MD13G1219300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011906
Physical Location & Seq
Forward (+)
21189178 .. 21190705
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1219300.v1.1.491

Sequence Viewer

Length: 837 bp
ATGGGGTGTTTTCTTGCCTGTTTCGGTTTTTCTAAGAAGAGAAAGCGGCGAAACCCCGCTACAAAAGCCCCCTCTGGTGACCATAGACGTGTGAGTTATGTACCATTGGATTCATCTGTCAGAATTATTGGTGTTGATGGTGGAGGAGAGAGTCTCAAATCTGAACTATACAGAGATAAGGCCAAGGAGCAGAAGAGGTTGAAAACCCGAAAGAAAGTTAGCTTCAATCTGAATGTCCAGACGTATGAGCCTATTTCGACCGCTTACCATTTCTTGGACAGCTATGAGGAGGAGGAAATCGGAGAAAAGAATGTCAAAGAAATGTCGAAGGGAAGACTTTCCACTTCAGCGTCTGAAAGGGATTCAACAACACTGAGGGTAGGACTATTTCCTTCAAGCTACAGGTACCAAAATGTTCGGGACAGCTATGAAGAAGAGGAAAGTGAGTTGCATGACAATGATATCGACGTTGTTTATGAGGATGACTACTATGATGACGATGAAGACAGTGAGATTGATGAACAACAAATAAGCCGAGAAGGGTTTTCGGAGGAACTATGTTCTGCATCGCGAAATGGAGAATCTGAATATCCAGATGCTAGAGATAATATCCGGTATTTAATTTCTGTACTGAGTCCAGTAGAGAATCTCACACAGTGGAAAGCAGCCAAAGCAGCAGCACCAAAGCACCAAAAGGAGAATACTGCATTGTTTCAACAACCACGGATGCCTTATAGCACCAGATCAAATTTTAACCAGCCCACCAAACCTCTCCTGCAAGAAGTCCCAGTTCATGCCAGTCTTTCGAGTTGGTTAAATTCGCAAAGTACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.84

Weight (kDa)

