Prupe.1G046000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011906
Physical Location & Seq
Forward (+)
3276783 .. 3278352
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G046000.1

Sequence Viewer

Length: 846 bp
ATGGGGTGCTTCCTTGCCTGCTTTGGTTTTTCTAAGAAAAAAAAGCGGCGAAAACCCGGTAACAAAGTTGCAGCTGCTGGAGACCATGGACGTGGGAGCTATGTACCATTAGATTCATCTCTGACGATTATTGGTGTCGATGGTGCAAGAGAAAGTCTCCATAGTGCAGGTTCTGAACTCAGAGACAAGCCTAAGGAGCAGACAAGGTTCAAAATCAGAAAGAAAGTTAGCTTCAATCTAAATGTCCAGACCTATGAGCCTATTTCGACTGGTTATCATTTCTTGGAGAGTGACGAGGAGGAGGAAGTGGAAAAGAATGTCCAAGAAGTATCAAAAGGAAGCCTTTCCACTTCAGCATCTCAAAGGGATTCAACTACATTGCGGATGGGACTTTTTCCTTCAAATTACAGGTACCAAAATGTTCGAGACAGCTACGACGAAGACGACCATATAGCAGATGAGGAAAGTGATTTAGATAACGATGATAACGACATTGATGATGATGATGACAGTGAAATTGATGATCAAAGAATAAGCCAAGAGGGGTTTTCAAGGCAATTCTGTTCTTCCTCTATAAAAGGAGAATTGGAATATCCAAATGCTAGAGGCAATTTCCAGTATGTACATTCTGTACTGAGTCCAGTAGAGAATCTGACTCAGTGGAAAGCAGCCAAAGCAAAAGCAGCAGCACCAAAGCAGCAAAAGGAGAATATAGCAGCATTATCTCAAGAACCCCGGATGCCGCCTTCTAGCAGATCAAGTTATAACCAGTCCAAACCTCTATTGCAAGAAATCCCAGTTCATGCCAGTCTTTCAAGTTGGTTAAATTCACAAAGTACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.47

Weight (kDa)

