Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008518

Physical Location & Seq

Genomic Coordinates Forward (+)

60010922 .. 60012116

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0469400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGACCAAAGTTCCGAACCCCAGCCTCTTCCTCCGCGTCCCAGCTCGTCTCTGCCGGGACCAGAGTCACTGCCGATCAACTTCTCCGAGTTAGAGCGCGACCAAAAACCGATTAGAAGCGGAGCCGGAGGCACGGTGTACAAAGCCGTTCACAAACCCACCGGCCGGCTCTACGCGGTGAAAGTGATCGACGGCATGGACTTCCGTGACTACTCGGTCCCGCGTCAGATCATCCAAGAGTTCCAAGTCCTCCGCGACGTTGCTAACCCTAACATCGTCAAGTGCTACGACATGTTCAACCACAACGACGATATCCACGTCCTCCTAGAATACATGGACGGAGGTTCATTGAAAGGCAAGTACATCAACAACGAGAAAGCTCTCTCCGACTTGGCTAGGCAGATCCTCACCGGCTTGACTTTTCTCCACGGACGGCACGTAGCCCACATGGATATCAAGCCCTCGAATCTCTTGATCAACTCCCGGCATGAAGTCAAGATCGCAGATTTCGTTGGGAGAGTTTTGGCCAAGACTATGGATCCGTGTAATTCTTCTGTGGGGAACATAGCATATATGTGCCCGGAGAGAATCAATACCGATCTAAATCACGGAAAGTTTGACGCCTGCACCGGCGATATATGGAGCGTCGGAGTCAGCATCTTGGAGTTTTACATAGGGCGGTATCCCTTCTCTGCGCACAAGGGAGATTGGAGCTTGATGTGGGGCATATGTATGTCTCAGCCTCCTGAAGCTCCTATATATGCGTCAAGAGAGTTGAGGCATTTCATTGCTTGCTGTTTGCAGAGAGAGCCGAAAAAGAGACTGTCGGCGGCGCAGTTGTTGCAGCACCCATTTGTCTCCGGCAACAGCAGCGGACAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_3

Protein Analysis

294

Amino Acids

32.94

Weight (kDa)

