pycom13g19420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011906
Physical Location & Seq
Forward (+)
15419709 .. 15422124
2416 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g19420.5

Sequence Viewer

Length: 945 bp
ATGACTCTGTCTTTGGCAGGCGGTGGTGTTGAGGTAGATAGAGAAGGTGATTTGGGGGGTTTTGTGGGTTTGAAGGAGCAAGAGAGACGGAGGGGTGCGAAGAGGTGTGGGAAAGTGGTGGGTTTGACGGAGGAGTGTGGAGGCGGAAGAGAGAGCTCAGGATGTGCCGCCTCCAGTGACCATAGACGTGTGAGTTATGTACCATTGGACTCATCTGTCAGAATTATTGGTGTTGATGGTGGAAGAGAGAGTCTCATATCTGAACTATACAGAGATAAGGCCAAGGAGCAGAAGAGGTTGAAAACCCGAAAGAAAGTTAGCTTCAATCTGAATGTCCAGACGTATGAGCCTATTTCAACCGCTTACCATTTCTTGGACAGCTATGAGGAGGAAGAAATCGGAGAAAAGAATGTCAAAGAAACGTCAAAGGGAAGACTTTCCACTTCAGCGTCTGAAAGGGATTCAACAACACTGAGAGTAGGACTATTTCCTTCAAACTACAGGTACCAAAATGTTCGGGACAGCTATGAAGAAGAGGAAAGTGAGTTGCATGACAATGATATCGACGTTGATGATGAGGATGACTACTATGATGACGATGAAGACAGTGAGATTGATGAACACCAAATAAGCCGAGAAGGGTTTTCGGAGGAACTATGCTCTGCATCGCGAAATGGAGAATTGGAATATCCAGATGCTAGAGATAATATCCGGTATGTAAATTCTGTACTGAGTCCAGTAGAGAATCTCACACAGTGGAAAGCAGCCAAAGCAAAAGCAGCAGCAGCACCAAAGCACCAAAAGGAGATTACTGCATTATTTCAACAACCCCGGATGCCTTATAGCACCAGATCGAATTTTAACCAGTCCACCAAAACTCTCCTGCAAGAAATCCCAGTTCATGCCAGTCTTTCGAGTTGGTTAAATTCGCAAAGTACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

35.3

Weight (kDa)

