Rroxscaffold_5G00339820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011906
Physical Location & Seq
Forward (+)
8203601 .. 8205221
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339820.1

Sequence Viewer

Length: 873 bp
ATGGGGTGCTTCCTTGCCTGCTTCGGCATTTCCAAGAAGCGAAAGAGGCGAAGACTTTCCAATAGAGTTGCTGCAGCTGGTGGAGACTATAGACGTGGGAGTTATGTGCCATTGGACTCATCATCTCTCGCAATAATCGGTCTTGATGGTCCGAAAGAAAGTCCCAATAGTGCAGGTTGTGAACAGCTCAGAGACAAGCCCAAAGAGGCGACGAGCTTCAAGGTCAGGAAGAAAGTCAGCTTCAATCTGACTGTCCAGACCTACGAGCCTATTTCGAATGATTATGATTTTGTGGAGAGTGAGGAGGAGGAAGAAGAAGTTGACAACAATGGACAGGAAGGGTCAAAAGGAAGGTCATCCACTTCAGCATCTAAGAGGGCTTCAACTGCATTGAGTTCATCAATAGGACTTTTTCCTTCAAACTACAGGTACCAAAATGTTCGAGACAGCTACGACAGCTACGAAGAAGAGGACTATGTAGCAGATGAAGAAAGTGATCTTGATGATGATGATTACTATGGTGATGATGACTACTGCGATGGTGACAGTGATATGGATGATCCAAGAACGAGCCAAGAAGGGTTTCCTAAGCAAAGTTTCTCTTCATCTATAAATGGAGAATTGGAATCGCGCCGGTGGAATCTGAATGCGGGAGATAATATCCCATATGCACATTCTGTATTGAGTCCAATTGAAAATTTGAGTCAGTGGAAAGCAGCCAAAGCAAAAATAGCAGCACCAAAGCAGCAAAAGGAGAATGTCCCATCAATTCAAGAACCAAGAGTTCTATACAGCAGATCAAGTTGCAACCAGTCCAAACCTCTATTGCAAGAAATCCCAGTCCACGCAAGCCTTTCAAGTTGGATAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

32.37

Weight (kDa)

4.86

Isoelectric Point (pI)