8.12

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	36 - 282	5.4e-29	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	37 - 286	1.1e-55	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27402 AT2G27402 AT2G32180 AT2G32180 AT2G32650 AT2G32650
fragaria_vesca	FvH4_6g42600
malus_domestica	MD09G1112200.v1.1 MD17G1102300.v1.1
prunus_persica	Prupe.3G212500_v2.0.a1
pyrus_communis	pycom09g03670
rosa_chinensis	RchiOBHm_Chr2g0158451
rosa_laevigata	RLG00000021089
rosa_multiflora	Rmu_sc0004855.1_g000004
rosa_roxburghii	Rroxscaffold_2G00091360
rosa_rugosa	Rorug02G0469300 Rorug02G0469400 Rorug02G0469500
rosa_samantha	Rh2AG535000 Rh2BG548300 Rh2CG518700 Rh2DG557900
rosa_wichuraiana	Rw2G044310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
Acc16I	TGCGCA	1 cut(s)	696
AccII	CGCG	5 cut(s)	37, 99, 176, 223, 255
AciI	CCGC	8 cut(s)	35, 120, 176, 221, 253, 679, 830, 873
AclWI	GGATC	3 cut(s)	397, 533, 546
AcoI	YGGCCR	2 cut(s)	163, 525
AcuI	CTGAAG	1 cut(s)	768
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	2 cut(s)	140, 362
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	298, 352
AjiI	CACGTC	1 cut(s)	319
AluBI	AGCT	4 cut(s)	45, 380, 714, 752
AluI	AGCT	4 cut(s)	45, 380, 714, 752
Alw26I	GTCTC	4 cut(s)	54, 741, 814, 862
AlwI	GGATC	3 cut(s)	397, 533, 546
AoxI	GGCC	2 cut(s)	163, 525
ApeKI	GCWGC	2 cut(s)	844, 870
AspLEI	GCGC	3 cut(s)	99, 697, 835
AspS9I	GGNCC	3 cut(s)	4, 59, 217
AsuC2I	CCSGG	3 cut(s)	57, 484, 581
AsuHPI	GGTGA	2 cut(s)	190, 400
AvaII	GGWCC	3 cut(s)	4, 59, 217
BaeGI	GKGCMC	1 cut(s)	581
BalI	TGGCCA	1 cut(s)	527
BamHI	GGATCC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	856
BceAI	ACGGC	3 cut(s)	131, 208, 449
BciVI	GTATCC	1 cut(s)	693
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	3 cut(s)	57, 484, 581
BcoDI	GTCTC	4 cut(s)	54, 741, 814, 862
BfaI	CTAG	2 cut(s)	326, 396
BfuI	GTATCC	1 cut(s)	693
BisI	GCNGC	3 cut(s)	831, 845, 871
BlsI	GCNGC	3 cut(s)	832, 846, 872
Bme1390I	CCNGG	3 cut(s)	57, 484, 581
Bme18I	GGWCC	3 cut(s)	4, 59, 217
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	3 cut(s)	4, 59, 217
BmiI	GGNNCC	4 cut(s)	60, 124, 219, 540
BmrFI	CCNGG	3 cut(s)	57, 484, 581
BmsI	GCATC	1 cut(s)	666
BoxI	GACNNNNGTC	1 cut(s)	64
BpuMI	CCSGG	3 cut(s)	57, 484, 581
BsaAI	YACGTR	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	603
BsaHI	GRCGYC	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse118I	RCCGGY	4 cut(s)	161, 165, 410, 629
Bse3DI	GCAATG	1 cut(s)	786
Bse8I	GATNNNNATC	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	1 cut(s)	752
BseSI	GKGCMC	1 cut(s)	581
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	856
BseYI	CCCAGC	2 cut(s)	21, 41
BsgI	GTGCAG	1 cut(s)	610
Bsh1236I	CGCG	5 cut(s)	37, 99, 176, 223, 255
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	165, 527
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	9 cut(s)	56, 126, 162, 166, 411, 484, 581, 630, 861
BslFI	GGGAC	3 cut(s)	24, 72, 203
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	4 cut(s)	54, 741, 814, 862
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	3 cut(s)	24, 72, 203
BsnI	GGCC	2 cut(s)	165, 527
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	8 cut(s)	75, 186, 228, 402, 474, 498, 538, 598
BspACI	CCGC	8 cut(s)	35, 120, 176, 221, 253, 679, 830, 873
BspANI	GGCC	2 cut(s)	165, 527
BspCNI	CTCAG	1 cut(s)	751
BspFNI	CGCG	5 cut(s)	37, 99, 176, 223, 255
BspLI	GGNNCC	4 cut(s)	60, 124, 219, 540
BspPI	GGATC	3 cut(s)	397, 533, 546
