Rh4AG055100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011906
Physical Location & Seq
Forward (+)
11488321 .. 11490127
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG055100.1

Sequence Viewer

Length: 873 bp
ATGGGGTGCTTCCTTGCCTGCTTCGGCATTTCCAAGAAGCGAAAGAGGCGAAGACTTTCCAATAGAGTTGCTGCAGCTGGTGGAGACTATAGACGTGGGAGTTATGTACCACTAGACTCATCATCTCTCGCAATAATCGGTCTTGATGGTCCGAAAGAGAGTCCCAATAGTGCAGGTTGTGAACAGCTCAGAGACAAGCCGAAAGAGGCGACGAGCTTCAAGGTCAGGAAGAAAGTCAGCTTCAATCTGAATGTCCAGACCTACGAGCCTATTTCAAATGATTATGATTTTGTGGAGAGTGAGGAGGAGGAAGAAGAAGTTGACAACAATGGACAGGAAGGGTCAAAAGGAAGGTCATCCACCTCAGCATCTAAGAGGGCCTCAACTGCATTGAGTTCATCAATAGGACTTTTTCCTTCAAACTACAGGTACCAAAATGTTCGAGACAGCTATGACAGCTACGAAGAAGAGGACTATGTAGCAGATGAAGAAAGTGATCTTGATGATGATGATTACTATGGTGATGATGACTACTGCGATGGTGACAGTGATATGGATGATCCAAGAATGAGCCAAGAAGGGGTTCCTAAGCAAAGTTTCTCTTCATCTATAAATGGAGAATTGGAATCGTGCCGGTGGAATCTGAATGCGGGAGATAATATCCCATATGCACATTCTGTATTGAGTCCAATTGAAAATTTGAGTCAGTGGAAAGCAGCCAAAGCAAAAATAGCAGCACCAAAGCAGCAAAAGGAGAATGTCCCATCAATTCAAGAACCAAGAATTCTATACAGCAGATCAAGTTGCAACCAGTCCAAACCTCTACTGCAAGAAATCCCAGTCCACGCCAGCCTTTCAAGTTGGATAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

32.33

Weight (kDa)

4.81

Isoelectric Point (pI)