5.29

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33400
fragaria_vesca FvH4_4g04330 FvH4_4g04330
malus_domestica MD13G1219300.v1.1 MD16G1224700.v1.1
prunus_persica Prupe.1G046000_v2.0.a1
pyrus_communis pycom13g19420 pycom16g18800
rosa_chinensis RchiOBHm_Chr4g0394781
rosa_laevigata RLG00000009661
rosa_multiflora Rmu_sc0005356.1_g000002
rosa_roxburghii Rroxscaffold_5G00339820
rosa_rugosa Rorug03G0361500.1
rosa_samantha Rh3BG335900 Rh4AG055100 Rh4BG053000 Rh4CG059900 Rh4DG051600
rosa_wichuraiana Rw4G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 765
Acc36I ACCTGC 1 cut(s) 158
Acc65I GGTACC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 411
AciI CCGC 3 cut(s) 46, 382, 743
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 5 cut(s) 105, 413, 624, 633, 838
AgsI TTSAA 6 cut(s) 211, 235, 372, 402, 552, 816
AjiI CACGTC 1 cut(s) 92
AluBI AGCT 4 cut(s) 74, 99, 231, 432
AluI AGCT 4 cut(s) 74, 99, 231, 432
Alw26I GTCTC 4 cut(s) 75, 161, 177, 420
AlwNI CAGNNNCTG 2 cut(s) 77, 173
ApeKI GCWGC 7 cut(s) 71, 74, 668, 683, 686, 697, 716
ApoI RAATTY 1 cut(s) 826
Asp700I GAANNNNTTC 1 cut(s) 343
Asp718I GGTACC 1 cut(s) 411
AsuC2I CCSGG 2 cut(s) 57, 736
AxyI CCTNAGG 1 cut(s) 192
BanI GGYRCC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 447
BbvI GCAGC 7 cut(s) 61, 83, 680, 695, 698, 709, 728
BccI CCATC 2 cut(s) 134, 379
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 2 cut(s) 57, 736
BcoDI GTCTC 4 cut(s) 75, 161, 177, 420
BfaI CTAG 2 cut(s) 603, 750
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 9 cut(s) 47, 72, 75, 669, 684, 687, 698, 717, 743
BlsI GCNGC 9 cut(s) 48, 73, 76, 670, 685, 688, 699, 718, 744
Bme1390I CCNGG 2 cut(s) 57, 736
BmgBI CACGTC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 2 cut(s) 57, 736
BmrI ACTGGG 1 cut(s) 791
BmsI GCATC 2 cut(s) 365, 729
BmuI ACTGGG 1 cut(s) 791
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 711
BpuMI CCSGG 2 cut(s) 57, 736
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 85, 734
Bse1I ACTGG 6 cut(s) 274, 616, 641, 769, 797, 807
Bse21I CCTNAGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 85, 734
BseGI GGATG 2 cut(s) 390, 744
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 3 cut(s) 193, 626, 671
BseNI ACTGG 6 cut(s) 274, 616, 641, 769, 797, 807
BseRI GAGGAG 2 cut(s) 311, 314
BseXI GCAGC 7 cut(s) 61, 83, 680, 695, 698, 709, 728
BsgI GTGCAG 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 57, 736
BslFI GGGAC 1 cut(s) 402
BsmAI GTCTC 4 cut(s) 75, 161, 177, 420
BsmFI GGGAC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 2 cut(s) 523, 755
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 3 cut(s) 46, 382, 743
BspCNI CTCAG 3 cut(s) 192, 627, 670
BspLI GGNNCC 1 cut(s) 413
BspMI ACCTGC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 411
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 6 cut(s) 274, 616, 641, 769, 797, 807
BssECI CCNNGG 2 cut(s) 85, 734
BssMI GATC 2 cut(s) 523, 755
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 622
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 5 cut(s) 33, 179, 192, 635, 657
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 390, 744
BstKTI GATC 2 cut(s) 526, 758
BstMAI GTCTC 4 cut(s) 75, 161, 177, 420
BstMBI GATC 2 cut(s) 523, 755
BstMWI GCNNNNNNNGC 3 cut(s) 196, 674, 683
BstSCI CCNGG 2 cut(s) 55, 734
BstV1I GCAGC 7 cut(s) 61, 83, 680, 695, 698, 709, 728
BstV2I GAAGAC 1 cut(s) 447
BstXI CCANNNNNNTGG 1 cut(s) 92
Bsu36I CCTNAGG 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 85
BtrI CACGTC 1 cut(s) 92
BtsCI GGATG 2 cut(s) 390, 744
BtsIMutI CAGTG 2 cut(s) 517, 665
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 2 cut(s) 77, 173
Csp6I GTAC 5 cut(s) 104, 412, 623, 632, 837
CviAII CATG 2 cut(s) 86, 803