BsrDI	GCAATG	1 cut(s)	786
BsrFI	RCCGGY	4 cut(s)	161, 165, 410, 629
BsrGI	TGTACA	1 cut(s)	138
BssAI	RCCGGY	4 cut(s)	161, 165, 410, 629
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	8 cut(s)	75, 186, 228, 402, 474, 498, 538, 598
BssNI	GRCGYC	1 cut(s)	621
Bst4CI	ACNGT	2 cut(s)	136, 825
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	621
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstAUI	TGTACA	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	3 cut(s)	167, 625, 793
BstDEI	CTNAG	1 cut(s)	738
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	5 cut(s)	37, 99, 176, 223, 255
BstHHI	GCGC	3 cut(s)	99, 697, 835
BstKTI	GATC	8 cut(s)	78, 189, 231, 405, 477, 501, 541, 601
BstMAI	GTCTC	4 cut(s)	54, 741, 814, 862
BstMBI	GATC	8 cut(s)	75, 186, 228, 402, 474, 498, 538, 598
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	808, 841, 870
BstNSI	RCATGY	1 cut(s)	295
BstPAI	GACNNNNGTC	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	55, 482, 579
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	5 cut(s)	37, 99, 176, 223, 255
BstV1I	GCAGC	1 cut(s)	856
BstX2I	RGATCY	2 cut(s)	402, 538
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	2 cut(s)	402, 538
BstZI	CGGCCG	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	165, 527
BtgI	CCRYGG	1 cut(s)	427
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	231
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	3 cut(s)	167, 625, 793
CfoI	GCGC	3 cut(s)	99, 697, 835
Cfr10I	RCCGGY	4 cut(s)	161, 165, 410, 629
Cfr13I	GGNCC	3 cut(s)	4, 59, 217
CseI	GACGC	5 cut(s)	26, 212, 629, 634, 753
Csp6I	GTAC	2 cut(s)	139, 361
CviAII	CATG	5 cut(s)	196, 292, 334, 448, 488
CviQI	GTAC	2 cut(s)	139, 361
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	8 cut(s)	77, 188, 230, 404, 476, 500, 540, 600
DpnII	GATC	8 cut(s)	75, 186, 228, 402, 474, 498, 538, 598
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	2 cut(s)	163, 525
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	163
Eco32I	GATATC	2 cut(s)	313, 454
Eco47I	GGWCC	3 cut(s)	4, 59, 217
Eco52I	CGGCCG	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	768
EcoRV	GATATC	2 cut(s)	313, 454
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	5 cut(s)	199, 295, 337, 451, 491
FaqI	GGGAC	3 cut(s)	24, 72, 203
FatI	CATG	5 cut(s)	195, 291, 333, 447, 487
FauI	CCCGC	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	728
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	3 cut(s)	831, 845, 871
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	831, 845, 871
FspBI	CTAG	2 cut(s)	326, 396
FspI	TGCGCA	1 cut(s)	696
GlaI	GCGC	3 cut(s)	98, 696, 834
GluI	GCNGC	3 cut(s)	831, 845, 871
GsaI	CCCAGC	2 cut(s)	25, 45
HaeIII	GGCC	2 cut(s)	165, 527
HapII	CCGG	9 cut(s)	56, 126, 162, 166, 411, 484, 581, 630, 861
HgaI	GACGC	5 cut(s)	26, 212, 629, 634, 753
HhaI	GCGC	3 cut(s)	99, 697, 835
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	5 cut(s)	199, 295, 337, 451, 491
Hin6I	GCGC	3 cut(s)	97, 695, 833
HinP1I	GCGC	3 cut(s)	97, 695, 833
HinfI	GANTC	4 cut(s)	65, 466, 588, 651
HpaII	CCGG	9 cut(s)	56, 126, 162, 166, 411, 484, 581, 630, 861
HphI	GGTGA	2 cut(s)	190, 400
Hpy166II	GTNNAC	2 cut(s)	139, 151
Hpy188I	TCNGA	5 cut(s)	16, 88, 228, 388, 650
Hpy188III	TCNNGA	4 cut(s)	472, 496, 746, 768
Hpy8I	GTNNAC	2 cut(s)	139, 151
Hpy99I	CGWCG	4 cut(s)	194, 260, 311, 650
HpyAV	CCTTC	1 cut(s)	697
HpyCH4III	ACNGT	2 cut(s)	136, 825
HpyCH4IV	ACGT	3 cut(s)	258, 318, 438
