cut(s) 198
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 262, 392
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 2 cut(s) 262, 392
BalI TGGCCA 1 cut(s) 20
BanII GRGCYC 2 cut(s) 35, 198
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 247
BglII AGATCT 1 cut(s) 343
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme18I GGWCC 2 cut(s) 262, 392
BmgT120I GGNCC 2 cut(s) 262, 392
BpiI GAAGAC 1 cut(s) 230
BpmI CTGGAG 2 cut(s) 158, 360
BsaJI CCNNGG 2 cut(s) 27, 245
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 333, 363
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 27, 245
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 228, 305
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 35, 198
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 1 cut(s) 121
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 27, 245
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 2 cut(s) 27, 245
Bst4CI ACNGT 2 cut(s) 109, 413
BstAPI GCANNNNNTGC 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 40, 360
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 262, 392
Csp6I GTAC 2 cut(s) 81, 148
CspCI CAANNNNNGTGG 2 cut(s) 105, 140
CviAII CATG 1 cut(s) 325
CviJI RGCY 6 cut(s) 20, 33, 196, 338, 374, 422
CviKI_1 RGCY 6 cut(s) 20, 33, 196, 338, 374, 422
CviQI GTAC 2 cut(s) 81, 148
DdeI CTNAG 2 cut(s) 40, 360
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 27, 245
Eco24I GRGCYC 2 cut(s) 35, 198
Eco47I GGWCC 2 cut(s) 262, 392
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 27, 245
EcoT38I GRGCYC 2 cut(s) 35, 198
ErhI CCWWGG 2 cut(s) 27, 245
FaeI CATG 1 cut(s) 328
FaiI YATR 5 cut(s) 17, 326, 382, 397, 426
FatI CATG 1 cut(s) 324
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 67
FriOI GRGCYC 2 cut(s) 35, 198
Fsp4HI GCNGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 67
GsuI CTGGAG 2 cut(s) 158, 360
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 228, 305
Hin1II CATG 1 cut(s) 328
HpaII CCGG 2 cut(s) 228, 305
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 3 cut(s) 46, 262, 274
Hpy188I TCNGA 2 cut(s) 200, 419
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 3 cut(s) 46, 262, 274
HpyAV CCTTC 3 cut(s) 106, 278, 302
HpyCH4III ACNGT 2 cut(s) 109, 413
HpyCH4V TGCA 2 cut(s) 66, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 2 cut(s) 40, 360
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 343
LpnPI CCDG 7 cut(s) 122, 192, 241, 242, 278, 318, 324
Lsp1109I GCAGC 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 353, 407
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 35, 198
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 20
MnlI CCTC 3 cut(s) 133, 274, 283
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 436
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 2 cut(s) 228, 305
MwoI GCNNNNNNNGC 1 cut(s) 325
NdeII GATC 1 cut(s) 343
NlaIII CATG 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 198
PspPI GGNCC 2 cut(s) 262, 392
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 82, 149
RsaNI GTAC 2 cut(s) 81, 148
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 2 cut(s) 262, 392
SduI GDGCHC 2 cut(s) 35, 198
SetI ASST 8 cut(s) 29, 198, 212, 261, 294, 376, 381, 424
SinI GGWCC 2 cut(s) 262, 392
Sse9I AATT 1 cut(s) 143
SsiI CCGC 1 cut(s) 121
SstI GAGCTC 1 cut(s) 198
StyI CCWWGG 2 cut(s) 27, 245
TaaI ACNGT 2 cut(s) 109, 413
TasI AATT 1 cut(s) 143
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 1 cut(s) 103
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 313
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 262, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.