CviJI RGCY 9 cut(s) 74, 99, 190, 231, 259, 342, 432, 537, 671
CviKI_1 RGCY 9 cut(s) 74, 99, 190, 231, 259, 342, 432, 537, 671
CviQI GTAC 5 cut(s) 104, 412, 623, 632, 837
DdeI CTNAG 5 cut(s) 33, 179, 192, 635, 657
DpnI GATC 2 cut(s) 525, 757
DpnII GATC 2 cut(s) 523, 755
Eco130I CCWWGG 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 89, 806
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 402
FatI CATG 2 cut(s) 85, 802
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 9 cut(s) 47, 72, 75, 669, 684, 687, 698, 717, 743
FokI GGATG 2 cut(s) 397, 751
Fsp4HI GCNGC 9 cut(s) 47, 72, 75, 669, 684, 687, 698, 717, 743
FspBI CTAG 2 cut(s) 603, 750
GluI GCNGC 9 cut(s) 47, 72, 75, 669, 684, 687, 698, 717, 743
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 2 cut(s) 57, 736
Hin1II CATG 2 cut(s) 89, 806
HinfI GANTC 5 cut(s) 113, 368, 637, 649, 655
HpaII CCGG 2 cut(s) 57, 736
Hpy188I TCNGA 5 cut(s) 123, 175, 182, 218, 654
Hpy188III TCNNGA 3 cut(s) 247, 425, 728
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 2 cut(s) 408, 756
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 71, 146, 167, 787
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 674, 683
HpyF3I CTNAG 5 cut(s) 33, 179, 192, 635, 657
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 2 cut(s) 89, 806
KpnI GGTACC 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 523, 755
LmnI GCTCC 2 cut(s) 96, 196
Lsp1109I GCAGC 7 cut(s) 61, 83, 680, 695, 698, 709, 728
LweI GCATC 2 cut(s) 365, 729
MaeI CTAG 2 cut(s) 603, 750
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 2 cut(s) 59, 290
MalI GATC 2 cut(s) 525, 757
MboI GATC 2 cut(s) 523, 755
MboII GAAGA 2 cut(s) 452, 558
MluCI AATT 7 cut(s) 403, 516, 557, 584, 610, 826, 841
MlyI GAGTC 2 cut(s) 646, 649
MnlI CCTC 8 cut(s) 289, 292, 295, 454, 535, 580, 599, 789
MroXI GAANNNNTTC 1 cut(s) 343
MseI TTAA 1 cut(s) 824
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 2 cut(s) 57, 736
MspR9I CCNGG 2 cut(s) 57, 736
MwoI GCNNNNNNNGC 3 cut(s) 196, 674, 683
NciI CCSGG 2 cut(s) 57, 736
NcoI CCATGG 1 cut(s) 85
NdeII GATC 2 cut(s) 523, 755
NlaIII CATG 2 cut(s) 89, 806
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 1 cut(s) 290
PcsI WCGNNNNNNNCGW 2 cut(s) 441, 486
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 113, 368, 649
PkrI GCNGC 9 cut(s) 48, 73, 76, 670, 685, 688, 699, 718, 744
PleI GAGTC 2 cut(s) 645, 649
PpsI GAGTC 2 cut(s) 645, 649
PsiI TTATAA 1 cut(s) 765
PspN4I GGNNCC 1 cut(s) 413
PstNI CAGNNNCTG 2 cut(s) 77, 173
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 5 cut(s) 105, 413, 624, 633, 838
RsaNI GTAC 5 cut(s) 104, 412, 623, 632, 837
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 824
SatI GCNGC 9 cut(s) 47, 72, 75, 669, 684, 687, 698, 717, 743
Sau3AI GATC 2 cut(s) 523, 755
SchI GAGTC 2 cut(s) 646, 649
ScrFI CCNGG 2 cut(s) 57, 736
SfaNI GCATC 2 cut(s) 365, 729
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 726
SmoI CTYRAG 1 cut(s) 726
Sse9I AATT 7 cut(s) 403, 516, 557, 584, 610, 826, 841
SsiI CCGC 3 cut(s) 46, 382, 743
SspMI CTAG 2 cut(s) 603, 750
StyD4I CCNGG 2 cut(s) 55, 734
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 1 cut(s) 94
TaqI TCGA 3 cut(s) 138, 266, 424
TasI AATT 7 cut(s) 403, 516, 557, 584, 610, 826, 841
TatI WGTACW 3 cut(s) 622, 631, 836
TauI GCSGC 2 cut(s) 49, 745
TfiI GAWTC 3 cut(s) 113, 368, 649
Tru1I TTAA 1 cut(s) 824
Tru9I TTAA 1 cut(s) 824
TscAI CASTG 2 cut(s) 517, 665
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 7 cut(s) 71, 74, 668, 683, 686, 697, 716
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 105, 791
TspRI CASTG 2 cut(s) 517, 665
XapI RAATTY 1 cut(s) 826
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 2 cut(s) 603, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.