4.97

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33400
fragaria_vesca FvH4_4g04330 FvH4_4g04330
malus_domestica MD13G1219300.v1.1 MD16G1224700.v1.1
prunus_persica Prupe.1G046000_v2.0.a1
pyrus_communis pycom13g19420 pycom16g18800
rosa_chinensis RchiOBHm_Chr4g0394781
rosa_laevigata RLG00000009661
rosa_multiflora Rmu_sc0005356.1_g000002
rosa_roxburghii Rroxscaffold_5G00339820
rosa_rugosa Rorug03G0361500.1
rosa_samantha Rh3BG335900 Rh4AG055100 Rh4BG053000 Rh4CG059900 Rh4DG051600
rosa_wichuraiana Rw4G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AccB7I CCANNNNNTGG 1 cut(s) 373
AccII CGCG 1 cut(s) 670
AciI CCGC 4 cut(s) 21, 144, 168, 360
AcsI RAATTY 3 cut(s) 721, 856, 925
AcuI CTGAAG 1 cut(s) 429
AdeI CACNNNGTG 1 cut(s) 756
AfaI GTAC 4 cut(s) 201, 506, 729, 937
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 7 cut(s) 73, 301, 325, 357, 465, 495, 824
AjiI CACGTC 1 cut(s) 188
AluBI AGCT 4 cut(s) 156, 321, 381, 525
AluI AGCT 4 cut(s) 156, 321, 381, 525
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 79, 257
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 4 cut(s) 764, 779, 782, 785
ApoI RAATTY 3 cut(s) 721, 856, 925
ArsI GACNNNNNNTTYG 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 436
Asp718I GGTACC 1 cut(s) 504
AsuC2I CCSGG 1 cut(s) 832
AsuHPI GGTGA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 504
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 439, 609
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 4 cut(s) 776, 791, 794, 797
BccI CCATC 1 cut(s) 230
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 2 cut(s) 79, 257
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 1 cut(s) 499
BisI GCNGC 5 cut(s) 168, 765, 780, 783, 786
BlsI GCNGC 5 cut(s) 169, 766, 781, 784, 787
BmcAI AGTACT 1 cut(s) 937
Bme1390I CCNGG 1 cut(s) 832
BmgBI CACGTC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 1 cut(s) 832
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 3 cut(s) 674, 685, 825
BmuI ACTGGG 1 cut(s) 890
BpiI GAAGAC 2 cut(s) 439, 609
BplI GAGNNNNNCTC 2 cut(s) 237, 269
BpmI CTGGAG 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 832
BsaJI CCNNGG 2 cut(s) 282, 830
BsaWI WCCGGW 1 cut(s) 711
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 5 cut(s) 174, 737, 865, 896, 906
BseDI CCNNGG 2 cut(s) 282, 830
BseGI GGATG 3 cut(s) 167, 586, 840
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 3 cut(s) 171, 464, 722
BseNI ACTGG 5 cut(s) 174, 737, 865, 896, 906
BseRI GAGGAG 2 cut(s) 146, 401
BseXI GCAGC 4 cut(s) 776, 791, 794, 797
Bsh1236I CGCG 1 cut(s) 670
BshFI GGCC 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 504
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 2 cut(s) 712, 832
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 79, 257
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 851
Bsp68I TCGCGA 1 cut(s) 670
BspACI CCGC 4 cut(s) 21, 144, 168, 360
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 3 cut(s) 170, 465, 723
BspFNI CGCG 1 cut(s) 670
BspLI GGNNCC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 504
BsrI ACTGG 5 cut(s) 174, 737, 865, 896, 906
BssECI CCNNGG 2 cut(s) 282, 830
BssMI GATC 1 cut(s) 851
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 608, 756
Bst6I CTCTTC 5 cut(s) 95, 142, 238, 287, 528
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 157, 473, 731
BstF5I GGATG 3 cut(s) 167, 586, 840
BstFNI CGCG 1 cut(s) 670
BstKTI GATC 1 cut(s) 854
BstMAI GTCTC 2 cut(s) 79, 257
BstMBI GATC 1 cut(s) 851
BstMWI GCNNNNNNNGC 3 cut(s) 770, 779, 785
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 1 cut(s) 499
BstUI CGCG 1 cut(s) 670
BstV1I GCAGC 4 cut(s) 776, 791, 794, 797
BstV2I GAAGAC 2 cut(s) 439, 609
BsuRI GGCC 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 651
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 167, 586, 840
BtsIMutI CAGTG 4 cut(s) 181, 470, 613, 761
BtuMI TCGCGA 1 cut(s) 670
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 452
CseI GACGC 1 cut(s) 438
Csp6I GTAC 4 cut(s) 200, 505, 728, 936
CviAII CATG 2 cut(s) 551, 902
CviJI RGCY 8 cut(s) 156, 281, 321, 349, 381, 525, 633, 767
CviKI_1 RGCY 8 cut(s) 156, 281, 321, 349, 381, 525, 633, 767
CviQI GTAC 4 cut(s) 200, 505, 728, 936
DdeI CTNAG 3 cut(s) 157, 473, 731