72.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33400
fragaria_vesca FvH4_4g04330 FvH4_4g04330
malus_domestica MD13G1219300.v1.1 MD16G1224700.v1.1
prunus_persica Prupe.1G046000_v2.0.a1
pyrus_communis pycom13g19420 pycom16g18800
rosa_chinensis RchiOBHm_Chr4g0394781
rosa_laevigata RLG00000009661
rosa_multiflora Rmu_sc0005356.1_g000002
rosa_roxburghii Rroxscaffold_5G00339820
rosa_rugosa Rorug03G0361500.1
rosa_samantha Rh3BG335900 Rh4AG055100 Rh4BG053000 Rh4CG059900 Rh4DG051600
rosa_wichuraiana Rw4G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 429
AciI CCGC 1 cut(s) 650
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 2 cut(s) 697, 783
AfaI GTAC 2 cut(s) 108, 431
AfiI CCNNNNNNNGG 1 cut(s) 580
AgsI TTSAA 7 cut(s) 220, 244, 276, 420, 695, 773, 858
AjiI CACGTC 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 6 cut(s) 77, 187, 216, 240, 450, 459
AluI AGCT 6 cut(s) 77, 187, 216, 240, 450, 459
Alw26I GTCTC 3 cut(s) 78, 186, 438
AlwI GGATC 1 cut(s) 554
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 5 cut(s) 71, 74, 716, 734, 745
ApoI RAATTY 2 cut(s) 697, 783
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
Asp700I GAANNNNTTC 2 cut(s) 55, 582
Asp718I GGTACC 1 cut(s) 429
AspS9I GGNCC 2 cut(s) 149, 378
AsuHPI GGTGA 2 cut(s) 533, 554
AvaII GGWCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 364
BbvI GCAGC 5 cut(s) 58, 86, 728, 746, 757
BccI CCATC 3 cut(s) 140, 533, 772
BcoDI GTCTC 3 cut(s) 78, 186, 438
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 3 cut(s) 72, 88, 424
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 5 cut(s) 72, 75, 717, 735, 746
BlsI GCNGC 5 cut(s) 73, 76, 718, 736, 747
Bme18I GGWCC 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 149, 378
BmiI GGNNCC 2 cut(s) 431, 585
BmrI ACTGGG 1 cut(s) 833
BmsI GCATC 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 833
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 2 cut(s) 364, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse118I RCCGGY 1 cut(s) 633
Bse1I ACTGG 2 cut(s) 811, 839
BseGI GGATG 2 cut(s) 356, 562
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMII CTCAG 2 cut(s) 202, 378
BseNI ACTGG 2 cut(s) 811, 839
BseRI GAGGAG 2 cut(s) 317, 320
BseXI GCAGC 5 cut(s) 58, 86, 728, 746, 757
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 380
BshNI GGYRCC 1 cut(s) 429
BsiSI CCGG 1 cut(s) 634
BslFI GGGAC 2 cut(s) 147, 746
BslI CCNNNNNNNGG 1 cut(s) 580
BsmAI GTCTC 3 cut(s) 78, 186, 438
BsmFI GGGAC 2 cut(s) 147, 746
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 1 cut(s) 380
Bsp143I GATC 3 cut(s) 496, 559, 797
BspACI CCGC 1 cut(s) 650
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 2 cut(s) 201, 377
BspLI GGNNCC 2 cut(s) 431, 585
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 633
BsrI ACTGG 2 cut(s) 811, 839
BssAI RCCGGY 1 cut(s) 633
BssMI GATC 3 cut(s) 496, 559, 797
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 2 cut(s) 462, 607
BstC8I GCNNGC 2 cut(s) 19, 850
BstDEI CTNAG 4 cut(s) 188, 364, 372, 588
BstF5I GGATG 2 cut(s) 356, 562
BstKTI GATC 3 cut(s) 499, 562, 800
BstMAI GTCTC 3 cut(s) 78, 186, 438
BstMBI GATC 3 cut(s) 496, 559, 797
BstMWI GCNNNNNNNGC 5 cut(s) 46, 386, 456, 722, 731
BstSFI CTRYAG 3 cut(s) 72, 88, 424
BstV1I GCAGC 5 cut(s) 58, 86, 728, 746, 757
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 380
BtgZI GCGATG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 356, 562
BtsIMutI CAGTG 2 cut(s) 553, 713
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 19, 850
Cfr10I RCCGGY 1 cut(s) 633
Cfr13I GGNCC 2 cut(s) 149, 378
Csp6I GTAC 2 cut(s) 107, 430
CviQI GTAC 2 cut(s) 107, 430
DdeI CTNAG 4 cut(s) 188, 364, 372, 588
DpnI GATC 3 cut(s) 498, 561, 799
DpnII GATC 3 cut(s) 496, 559, 797
Eam1104I CTCTTC 2 cut(s) 462, 607
EarI CTCTTC 2 cut(s) 462, 607
Eco47I GGWCC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 783
FalI AAGNNNNNCTT 2 cut(s) 586, 618
FaqI GGGAC 2 cut(s) 147, 746
FauI CCCGC 1 cut(s) 643
FauNDI CATATG 1 cut(s) 667
Fnu4HI GCNGC 5 cut(s) 72, 75, 717, 735, 746
FokI GGATG 2 cut(s) 343, 569
Fsp4HI GCNGC 5 cut(s) 72, 75, 717, 735, 746
FspBI CTAG 1 cut(s) 113
GluI GCNGC 5 cut(s) 72, 75, 717, 735, 746
HaeIII GGCC 1 cut(s) 380
HapII CCGG 1 cut(s) 634
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 6 cut(s) 116, 160, 626, 640, 685, 703
HpaII CCGG 1 cut(s) 634
HphI GGTGA 2 cut(s) 533, 554
Hpy166II GTNNAC 3 cut(s) 182, 322, 844
Hpy188I TCNGA 4 cut(s) 153, 191, 249, 645
Hpy188III TCNNGA 6 cut(s) 143, 226, 256, 443, 500, 773
Hpy8I GTNNAC 3 cut(s) 182, 322, 844
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 4 cut(s) 332, 345, 426, 572
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 74, 173, 389, 671, 807, 829
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 386, 456, 722, 731
HpyF3I CTNAG 4 cut(s) 188, 364, 372, 588
HpySE526I ACGT 1 cut(s) 94
KpnI GGTACC 1 cut(s) 433
Kzo9I GATC 3 cut(s) 496, 559, 797
Lsp1109I GCAGC 5 cut(s) 58, 86, 728, 746, 757
LweI GCATC 1 cut(s) 377
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 542
MalI GATC 3 cut(s) 498, 561, 799
MboI GATC 3 cut(s) 496, 559, 797
MboII GAAGA 8 cut(s) 63, 241, 323, 326, 476, 479, 500, 594
MfeI CAATTG 1 cut(s) 690
MluCI AATT 5 cut(s) 620, 690, 697, 768, 783
MlyI GAGTC 4 cut(s) 110, 169, 694, 712
MmeI TCCRAC 1 cut(s) 842
MroXI GAANNNNTTC 2 cut(s) 55, 582
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 634
MunI CAATTG 1 cut(s) 690
Mva1269I GAATGC 1 cut(s) 652
MwoI GCNNNNNNNGC 5 cut(s) 46, 386, 456, 722, 731
NdeI CATATG 1 cut(s) 667
NdeII GATC 3 cut(s) 496, 559, 797
NlaIV GGNNCC 2 cut(s) 431, 585
NmuCI GTSAC 1 cut(s) 542
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 2 cut(s) 55, 582
PfeI GAWTC 2 cut(s) 626, 640
PkrI GCNGC 5 cut(s) 73, 76, 718, 736, 747
PleI GAGTC 4 cut(s) 110, 168, 693, 711
PpsI GAGTC 4 cut(s) 110, 168, 693, 711
PspN4I GGNNCC 2 cut(s) 431, 585
PspPI GGNCC 2 cut(s) 149, 378
PstI CTGCAG 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 2 cut(s) 108, 431
RsaNI GTAC 2 cut(s) 107, 430
SatI GCNGC 5 cut(s) 72, 75, 717, 735, 746
Sau3AI GATC 3 cut(s) 496, 559, 797
Sau96I GGNCC 2 cut(s) 149, 378
SchI GAGTC 4 cut(s) 110, 169, 694, 712
SfaNI GCATC 1 cut(s) 377
SfcI CTRYAG 3 cut(s) 72, 88, 424
SinI GGWCC 1 cut(s) 149
Sse9I AATT 5 cut(s) 620, 690, 697, 768, 783
SsiI CCGC 1 cut(s) 650
SspMI CTAG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 442
TaqII GACCGA 1 cut(s) 128
TasI AATT 5 cut(s) 620, 690, 697, 768, 783
TfiI GAWTC 2 cut(s) 626, 640
TscAI CASTG 2 cut(s) 553, 713
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 5 cut(s) 71, 74, 716, 734, 745
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 3 cut(s) 387, 501, 594
TspRI CASTG 2 cut(s) 553, 713
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 2 cut(s) 697, 783
XmnI GAANNNNTTC 2 cut(s) 55, 582
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.