HpyCH4V	TGCA	3 cut(s)	627, 802, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	808, 841, 870
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	3 cut(s)	258, 318, 438
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	5 cut(s)	199, 295, 337, 451, 491
HspAI	GCGC	3 cut(s)	97, 695, 833
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	8 cut(s)	75, 186, 228, 402, 474, 498, 538, 598
LmnI	GCTCC	4 cut(s)	122, 642, 711, 757
Lsp1109I	GCAGC	1 cut(s)	856
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	2 cut(s)	326, 396
MaeII	ACGT	3 cut(s)	258, 318, 438
MaeIII	GTNAC	2 cut(s)	66, 206
MalI	GATC	8 cut(s)	77, 188, 230, 404, 476, 500, 540, 600
MboI	GATC	8 cut(s)	75, 186, 228, 402, 474, 498, 538, 598
MboII	GAAGA	2 cut(s)	20, 543
MflI	RGATCY	2 cut(s)	402, 538
MhlI	GDGCHC	1 cut(s)	581
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	1 cut(s)	547
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	2 cut(s)	74, 660
MmeI	TCCRAC	2 cut(s)	411, 628
Mox20I	TGGCCA	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	527
MslI	CAYNNNNRTG	2 cut(s)	574, 731
Msp20I	TGGCCA	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	873
MspI	CCGG	9 cut(s)	56, 126, 162, 166, 411, 484, 581, 630, 861
MspR9I	CCNGG	3 cut(s)	57, 484, 581
MvnI	CGCG	5 cut(s)	37, 99, 176, 223, 255
MwoI	GCNNNNNNNGC	3 cut(s)	808, 841, 870
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	3 cut(s)	57, 484, 581
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	8 cut(s)	75, 186, 228, 402, 474, 498, 538, 598
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	5 cut(s)	199, 295, 337, 451, 491
NlaIV	GGNNCC	4 cut(s)	60, 124, 219, 540
NmuCI	GTSAC	2 cut(s)	66, 206
NsbI	TGCGCA	1 cut(s)	696
NspI	RCATGY	1 cut(s)	295
PciI	ACATGT	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 435, 507
PdiI	GCCGGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	466, 588
PkrI	GCNGC	3 cut(s)	832, 846, 872
PleI	GAGTC	2 cut(s)	73, 659
PpsI	GAGTC	2 cut(s)	73, 659
Ppu21I	YACGTR	1 cut(s)	439
PscI	ACATGT	1 cut(s)	291
PshAI	GACNNNNGTC	1 cut(s)	64
PspFI	CCCAGC	2 cut(s)	21, 41
PspN4I	GGNNCC	4 cut(s)	60, 124, 219, 540
PspPI	GGNCC	3 cut(s)	4, 59, 217
PsuI	RGATCY	2 cut(s)	402, 538
RsaI	GTAC	2 cut(s)	140, 362
RsaNI	GTAC	2 cut(s)	139, 361
RseI	CAYNNNNRTG	2 cut(s)	574, 731
SatI	GCNGC	3 cut(s)	831, 845, 871
Sau3AI	GATC	8 cut(s)	75, 186, 228, 402, 474, 498, 538, 598
Sau96I	GGNCC	3 cut(s)	4, 59, 217
SchI	GAGTC	2 cut(s)	74, 660
ScrFI	CCNGG	3 cut(s)	57, 484, 581
SduI	GDGCHC	1 cut(s)	581
SetI	ASST	8 cut(s)	47, 261, 321, 346, 382, 441, 716, 754
SfaNI	GCATC	1 cut(s)	666
SgrAI	CRCCGGYG	1 cut(s)	629
SinI	GGWCC	3 cut(s)	4, 59, 217
SmiMI	CAYNNNNRTG	2 cut(s)	574, 731
Sse9I	AATT	1 cut(s)	547
SsiI	CCGC	8 cut(s)	35, 120, 176, 221, 253, 679, 830, 873
SspMI	CTAG	2 cut(s)	326, 396
StyD4I	CCNGG	3 cut(s)	55, 482, 579
TaaI	ACNGT	2 cut(s)	136, 825
TaiI	ACGT	3 cut(s)	261, 321, 441
TaqI	TCGA	2 cut(s)	189, 464
TaqII	GACCGA	1 cut(s)	205
TasI	AATT	1 cut(s)	547
TatI	WGTACW	2 cut(s)	138, 360
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	2 cut(s)	466, 588
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	2 cut(s)	66, 206
TseI	GCWGC	2 cut(s)	844, 870
Tsp45I	GTSAC	2 cut(s)	66, 206
TspDTI	ATGAA	3 cut(s)	336, 504, 775
TspGWI	ACGGA	5 cut(s)	194, 354, 444, 531, 624
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	3 cut(s)	4, 59, 217
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	2 cut(s)	326, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.