AT2G33400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011906
Physical Location & Seq
Reverse (-)
14152706 .. 14154578
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33400.1

Sequence Viewer

Length: 819 bp
ATGGGATGTTTTATGGGTTGTTTCGGTCTCTCTTCCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAGGAGTGAGGTAGGGGAGGAGGAGGAGAAGAAGAAGGTGACTAAGAAGACGAGGAAGAGAGTCAGATTTGACTTGAATGTACAAACCTATGAACCTATTGTACCTTCAAGATATGAGAATGCTTGCAGTGATGATGAAGAGGGGAAAGGAGGAAGAAGCAAGGGATCTTCGGCTATAGATAAGAAACCAGAGGATCTAAGCAGTAGATCTGTGTATCCTTCAAACTATAGATACCACAACTGTGTGGATAGTTTTGAGGATGAAGATGATGAAATGGGTTATGGAGAGAGTGATTTGGAAGATGAAGACTATTACACCGATAATGAAAACGACTATGAAGATGATGCTGATGATGAAGATGAAGAAGAAGAAGAAGAGAATGAGCAGGACGTGGCTCCTCTTTTGAATCCAGTGGAGAATCTTGCTCAGTGGAAAGCGGTTAAAGCAAGGCCAGTGAAAGTTAAACGGGTAATGAAAGAGAATGTTGAAGAGGATATGGATGATCAAGCAAAACCACTACTGAAGGAGATAATCGTTAATACTAGCCTTTCCAATTGGTTGGCCTCACCAAAGAGTCTTCATGCGAATGGTTCATCGAAGAGATCCCCAATTGTGGATATCACCAACATGGAGAACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.13

Weight (kDa)

