AT2G33470

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006345
Physical Location & Seq
Reverse (-)
14176356 .. 14178800
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33470.2

Sequence Viewer

Length: 609 bp
ATGGAAGGGACTGTGTTCACGCCTTGTTTGGAAGGAATGAAGCATGTCAAATCTGATCAAGGCGAGATGCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGATAAATTTGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACATAACGAGGTTGGAGAAGAACTACTTATCTGATCCCGACAAGTTCAAGTACTTGTACACCTTTGTTCAAGTCGAAATTGAGTCTAAGATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAGAGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGACTGGTCAATGCCACAAGCTTGTGCTGACTCATACCAAAAAACACTCAAGAAATGGCACGGATGGCTCGCCAGCTCTACCTTCTCTATGGCTTTAAAGCTAGCTCCGGACAGGAAGAAGTTCATGGATGTCATATCTGGTTCTGGTAACATCCAAGCCGACATGGAAAGGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTGGCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

202

Amino Acids

22.74

Weight (kDa)

6.95

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 24 - 164 5.9e-47 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 460
AclWI GGATC 2 cut(s) 194, 274
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 3 cut(s) 218, 224, 280
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 214, 236
AluBI AGCT 9 cut(s) 91, 131, 276, 328, 374, 429, 454, 458, 602
AluI AGCT 9 cut(s) 91, 131, 276, 328, 374, 429, 454, 458, 602
AlwI GGATC 2 cut(s) 194, 274
Aor13HI TCCGGA 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
Asp700I GAANNNNTTC 1 cut(s) 473
AspS9I GGNCC 1 cut(s) 542
AsuNHI GCTAGC 2 cut(s) 454, 575
AvaII GGWCC 1 cut(s) 542
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 110, 411
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BclI TGATCA 1 cut(s) 55
BfaI CTAG 3 cut(s) 273, 455, 576
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 542
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 2 cut(s) 458, 579
BpiI GAAGAC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 386
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 460
BseGI GGATG 4 cut(s) 422, 487, 504, 595
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 22
Bsp13I TCCGGA 1 cut(s) 460
Bsp1407I TGTACA 2 cut(s) 222, 278
Bsp143I GATC 3 cut(s) 55, 199, 266
BspCNI CTCAG 1 cut(s) 526
BspEI TCCGGA 1 cut(s) 460
BspHI TCATGA 1 cut(s) 553
BspOI GCTAGC 2 cut(s) 458, 579
BspPI GGATC 2 cut(s) 194, 274
BsrDI GCAATG 1 cut(s) 315
BsrGI TGTACA 2 cut(s) 222, 278
BsrI ACTGG 1 cut(s) 362
BssMI GATC 3 cut(s) 55, 199, 266
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 13, 287
BstAUI TGTACA 2 cut(s) 222, 278
BstC8I GCNNGC 4 cut(s) 423, 427, 456, 577
BstDEI CTNAG 4 cut(s) 75, 252, 319, 534
BstF5I GGATG 4 cut(s) 422, 487, 504, 595
BstKTI GATC 3 cut(s) 58, 202, 269
BstMBI GATC 3 cut(s) 55, 199, 266
BstMWI GCNNNNNNNGC 2 cut(s) 76, 418
BstNSI RCATGY 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 310
BtsCI GGATG 4 cut(s) 422, 487, 504, 595
Cac8I GCNNGC 4 cut(s) 423, 427, 456, 577
CciI TCATGA 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 542
CseI GACGC 1 cut(s) 568
Csp6I GTAC 3 cut(s) 217, 223, 279
CviAII CATG 5 cut(s) 44, 478, 517, 554, 595
CviQI GTAC 3 cut(s) 217, 223, 279
DdeI CTNAG 4 cut(s) 75, 252, 319, 534
DpnI GATC 3 cut(s) 57, 201, 268
DpnII GATC 3 cut(s) 55, 199, 266
DraI TTTAAA 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 542
FaeI CATG 5 cut(s) 47, 481, 520, 557, 598
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 176, 208
FaqI GGGAC 1 cut(s) 22
FatI CATG 5 cut(s) 43, 477, 516, 553, 594
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 4 cut(s) 429, 491, 494, 602
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 3 cut(s) 273, 455, 576
GluI GCNGC 1 cut(s) 132
HapII CCGG 1 cut(s) 461
HgaI GACGC 1 cut(s) 568
Hin1II CATG 5 cut(s) 47, 481, 520, 557, 598
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 2 cut(s) 372, 600
HinfI GANTC 3 cut(s) 139, 248, 383
HpaI GTTAAC 1 cut(s) 300
HpaII CCGG 1 cut(s) 461
Hpy166II GTNNAC 3 cut(s) 18, 225, 300
Hpy188I TCNGA 4 cut(s) 55, 154, 199, 335
Hpy188III TCNNGA 6 cut(s) 145, 203, 353, 403, 461, 554
Hpy8I GTNNAC 3 cut(s) 18, 225, 300
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 2 cut(s) 26, 445
HpyCH4III ACNGT 2 cut(s) 13, 287
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 418
HpyF3I CTNAG 4 cut(s) 75, 252, 319, 534
Hsp92II CATG 5 cut(s) 47, 481, 520, 557, 598
Kpn2I TCCGGA 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 55
KspAI GTTAAC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 55, 199, 266
LmnI GCTCC 3 cut(s) 128, 325, 463
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 57
MaeI CTAG 3 cut(s) 273, 455, 576
MaeIII GTNAC 1 cut(s) 500
MalI GATC 3 cut(s) 57, 201, 268
MboI GATC 3 cut(s) 55, 199, 266
MboII GAAGA 4 cut(s) 196, 281, 481, 542
MluCI AATT 2 cut(s) 122, 243
MlyI GAGTC 3 cut(s) 133, 257, 377
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 1 cut(s) 168
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 3 cut(s) 299, 449, 607
MspI CCGG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 76, 418
NdeII GATC 3 cut(s) 55, 199, 266
NheI GCTAGC 2 cut(s) 454, 575
NlaIII CATG 5 cut(s) 47, 481, 520, 557, 598
NspI RCATGY 1 cut(s) 47
PagI TCATGA 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 473
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 3 cut(s) 133, 256, 377
PpsI GAGTC 3 cut(s) 133, 256, 377
PspPI GGNCC 1 cut(s) 542
RsaI GTAC 3 cut(s) 218, 224, 280
RsaNI GTAC 3 cut(s) 217, 223, 279
SaqAI TTAA 3 cut(s) 299, 449, 607
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 3 cut(s) 55, 199, 266
Sau96I GGNCC 1 cut(s) 542
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 3 cut(s) 133, 257, 377
SfaNI GCATC 1 cut(s) 57
SinI GGWCC 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 2 cut(s) 122, 243
SspMI CTAG 3 cut(s) 273, 455, 576
TaaI ACNGT 2 cut(s) 13, 287
TaqI TCGA 1 cut(s) 240
TasI AATT 2 cut(s) 122, 243
TatI WGTACW 3 cut(s) 216, 222, 278
Tru1I TTAA 3 cut(s) 299, 449, 607
Tru9I TTAA 3 cut(s) 299, 449, 607
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 53, 466, 542
TspGWI ACGGA 2 cut(s) 429, 534
VpaK11BI GGWCC 1 cut(s) 542
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 3 cut(s) 273, 455, 576
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.