Rorug02G0469300

Protein of unknown function (DUF861)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
60007887 .. 60008063
177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0469300.1

Sequence Viewer

Length: 177 bp
ATGTCCTTCCGGCATGTTCCTCTTGAAGCCAACTTTGTGGCCGATGTAGTGACGTCTCTTGGCCATGCCTCTTCGAACCCCTATATCTTGCGAAAGAAGTTGCTTCTTTCAGCCTTCAATTTAGATAAGTTCAGGCTGTTCAGCGTAGGTTTTTTTTTTTTTTTTTTTGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

6.68

Weight (kDa)

9.52

Isoelectric Point (pI)

23.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 56
AcoI YGGCCR 2 cut(s) 39, 61
AcyI GRCGYC 1 cut(s) 53
AgsI TTSAA 3 cut(s) 26, 118, 170
Alw26I GTCTC 1 cut(s) 60
AoxI GGCC 2 cut(s) 39, 61
AsuII TTCGAA 1 cut(s) 74
BalI TGGCCA 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 53
BshFI GGCC 2 cut(s) 41, 63
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsnI GGCC 2 cut(s) 41, 63
Bsp119I TTCGAA 1 cut(s) 74
BspANI GGCC 2 cut(s) 41, 63
BspT104I TTCGAA 1 cut(s) 74
BssNI GRCGYC 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 2 cut(s) 41, 63
CviAII CATG 2 cut(s) 14, 65
CviJI RGCY 5 cut(s) 29, 41, 63, 113, 136
CviKI_1 RGCY 5 cut(s) 29, 41, 63, 113, 136
EaeI YGGCCR 2 cut(s) 39, 61
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 2 cut(s) 17, 68
FaiI YATR 3 cut(s) 15, 66, 84
FatI CATG 2 cut(s) 13, 64
HaeIII GGCC 2 cut(s) 41, 63
HapII CCGG 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 2 cut(s) 17, 68
HpaII CCGG 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 16, 124, 164
HpyCH4IV ACGT 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 17, 68
LpnPI CCDG 2 cut(s) 23, 118
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 49
MboII GAAGA 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 1 cut(s) 118
MluNI TGGCCA 1 cut(s) 63
MnlI CCTC 2 cut(s) 30, 79
Mox20I TGGCCA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 63
Msp20I TGGCCA 1 cut(s) 63
MspI CCGG 1 cut(s) 10
NlaIII CATG 2 cut(s) 17, 68
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 17
NspV TTCGAA 1 cut(s) 74
SetI ASST 3 cut(s) 56, 151, 175
SfuI TTCGAA 1 cut(s) 74
SgeI CNNG 7 cut(s) 22, 26, 35, 71, 77, 100, 145
Sse9I AATT 1 cut(s) 118
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 74
TasI AATT 1 cut(s) 118
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
XceI RCATGY 1 cut(s) 17
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.