Rw4G004400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0011906
Physical Location & Seq
Forward (+)
8720569 .. 8721672
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004400.1

Sequence Viewer

Length: 822 bp
ATGGGGTGCTTCCTTGCCTGCTTCGGCATTTCCAAGAAGCGAAAGAGGCGAAGACTTTCCAATAGAGTTGCTGCAGCTGGTGGAGACTATAGACGTGGGAGTTATGTACCACTAGACTCATCATCTCTCGCAATAATCGGTCTTGATGGTCCGAAAGAGAGTCCCAATAGTGCAGGTTGTGAACAGCTCAGAGACAAGCCGAAAGAGGCGACGAGCTTCAAGGTCAGGAAGAAAGTCAGCTTCAATCTGAATGTCCAGACCTACGAGCCTATTTCAAATTTTAGATTTTGGTCAAAAGGAAGGTCATCCACTTCAGCATCTAAGAGGGCCTCAACTGCATTGAGTTCATCAATAGGACTTTTTCCTTCAAACTACAGGTACCAAAATGTTCGAGACAGCTATGACAGCTACGAAGAAGAGGACTATGTAGCAGATGAAGAAAGTGATCTTGATGATGATGATTACTATGGTGATGATGACTACTGCGATGGTGACAGTGATATGGATGATCCAAGAATGAGCCAAGAAGGGGTTCCTAAGCAAAGTTTCTCTTCATCTATAAATGGAGAATTGGAATCGTGCCGGTGGAATCTGAATGCGGGAGATAATATCCCATATGCACATTCTGTATTGAGTCCAATTGAAAATTTGAGTCAGTGGAAAGCAGCCAAAGCAAAAATAGCAGCACCAAAGCAGCAAAAGGAGAATGTCCCATCAATTCAAGAACCAAGAATTCTATACAGCAGATCAAGTTGCAACCAGTCCAAACCTCTACTGCAAGAAATCCCAGTCCACGCCAGCCTTTCAAGTTGGATAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.52

Weight (kDa)

6.22

Isoelectric Point (pI)