4.61

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33400
fragaria_vesca FvH4_4g04330 FvH4_4g04330
malus_domestica MD13G1219300.v1.1 MD16G1224700.v1.1
prunus_persica Prupe.1G046000_v2.0.a1
pyrus_communis pycom13g19420 pycom16g18800
rosa_chinensis RchiOBHm_Chr4g0394781
rosa_laevigata RLG00000009661
rosa_multiflora Rmu_sc0005356.1_g000002
rosa_roxburghii Rroxscaffold_5G00339820
rosa_rugosa Rorug03G0361500.1
rosa_samantha Rh3BG335900 Rh4AG055100 Rh4BG053000 Rh4CG059900 Rh4DG051600
rosa_wichuraiana Rw4G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 104, 614
AclWI GGATC 5 cut(s) 61, 113, 349, 378, 774
AcsI RAATTY 2 cut(s) 52, 166
AcuI CTGAAG 2 cut(s) 99, 719
AfaI GTAC 3 cut(s) 136, 258, 279
AfiI CCNNNNNNNGG 1 cut(s) 790
AgsI TTSAA 5 cut(s) 253, 285, 399, 583, 665
AjiI CACGTC 1 cut(s) 568
AleI CACNNNNGTG 1 cut(s) 417
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 5 cut(s) 61, 113, 349, 378, 774
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 2 cut(s) 626, 738
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 52, 166
AsuHPI GGTGA 3 cut(s) 226, 735, 790
AsuII TTCGAA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 75
AxyI CCTNAGG 1 cut(s) 176
BbsI GAAGAC 3 cut(s) 230, 489, 746
BbvI GCAGC 1 cut(s) 93
BciVI GTATCC 1 cut(s) 402
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 3 cut(s) 91, 351, 403
BfuI GTATCC 1 cut(s) 402
BglII AGATCT 2 cut(s) 159, 383
BisI GCNGC 2 cut(s) 104, 107
BlsI GCNGC 2 cut(s) 105, 108
BmcAI AGTACT 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 75
BmgBI CACGTC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 573
BmsI GCATC 1 cut(s) 511
BpiI GAAGAC 3 cut(s) 230, 489, 746
Bpu14I TTCGAA 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 32
BsaXI ACNNNNNCTCC 1 cut(s) 800
Bsc4I CCNNNNNNNGG 1 cut(s) 790
Bse1I ACTGG 2 cut(s) 587, 629
Bse21I CCTNAGG 1 cut(s) 176
BseGI GGATG 3 cut(s) 11, 442, 682
BseLI CCNNNNNNNGG 1 cut(s) 790
BseMII CTCAG 2 cut(s) 190, 617
BseNI ACTGG 2 cut(s) 587, 629
BseRI GAGGAG 4 cut(s) 209, 212, 215, 564
BseXI GCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 628, 740
BsiHKCI CYCGRG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 790
BsmAI GTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 2 cut(s) 628, 740
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 256
Bsp143I GATC 9 cut(s) 66, 79, 118, 159, 341, 370, 383, 679, 779
BspACI CCGC 2 cut(s) 104, 614
BspANI GGCC 2 cut(s) 628, 740
BspCNI CTCAG 2 cut(s) 189, 616
BspLI GGNNCC 1 cut(s) 573
BspPI GGATC 5 cut(s) 61, 113, 349, 378, 774
BspT104I TTCGAA 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 256
BsrI ACTGG 2 cut(s) 587, 629
BssMI GATC 9 cut(s) 66, 79, 118, 159, 341, 370, 383, 679, 779
Bst4CI ACNGT 2 cut(s) 139, 419
Bst6I CTCTTC 6 cut(s) 37, 227, 309, 546, 660, 770
BstAUI TGTACA 1 cut(s) 256
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 4 cut(s) 176, 219, 374, 603
BstF5I GGATG 3 cut(s) 11, 442, 682
BstKTI GATC 9 cut(s) 69, 82, 121, 162, 344, 373, 386, 682, 782
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 9 cut(s) 66, 79, 118, 159, 341, 370, 383, 679, 779
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstSFI CTRYAG 3 cut(s) 91, 351, 403
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 3 cut(s) 230, 489, 746
BstX2I RGATCY 7 cut(s) 66, 118, 159, 341, 370, 383, 779
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 7 cut(s) 66, 118, 159, 341, 370, 383, 779
Bsu36I CCTNAGG 1 cut(s) 176
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 2 cut(s) 628, 740
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 3 cut(s) 11, 442, 682
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 4 cut(s) 310, 594, 611, 636
Cac8I GCNNGC 1 cut(s) 301
Csp6I GTAC 3 cut(s) 135, 257, 278
CviAII CATG 2 cut(s) 758, 805
CviJI RGCY 7 cut(s) 96, 103, 350, 572, 628, 723, 740