DpnI GATC 1 cut(s) 853
DpnII GATC 1 cut(s) 851
DraIII CACNNNGTG 1 cut(s) 756
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
Eam1104I CTCTTC 5 cut(s) 95, 142, 238, 287, 528
EarI CTCTTC 5 cut(s) 95, 142, 238, 287, 528
EciI GGCGGA 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 158
Eco32I GATATC 1 cut(s) 562
Eco53kI GAGCTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 156
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 554, 905
FaqI GGGAC 1 cut(s) 533
FatI CATG 2 cut(s) 550, 901
Fnu4HI GCNGC 5 cut(s) 168, 765, 780, 783, 786
FokI GGATG 3 cut(s) 174, 593, 847
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 5 cut(s) 168, 765, 780, 783, 786
FspBI CTAG 1 cut(s) 699
GluI GCNGC 5 cut(s) 168, 765, 780, 783, 786
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 1 cut(s) 281
HapII CCGG 2 cut(s) 712, 832
HgaI GACGC 1 cut(s) 438
Hin1II CATG 2 cut(s) 554, 905
HinfI GANTC 6 cut(s) 4, 209, 250, 461, 733, 745
HpaII CCGG 2 cut(s) 712, 832
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 870
Hpy188I TCNGA 6 cut(s) 221, 262, 330, 401, 454, 649
Hpy188III TCNNGA 5 cut(s) 159, 337, 518, 669, 692
Hpy8I GTNNAC 1 cut(s) 870
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 4 cut(s) 38, 67, 501, 632
HpyCH4III ACNGT 2 cut(s) 608, 756
HpyCH4IV ACGT 4 cut(s) 187, 341, 422, 567
HpyCH4V TGCA 4 cut(s) 550, 665, 815, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 770, 779, 785
HpyF3I CTNAG 3 cut(s) 157, 473, 731
HpySE526I ACGT 4 cut(s) 187, 341, 422, 567
Hsp92II CATG 2 cut(s) 554, 905
KpnI GGTACC 1 cut(s) 508
Kzo9I GATC 1 cut(s) 851
LmnI GCTCC 2 cut(s) 76, 286
Lsp1109I GCAGC 4 cut(s) 776, 791, 794, 797
LweI GCATC 3 cut(s) 674, 685, 825
MaeI CTAG 1 cut(s) 699
MaeII ACGT 4 cut(s) 187, 341, 422, 567
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 853
MboI GATC 1 cut(s) 851
MboII GAAGA 9 cut(s) 112, 159, 255, 304, 404, 444, 542, 545, 614
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 6 cut(s) 222, 680, 721, 856, 925, 940
MlyI GAGTC 3 cut(s) 203, 259, 742
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 2 cut(s) 861, 923
MslI CAYNNNNRTG 2 cut(s) 186, 555
MspI CCGG 2 cut(s) 712, 832
MspR9I CCNGG 1 cut(s) 832
MvnI CGCG 1 cut(s) 670
MwoI GCNNNNNNNGC 3 cut(s) 770, 779, 785
NciI CCSGG 1 cut(s) 832
NdeII GATC 1 cut(s) 851
NlaIII CATG 2 cut(s) 554, 905
NlaIV GGNNCC 1 cut(s) 506
NmeAIII GCCGAG 1 cut(s) 659
NmuCI GTSAC 1 cut(s) 176
NruI TCGCGA 1 cut(s) 670
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 2 cut(s) 461, 745
PflFI GACNNNGTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 5 cut(s) 169, 766, 781, 784, 787
PleI GAGTC 3 cut(s) 203, 258, 741
PpsI GAGTC 3 cut(s) 203, 258, 741
Psp124BI GAGCTC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 452
PsyI GACNNNGTC 1 cut(s) 7
RruI TCGCGA 1 cut(s) 670
RsaI GTAC 4 cut(s) 201, 506, 729, 937
RsaNI GTAC 4 cut(s) 200, 505, 728, 936
RseI CAYNNNNRTG 2 cut(s) 186, 555
SacI GAGCTC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 861, 923
SatI GCNGC 5 cut(s) 168, 765, 780, 783, 786
Sau3AI GATC 1 cut(s) 851
ScaI AGTACT 1 cut(s) 937
SchI GAGTC 3 cut(s) 203, 259, 742
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 3 cut(s) 674, 685, 825
SfcI CTRYAG 1 cut(s) 499
SmiMI CAYNNNNRTG 2 cut(s) 186, 555
Sse9I AATT 6 cut(s) 222, 680, 721, 856, 925, 940
SsiI CCGC 4 cut(s) 21, 144, 168, 360
SspMI CTAG 1 cut(s) 699
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 830
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 608, 756
TaiI ACGT 4 cut(s) 190, 344, 425, 570
TaqI TCGA 3 cut(s) 564, 854, 914
TasI AATT 6 cut(s) 222, 680, 721, 856, 925, 940
TatI WGTACW 2 cut(s) 727, 935
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 461, 745
Tru1I TTAA 2 cut(s) 861, 923
Tru9I TTAA 2 cut(s) 861, 923
TscAI CASTG 4 cut(s) 181, 477, 613, 761
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 4 cut(s) 764, 779, 782, 785
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 4 cut(s) 543, 615, 633, 890
TspGWI ACGGA 2 cut(s) 103, 143
TspRI CASTG 4 cut(s) 181, 477, 613, 761
Tth111I GACNNNGTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 373
XapI RAATTY 3 cut(s) 721, 856, 925
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 1 cut(s) 699
ZrmI AGTACT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.