68.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33400
fragaria_vesca FvH4_4g04330 FvH4_4g04330
malus_domestica MD13G1219300.v1.1 MD16G1224700.v1.1
prunus_persica Prupe.1G046000_v2.0.a1
pyrus_communis pycom13g19420 pycom16g18800
rosa_chinensis RchiOBHm_Chr4g0394781
rosa_laevigata RLG00000009661
rosa_multiflora Rmu_sc0005356.1_g000002
rosa_roxburghii Rroxscaffold_5G00339820
rosa_rugosa Rorug03G0361500.1
rosa_samantha Rh3BG335900 Rh4AG055100 Rh4BG053000 Rh4CG059900 Rh4DG051600
rosa_wichuraiana Rw4G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 378
AciI CCGC 1 cut(s) 599
AclWI GGATC 1 cut(s) 503
AcsI RAATTY 3 cut(s) 277, 646, 732
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 108, 380
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 7 cut(s) 220, 244, 276, 369, 644, 722, 807
AjiI CACGTC 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 6 cut(s) 77, 187, 216, 240, 399, 408
AluI AGCT 6 cut(s) 77, 187, 216, 240, 399, 408
Alw26I GTCTC 3 cut(s) 78, 186, 387
AlwI GGATC 1 cut(s) 503
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 5 cut(s) 71, 74, 665, 683, 694
ApoI RAATTY 3 cut(s) 277, 646, 732
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 2 cut(s) 55, 531
Asp718I GGTACC 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 149, 327
AsuHPI GGTGA 2 cut(s) 482, 503
AvaII GGWCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 5 cut(s) 58, 86, 677, 695, 706
BccI CCATC 3 cut(s) 140, 482, 721
BcoDI GTCTC 3 cut(s) 78, 186, 387
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 3 cut(s) 72, 88, 373
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 5 cut(s) 72, 75, 666, 684, 695
BlsI GCNGC 5 cut(s) 73, 76, 667, 685, 696
Bme18I GGWCC 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 149, 327
BmiI GGNNCC 2 cut(s) 380, 534
BmrI ACTGGG 1 cut(s) 782
BmsI GCATC 1 cut(s) 326
BmuI ACTGGG 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 537
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 2 cut(s) 760, 788
BseGI GGATG 2 cut(s) 305, 511
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 2 cut(s) 760, 788
BseXI GCAGC 5 cut(s) 58, 86, 677, 695, 706
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 583
BslFI GGGAC 2 cut(s) 147, 695
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 3 cut(s) 78, 186, 387
BsmFI GGGAC 2 cut(s) 147, 695
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 3 cut(s) 445, 508, 746
BspACI CCGC 1 cut(s) 599
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 380, 534
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 2 cut(s) 760, 788
BssAI RCCGGY 1 cut(s) 582
BssMI GATC 3 cut(s) 445, 508, 746
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 2 cut(s) 411, 556
BstC8I GCNNGC 2 cut(s) 19, 799
BstDEI CTNAG 3 cut(s) 188, 321, 537
BstF5I GGATG 2 cut(s) 305, 511
BstKTI GATC 3 cut(s) 448, 511, 749
BstMAI GTCTC 3 cut(s) 78, 186, 387
BstMBI GATC 3 cut(s) 445, 508, 746
BstMWI GCNNNNNNNGC 5 cut(s) 46, 335, 405, 671, 680
BstSFI CTRYAG 3 cut(s) 72, 88, 373
BstV1I GCAGC 5 cut(s) 58, 86, 677, 695, 706
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 305, 511
BtsIMutI CAGTG 2 cut(s) 502, 662
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 19, 799
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 149, 327
Csp6I GTAC 2 cut(s) 107, 379
CviQI GTAC 2 cut(s) 107, 379
DdeI CTNAG 3 cut(s) 188, 321, 537
DpnI GATC 3 cut(s) 447, 510, 748
DpnII GATC 3 cut(s) 445, 508, 746
Eam1104I CTCTTC 2 cut(s) 411, 556
EarI CTCTTC 2 cut(s) 411, 556
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 732
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 2 cut(s) 147, 695
FauI CCCGC 1 cut(s) 592
FauNDI CATATG 1 cut(s) 616
Fnu4HI GCNGC 5 cut(s) 72, 75, 666, 684, 695
FokI GGATG 2 cut(s) 292, 518
Fsp4HI GCNGC 5 cut(s) 72, 75, 666, 684, 695
FspBI CTAG 1 cut(s) 113
GluI GCNGC 5 cut(s) 72, 75, 666, 684, 695
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 583
HinfI GANTC 6 cut(s) 116, 160, 575, 589, 634, 652
HpaII CCGG 1 cut(s) 583
HphI GGTGA 2 cut(s) 482, 503
Hpy166II GTNNAC 2 cut(s) 182, 793
Hpy188I TCNGA 4 cut(s) 153, 191, 249, 594
Hpy188III TCNNGA 6 cut(s) 143, 226, 256, 392, 449, 722
Hpy8I GTNNAC 2 cut(s) 182, 793
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 294, 375, 521
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 74, 173, 338, 620, 756, 778
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 335, 405, 671, 680
HpyF3I CTNAG 3 cut(s) 188, 321, 537
HpySE526I ACGT 1 cut(s) 94
KpnI GGTACC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 445, 508, 746
Lsp1109I GCAGC 5 cut(s) 58, 86, 677, 695, 706
LweI GCATC 1 cut(s) 326
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 491
MalI GATC 3 cut(s) 447, 510, 748
MboI GATC 3 cut(s) 445, 508, 746
MboII GAAGA 6 cut(s) 63, 241, 425, 428, 449, 543
MfeI CAATTG 1 cut(s) 639
MluCI AATT 6 cut(s) 277, 569, 639, 646, 717, 732
MlyI GAGTC 4 cut(s) 110, 169, 643, 661
MmeI TCCRAC 1 cut(s) 791
MnlI CCTC 6 cut(s) 39, 199, 318, 340, 412, 780
MroXI GAANNNNTTC 2 cut(s) 55, 531
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 583
MunI CAATTG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 601
MwoI GCNNNNNNNGC 5 cut(s) 46, 335, 405, 671, 680
NdeI CATATG 1 cut(s) 616
NdeII GATC 3 cut(s) 445, 508, 746
NlaIV GGNNCC 2 cut(s) 380, 534
NmuCI GTSAC 1 cut(s) 491
PctI GAATGC 1 cut(s) 601
PdmI GAANNNNTTC 2 cut(s) 55, 531
PfeI GAWTC 2 cut(s) 575, 589
PkrI GCNGC 5 cut(s) 73, 76, 667, 685, 696
PleI GAGTC 4 cut(s) 110, 168, 642, 660
PpsI GAGTC 4 cut(s) 110, 168, 642, 660
PspN4I GGNNCC 2 cut(s) 380, 534
PspPI GGNCC 2 cut(s) 149, 327
PstI CTGCAG 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 2 cut(s) 108, 380
RsaNI GTAC 2 cut(s) 107, 379
SatI GCNGC 5 cut(s) 72, 75, 666, 684, 695
Sau3AI GATC 3 cut(s) 445, 508, 746
Sau96I GGNCC 2 cut(s) 149, 327
SchI GAGTC 4 cut(s) 110, 169, 643, 661
SfaNI GCATC 1 cut(s) 326
SfcI CTRYAG 3 cut(s) 72, 88, 373
SinI GGWCC 1 cut(s) 149
Sse9I AATT 6 cut(s) 277, 569, 639, 646, 717, 732
SsiI CCGC 1 cut(s) 599
SspMI CTAG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 497
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 391
TaqII GACCGA 1 cut(s) 128
TasI AATT 6 cut(s) 277, 569, 639, 646, 717, 732
TfiI GAWTC 2 cut(s) 575, 589
TscAI CASTG 2 cut(s) 502, 662
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 5 cut(s) 71, 74, 665, 683, 694
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 3 cut(s) 336, 450, 543
TspRI CASTG 2 cut(s) 502, 662
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 3 cut(s) 277, 646, 732
XmnI GAANNNNTTC 2 cut(s) 55, 531
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.