5.36

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33400
fragaria_vesca FvH4_4g04330 FvH4_4g04330
malus_domestica MD13G1219300.v1.1 MD16G1224700.v1.1
prunus_persica Prupe.1G046000_v2.0.a1
pyrus_communis pycom13g19420 pycom16g18800
rosa_chinensis RchiOBHm_Chr4g0394781
rosa_laevigata RLG00000009661
rosa_multiflora Rmu_sc0005356.1_g000002
rosa_roxburghii Rroxscaffold_5G00339820
rosa_rugosa Rorug03G0361500.1
rosa_samantha Rh3BG335900 Rh4AG055100 Rh4BG053000 Rh4CG059900 Rh4DG051600
rosa_wichuraiana Rw4G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 405
AccB7I CCANNNNNTGG 1 cut(s) 274
AccII CGCG 1 cut(s) 571
AciI CCGC 3 cut(s) 46, 57, 261
AcsI RAATTY 2 cut(s) 748, 817
AcuI CTGAAG 1 cut(s) 330
AdeI CACNNNGTG 1 cut(s) 657
AfaI GTAC 4 cut(s) 102, 407, 630, 829
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 5 cut(s) 202, 226, 366, 396, 716
AjiI CACGTC 1 cut(s) 89
AluBI AGCT 4 cut(s) 222, 282, 399, 426
AluI AGCT 4 cut(s) 222, 282, 399, 426
Alw26I GTCTC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 665, 674, 677
ApoI RAATTY 2 cut(s) 748, 817
Asp700I GAANNNNTTC 1 cut(s) 337
Asp718I GGTACC 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 405
BbsI GAAGAC 2 cut(s) 340, 510
BbvI GCAGC 3 cut(s) 677, 686, 689
BccI CCATC 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 400
BisI GCNGC 4 cut(s) 47, 666, 675, 678
BlsI GCNGC 4 cut(s) 48, 667, 676, 679
BmcAI AGTACT 1 cut(s) 829
BmgBI CACGTC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 407
BmrI ACTGGG 1 cut(s) 782
BmsI GCATC 3 cut(s) 575, 586, 717
BmuI ACTGGG 1 cut(s) 782
BpiI GAAGAC 2 cut(s) 340, 510
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BsaJI CCNNGG 2 cut(s) 183, 722
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 638, 788, 798
BseDI CCNNGG 2 cut(s) 183, 722
BseGI GGATG 2 cut(s) 487, 732
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 365, 623
BseNI ACTGG 3 cut(s) 638, 788, 798
BseRI GAGGAG 3 cut(s) 159, 302, 305
BseXI GCAGC 3 cut(s) 677, 686, 689
Bsh1236I CGCG 1 cut(s) 571
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 613
BslFI GGGAC 2 cut(s) 434, 770
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 434, 770
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 743
Bsp68I TCGCGA 1 cut(s) 571
BspACI CCGC 3 cut(s) 46, 57, 261
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 366, 624
BspFNI CGCG 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 405
BsrI ACTGG 3 cut(s) 638, 788, 798
BssECI CCNNGG 2 cut(s) 183, 722
BssMI GATC 1 cut(s) 743
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 509, 657
Bst6I CTCTTC 3 cut(s) 32, 188, 429
BstDEI CTNAG 3 cut(s) 33, 374, 632
BstDSI CCRYGG 1 cut(s) 722
BstEII GGTNACC 1 cut(s) 77
BstF5I GGATG 2 cut(s) 487, 732
BstFNI CGCG 1 cut(s) 571
BstKTI GATC 1 cut(s) 746
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 743
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 65, 671, 674
BstPI GGTNACC 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 400
BstUI CGCG 1 cut(s) 571
BstV1I GCAGC 3 cut(s) 677, 686, 689
BstV2I GAAGAC 2 cut(s) 340, 510
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 722
BtgZI GCGATG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 487, 732
BtsIMutI CAGTG 3 cut(s) 371, 514, 662
BtuMI TCGCGA 1 cut(s) 571
CaiI CAGNNNCTG 1 cut(s) 353
CseI GACGC 1 cut(s) 339
Csp6I GTAC 4 cut(s) 101, 406, 629, 828
CviAII CATG 2 cut(s) 452, 794
CviQI GTAC 4 cut(s) 101, 406, 629, 828
DdeI CTNAG 3 cut(s) 33, 374, 632
DpnI GATC 1 cut(s) 745
DpnII GATC 1 cut(s) 743
DraIII CACNNNGTG 1 cut(s) 657
Eam1104I CTCTTC 3 cut(s) 32, 188, 429
EarI CTCTTC 3 cut(s) 32, 188, 429
Eco130I CCWWGG 1 cut(s) 183
Eco32I GATATC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 330
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 455, 797
FaqI GGGAC 2 cut(s) 434, 770
FatI CATG 2 cut(s) 451, 793
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 47, 666, 675, 678
FokI GGATG 2 cut(s) 494, 739
Fsp4HI GCNGC 4 cut(s) 47, 666, 675, 678
FspBI CTAG 1 cut(s) 600
GluI GCNGC 4 cut(s) 47, 666, 675, 678
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 613
HgaI GACGC 1 cut(s) 339
Hin1II CATG 2 cut(s) 455, 797
HinfI GANTC 6 cut(s) 110, 151, 362, 581, 634, 646
HpaII CCGG 1 cut(s) 613
HphI GGTGA 1 cut(s) 89
Hpy188I TCNGA 7 cut(s) 122, 163, 231, 302, 355, 550, 586
Hpy188III TCNNGA 4 cut(s) 238, 419, 570, 593
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 3 cut(s) 322, 402, 533
HpyCH4III ACNGT 2 cut(s) 509, 657
HpyCH4IV ACGT 3 cut(s) 88, 242, 468
HpyCH4V TGCA 4 cut(s) 451, 566, 707, 778
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 671, 674
HpyF3I CTNAG 3 cut(s) 33, 374, 632
HpySE526I ACGT 3 cut(s) 88, 242, 468
Hsp92II CATG 2 cut(s) 455, 797
KpnI GGTACC 1 cut(s) 409
Kzo9I GATC 1 cut(s) 743
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 3 cut(s) 677, 686, 689
LweI GCATC 3 cut(s) 575, 586, 717
MaeI CTAG 1 cut(s) 600
MaeII ACGT 3 cut(s) 88, 242, 468
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 745
MboI GATC 1 cut(s) 743
MboII GAAGA 6 cut(s) 49, 205, 345, 443, 446, 515
MluCI AATT 5 cut(s) 123, 621, 748, 817, 832
MlyI GAGTC 2 cut(s) 160, 643
MroXI GAANNNNTTC 1 cut(s) 337
MseI TTAA 3 cut(s) 620, 753, 815
MslI CAYNNNNRTG 2 cut(s) 87, 456
MspI CCGG 1 cut(s) 613
MvnI CGCG 1 cut(s) 571
MwoI GCNNNNNNNGC 3 cut(s) 65, 671, 674
NdeII GATC 1 cut(s) 743
NlaIII CATG 2 cut(s) 455, 797
NlaIV GGNNCC 1 cut(s) 407
NmeAIII GCCGAG 1 cut(s) 560
NmuCI GTSAC 1 cut(s) 77
NruI TCGCGA 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 337
PfeI GAWTC 4 cut(s) 110, 362, 581, 646
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 4 cut(s) 48, 667, 676, 679
PleI GAGTC 2 cut(s) 159, 642
PpsI GAGTC 2 cut(s) 159, 642
PspEI GGTNACC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 353
RruI TCGCGA 1 cut(s) 571
RsaI GTAC 4 cut(s) 102, 407, 630, 829
RsaNI GTAC 4 cut(s) 101, 406, 629, 828
RseI CAYNNNNRTG 2 cut(s) 87, 456
SaqAI TTAA 3 cut(s) 620, 753, 815
SatI GCNGC 4 cut(s) 47, 666, 675, 678
Sau3AI GATC 1 cut(s) 743
ScaI AGTACT 1 cut(s) 829
SchI GAGTC 2 cut(s) 160, 643
SfaNI GCATC 3 cut(s) 575, 586, 717
SfcI CTRYAG 1 cut(s) 400
SmiMI CAYNNNNRTG 2 cut(s) 87, 456
Sse9I AATT 5 cut(s) 123, 621, 748, 817, 832
SsiI CCGC 3 cut(s) 46, 57, 261
SspMI CTAG 1 cut(s) 600
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 509, 657
TaiI ACGT 3 cut(s) 91, 245, 471
TaqI TCGA 4 cut(s) 257, 326, 465, 806
TasI AATT 5 cut(s) 123, 621, 748, 817, 832
TatI WGTACW 2 cut(s) 628, 827
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 4 cut(s) 110, 362, 581, 646
Tru1I TTAA 3 cut(s) 620, 753, 815
Tru9I TTAA 3 cut(s) 620, 753, 815
TscAI CASTG 3 cut(s) 378, 514, 662
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 3 cut(s) 665, 674, 677
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 5 cut(s) 102, 444, 516, 534, 782
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 3 cut(s) 378, 514, 662
Van91I CCANNNNNTGG 1 cut(s) 274
XapI RAATTY 2 cut(s) 748, 817
XmnI GAANNNNTTC 1 cut(s) 337
XspI CTAG 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.