CviKI_1 RGCY 7 cut(s) 96, 103, 350, 572, 628, 723, 740
CviQI GTAC 3 cut(s) 135, 257, 278
DdeI CTNAG 4 cut(s) 176, 219, 374, 603
DpnI GATC 9 cut(s) 68, 81, 120, 161, 343, 372, 385, 681, 781
DpnII GATC 9 cut(s) 66, 79, 118, 159, 341, 370, 383, 679, 779
Eam1104I CTCTTC 6 cut(s) 37, 227, 309, 546, 660, 770
EarI CTCTTC 6 cut(s) 37, 227, 309, 546, 660, 770
Eco31I GGTCTC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 796
Eco57I CTGAAG 2 cut(s) 99, 719
Eco81I CCTNAGG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 75
EcoRV GATATC 1 cut(s) 796
FaeI CATG 2 cut(s) 761, 808
FatI CATG 2 cut(s) 757, 804
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 2 cut(s) 104, 107
FokI GGATG 3 cut(s) 18, 449, 689
Fsp4HI GCNGC 2 cut(s) 104, 107
FspBI CTAG 1 cut(s) 720
GluI GCNGC 2 cut(s) 104, 107
HaeIII GGCC 2 cut(s) 628, 740
Hin1II CATG 2 cut(s) 761, 808
HinfI GANTC 5 cut(s) 87, 237, 583, 595, 751
HphI GGTGA 3 cut(s) 226, 735, 790
Hpy188I TCNGA 4 cut(s) 118, 123, 145, 242
Hpy188III TCNNGA 3 cut(s) 77, 178, 285
HpyAV CCTTC 5 cut(s) 80, 205, 291, 405, 694
HpyCH4III ACNGT 2 cut(s) 139, 419
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 4 cut(s) 176, 219, 374, 603
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 2 cut(s) 761, 808
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 9 cut(s) 66, 79, 118, 159, 341, 370, 383, 679, 779
LmnI GCTCC 1 cut(s) 577
LpnPI CCDG 7 cut(s) 163, 165, 378, 548, 600, 642, 799
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 511
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 214
MalI GATC 9 cut(s) 68, 81, 120, 161, 343, 372, 385, 681, 781
MboI GATC 9 cut(s) 66, 79, 118, 159, 341, 370, 383, 679, 779
MfeI CAATTG 2 cut(s) 730, 786
MflI RGATCY 7 cut(s) 66, 118, 159, 341, 370, 383, 779
MluCI AATT 4 cut(s) 52, 166, 730, 786
MlyI GAGTC 2 cut(s) 246, 760
MmeI TCCRAC 2 cut(s) 60, 146
MseI TTAA 3 cut(s) 618, 639, 714
MslI CAYNNNNRTG 3 cut(s) 417, 762, 803
MspA1I CMGCKG 1 cut(s) 106
MunI CAATTG 2 cut(s) 730, 786
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 620
NdeII GATC 9 cut(s) 66, 79, 118, 159, 341, 370, 383, 679, 779
NlaIII CATG 2 cut(s) 761, 808
NlaIV GGNNCC 1 cut(s) 573
NmuCI GTSAC 1 cut(s) 214
NspV TTCGAA 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 417
PaeR7I CTCGAG 1 cut(s) 75
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 3 cut(s) 87, 583, 595
PkrI GCNGC 2 cut(s) 105, 108
PleI GAGTC 2 cut(s) 245, 759
PpsI GAGTC 2 cut(s) 245, 759
PspN4I GGNNCC 1 cut(s) 573
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
PsuI RGATCY 7 cut(s) 66, 118, 159, 341, 370, 383, 779
RsaI GTAC 3 cut(s) 136, 258, 279
RsaNI GTAC 3 cut(s) 135, 257, 278
RseI CAYNNNNRTG 3 cut(s) 417, 762, 803
SaqAI TTAA 3 cut(s) 618, 639, 714
SatI GCNGC 2 cut(s) 104, 107
Sau3AI GATC 9 cut(s) 66, 79, 118, 159, 341, 370, 383, 679, 779
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 2 cut(s) 246, 760
SetI ASST 9 cut(s) 98, 177, 189, 216, 266, 274, 283, 570, 818
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 3 cut(s) 91, 351, 403
Sfr274I CTCGAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 3 cut(s) 417, 762, 803
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 4 cut(s) 52, 166, 730, 786
SsiI CCGC 2 cut(s) 104, 614
SspMI CTAG 1 cut(s) 720
TaaI ACNGT 2 cut(s) 139, 419
TaiI ACGT 1 cut(s) 570
TaqI TCGA 3 cut(s) 76, 170, 773
TaqII GACCGA 1 cut(s) 14
TasI AATT 4 cut(s) 52, 166, 730, 786
TatI WGTACW 2 cut(s) 134, 256
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 3 cut(s) 87, 583, 595
Tru1I TTAA 3 cut(s) 618, 639, 714
Tru9I TTAA 3 cut(s) 618, 639, 714
TscAI CASTG 4 cut(s) 310, 594, 611, 636
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 214
TspRI CASTG 4 cut(s) 310, 594, 611, 636
XapI RAATTY 2 cut(s) 52, 166
XhoI CTCGAG 1 cut(s) 75
XspI CTAG 1 cut(s) 720
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.