72.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33400
fragaria_vesca FvH4_4g04330 FvH4_4g04330
malus_domestica MD13G1219300.v1.1 MD16G1224700.v1.1
prunus_persica Prupe.1G046000_v2.0.a1
pyrus_communis pycom13g19420 pycom16g18800
rosa_chinensis RchiOBHm_Chr4g0394781
rosa_laevigata RLG00000009661
rosa_multiflora Rmu_sc0005356.1_g000002
rosa_roxburghii Rroxscaffold_5G00339820
rosa_rugosa Rorug03G0361500.1
rosa_samantha Rh3BG335900 Rh4AG055100 Rh4BG053000 Rh4CG059900 Rh4DG051600
rosa_wichuraiana Rw4G004400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 429
AccII CGCG 1 cut(s) 631
AciI CCGC 1 cut(s) 650
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 1 cut(s) 431
AgsI TTSAA 7 cut(s) 220, 244, 384, 420, 695, 773, 858
AjiI CACGTC 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 6 cut(s) 77, 187, 216, 240, 450, 459
AluI AGCT 6 cut(s) 77, 187, 216, 240, 450, 459
Alw26I GTCTC 3 cut(s) 78, 186, 438
AlwI GGATC 1 cut(s) 554
ApeKI GCWGC 5 cut(s) 71, 74, 716, 734, 745
ApoI RAATTY 1 cut(s) 697
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
Asp700I GAANNNNTTC 2 cut(s) 55, 582
Asp718I GGTACC 1 cut(s) 429
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 533, 554
AsuII TTCGAA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 5 cut(s) 58, 86, 728, 746, 757
BccI CCATC 3 cut(s) 140, 533, 772
BcoDI GTCTC 3 cut(s) 78, 186, 438
BfmI CTRYAG 3 cut(s) 72, 88, 424
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 5 cut(s) 72, 75, 717, 735, 746
BlsI GCNGC 5 cut(s) 73, 76, 718, 736, 747
Bme18I GGWCC 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 431
BmrI ACTGGG 1 cut(s) 833
BmsI GCATC 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 833
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 588
Bpu14I TTCGAA 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 633
Bse1I ACTGG 2 cut(s) 811, 839
BseGI GGATG 2 cut(s) 356, 562
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 2 cut(s) 811, 839
BseRI GAGGAG 2 cut(s) 317, 320
BseXI GCAGC 5 cut(s) 58, 86, 728, 746, 757
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 631
BshNI GGYRCC 1 cut(s) 429
BsiSI CCGG 1 cut(s) 634
BslFI GGGAC 2 cut(s) 147, 746
BsmAI GTCTC 3 cut(s) 78, 186, 438
BsmFI GGGAC 2 cut(s) 147, 746
BsmI GAATGC 1 cut(s) 652
Bsp119I TTCGAA 1 cut(s) 275
Bsp143I GATC 3 cut(s) 496, 559, 797
BspACI CCGC 1 cut(s) 650
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 431
BspMAI CTGCAG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 554
BspT104I TTCGAA 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 633
BsrI ACTGG 2 cut(s) 811, 839
BssAI RCCGGY 1 cut(s) 633
BssMI GATC 3 cut(s) 496, 559, 797
Bst4CI ACNGT 2 cut(s) 253, 548
Bst6I CTCTTC 2 cut(s) 462, 607
BstBI TTCGAA 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 19, 850
BstDEI CTNAG 3 cut(s) 188, 372, 588
BstF5I GGATG 2 cut(s) 356, 562
BstFNI CGCG 1 cut(s) 631
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 3 cut(s) 499, 562, 800
BstMAI GTCTC 3 cut(s) 78, 186, 438
BstMBI GATC 3 cut(s) 496, 559, 797
BstMWI GCNNNNNNNGC 5 cut(s) 46, 386, 456, 722, 731
BstSFI CTRYAG 3 cut(s) 72, 88, 424
BstUI CGCG 1 cut(s) 631
BstV1I GCAGC 5 cut(s) 58, 86, 728, 746, 757
BstV2I GAAGAC 1 cut(s) 58
BtgZI GCGATG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 356, 562
BtsIMutI CAGTG 2 cut(s) 553, 713
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 19, 850
CfoI GCGC 1 cut(s) 633
Cfr10I RCCGGY 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 430
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 3 cut(s) 188, 372, 588
DpnI GATC 3 cut(s) 498, 561, 799
DpnII GATC 3 cut(s) 496, 559, 797
Eam1104I CTCTTC 2 cut(s) 462, 607
EarI CTCTTC 2 cut(s) 462, 607
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 348
FalI AAGNNNNNCTT 2 cut(s) 586, 618
FaqI GGGAC 2 cut(s) 147, 746
FauI CCCGC 1 cut(s) 643
FauNDI CATATG 1 cut(s) 667
Fnu4HI GCNGC 5 cut(s) 72, 75, 717, 735, 746
FokI GGATG 2 cut(s) 343, 569
Fsp4HI GCNGC 5 cut(s) 72, 75, 717, 735, 746
GlaI GCGC 1 cut(s) 632
GluI GCNGC 5 cut(s) 72, 75, 717, 735, 746
HapII CCGG 1 cut(s) 634
HhaI GCGC 1 cut(s) 633
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 5 cut(s) 116, 626, 640, 685, 703
HpaII CCGG 1 cut(s) 634
HphI GGTGA 2 cut(s) 533, 554
Hpy166II GTNNAC 3 cut(s) 182, 322, 844
Hpy188I TCNGA 4 cut(s) 153, 191, 249, 645
Hpy188III TCNNGA 6 cut(s) 143, 226, 256, 443, 500, 773
Hpy8I GTNNAC 3 cut(s) 182, 322, 844
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 4 cut(s) 332, 345, 426, 572
HpyCH4III ACNGT 2 cut(s) 253, 548
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 74, 173, 389, 671, 807, 829
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 386, 456, 722, 731
HpyF3I CTNAG 3 cut(s) 188, 372, 588
HpySE526I ACGT 1 cut(s) 94
HspAI GCGC 1 cut(s) 631
KpnI GGTACC 1 cut(s) 433
Kzo9I GATC 3 cut(s) 496, 559, 797
Lsp1109I GCAGC 5 cut(s) 58, 86, 728, 746, 757
LweI GCATC 1 cut(s) 377
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 542
MalI GATC 3 cut(s) 498, 561, 799
MboI GATC 3 cut(s) 496, 559, 797
MboII GAAGA 8 cut(s) 63, 241, 323, 326, 476, 479, 500, 594
MfeI CAATTG 1 cut(s) 690
MluCI AATT 4 cut(s) 620, 690, 697, 768
MlyI GAGTC 3 cut(s) 110, 694, 712
MmeI TCCRAC 1 cut(s) 842
MnlI CCTC 8 cut(s) 39, 199, 295, 298, 301, 369, 463, 831
MroXI GAANNNNTTC 2 cut(s) 55, 582
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 634
MunI CAATTG 1 cut(s) 690
Mva1269I GAATGC 1 cut(s) 652
MvnI CGCG 1 cut(s) 631
MwoI GCNNNNNNNGC 5 cut(s) 46, 386, 456, 722, 731
NdeI CATATG 1 cut(s) 667
NdeII GATC 3 cut(s) 496, 559, 797
NlaIV GGNNCC 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 542
NspV TTCGAA 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 2 cut(s) 55, 582
PfeI GAWTC 2 cut(s) 626, 640
PkrI GCNGC 5 cut(s) 73, 76, 718, 736, 747
PleI GAGTC 3 cut(s) 110, 693, 711
PpsI GAGTC 3 cut(s) 110, 693, 711
PspN4I GGNNCC 1 cut(s) 431
PspPI GGNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SatI GCNGC 5 cut(s) 72, 75, 717, 735, 746
Sau3AI GATC 3 cut(s) 496, 559, 797
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 3 cut(s) 110, 694, 712
SfaNI GCATC 1 cut(s) 377
SfcI CTRYAG 3 cut(s) 72, 88, 424
SfuI TTCGAA 1 cut(s) 275
SgrAI CRCCGGYG 1 cut(s) 633
SinI GGWCC 1 cut(s) 149
Sse9I AATT 4 cut(s) 620, 690, 697, 768
SsiI CCGC 1 cut(s) 650
TaaI ACNGT 2 cut(s) 253, 548
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 275, 442
TaqII GACCGA 1 cut(s) 128
TasI AATT 4 cut(s) 620, 690, 697, 768
TfiI GAWTC 2 cut(s) 626, 640
TscAI CASTG 2 cut(s) 553, 713
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 5 cut(s) 71, 74, 716, 734, 745
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 3 cut(s) 387, 501, 594
TspRI CASTG 2 cut(s) 553, 713
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 1 cut(s) 697
XmnI GAANNNNTTC 2 cut(s) 55, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.