Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006345

Physical Location & Seq

Genomic Coordinates Forward (+)

15248976 .. 15250799

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGGGCACTGTGTTTGCTCCCGCTTTGGAAGGATTCAAGACTGTCAAGTCCGACCAAGGAGAGATTCTGACCAAGCCTTTCTTGGATGTCTGCAAGCAGATTTTACCTATTATAGATAAGTTTGGAGCTGCTATGACCCTTGTTAAATCAGACATCGGGGGTAACATAACGAGATTGGAATCTAAATATGAATCCAATCCTGCCGCATTCAACCTCTTGTACAGTTTGGTACAAGTTGAGATTGAAGCGAAAACAGCAAAAGCATCATCCAGCTGCACCAATGGTCTTCTTTGGTTGACAAGAGCAATGGATTTCTTGGTAGAGCTGTTCCGGAACTTACTGGAGCATCAAGATTGGGCAATGTCAGAGGCTTGTACAGATTCCTATGGCAAGACCCTGAAAAAATGGCATGGATGGATTGCTAGTTCAACTTTCAGTATTGCCATGAAGCTTGCTCCTGACAGAAAGAAGTTCATGGAGGTGATAGGAGGCAACGGCGATGTCATGGGTGATATAGAGAAATTCTGTGATGCCTTTACGCCTCTTCTTCAAGAGAATCACAAGTTTTTGACTAGTGTGGGCATGGATGATTTGAAGGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

203

Amino Acids

22.37

Weight (kDa)

5.45

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33470 AT2G33470
fragaria_vesca	FvH4_4g03970 FvH4_4g03970
malus_domestica	MD16G1221400.v1.1
prunus_persica	Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1
pyrus_communis	pycom13g18940 pycom16g18570
rosa_chinensis	RchiOBHm_Chr4g0394201
rosa_laevigata	RLG00000009714
rosa_multiflora	Rmu_co8216668.1_g000001 Rmu_sc0012185.1_g000001 Rmu_ssc0000473.1_g000028
rosa_roxburghii	Rroxscaffold_5G00339260
rosa_rugosa	Rorug03G0368600.1 Rorug03G0368700.1 Rorug03G0368800.1 Rorug03G0368900.1 Rorug03G0369000.1 Rorug03G0369100.1
rosa_samantha	Rh4AG050700 Rh4BG047600 Rh4CG054300 Rh4DG047300
rosa_wichuraiana	Rw4G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	2 cut(s)	24, 207
AcsI	RAATTY	1 cut(s)	524
AfaI	GTAC	3 cut(s)	224, 234, 379
AgsI	TTSAA	6 cut(s)	40, 214, 248, 432, 554, 598
AhlI	ACTAGT	1 cut(s)	575
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AloI	GAACNNNNNNTCC	2 cut(s)	412, 444
AluBI	AGCT	4 cut(s)	131, 276, 328, 454
AluI	AGCT	4 cut(s)	131, 276, 328, 454
Aor13HI	TCCGGA	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	131, 276
ApoI	RAATTY	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	496, 524
BaeGI	GKGCMC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	118, 263
BccI	CCATC	1 cut(s)	411
BceAI	ACGGC	1 cut(s)	514
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	2 cut(s)	426, 576
BisI	GCNGC	3 cut(s)	132, 207, 277
BlsI	GCNGC	3 cut(s)	133, 208, 278
BmsI	GCATC	3 cut(s)	275, 358, 523
BpiI	GAAGAC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	2 cut(s)	315, 369
Bse8I	GATNNNNATC	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	4 cut(s)	94, 269, 422, 595
BseJI	GATNNNNATC	1 cut(s)	181
BseMI	GCAATG	2 cut(s)	315, 369
BseNI	ACTGG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	118, 263
BsgI	GTGCAG	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	333
Bsp1407I	TGTACA	2 cut(s)	222, 377
BspACI	CCGC	2 cut(s)	24, 207
BspEI	TCCGGA	1 cut(s)	333
BsrDI	GCAATG	2 cut(s)	315, 369
BsrGI	TGTACA	2 cut(s)	222, 377
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	58
Bst4CI	ACNGT	3 cut(s)	13, 46, 227
Bst6I	CTCTTC	1 cut(s)	552
BstAUI	TGTACA	2 cut(s)	222, 377
BstC8I	GCNNGC	2 cut(s)	98, 456
BstF5I	GGATG	4 cut(s)	94, 269, 422, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	118, 263
BstV2I	GAAGAC	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	4 cut(s)	94, 269, 422, 595
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	2 cut(s)	98, 456
Csp6I	GTAC	3 cut(s)	223, 233, 378
CviAII	CATG	5 cut(s)	413, 448, 478, 508, 586
CviJI	RGCY	7 cut(s)	79, 131, 276, 328, 374, 454, 602
CviKI_1	RGCY	7 cut(s)	79, 131, 276, 328, 374, 454, 602
CviQI	GTAC	3 cut(s)	223, 233, 378
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	5 cut(s)	416, 451, 481, 511, 589
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	5 cut(s)	412, 447, 477, 507, 585
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	132, 207, 277
FokI	GGATG	4 cut(s)	101, 256, 429, 602
Fsp4HI	GCNGC	3 cut(s)	132, 207, 277
FspBI	CTAG	2 cut(s)	426, 576
GluI	GCNGC	3 cut(s)	132, 207, 277
GsuI	CTGGAG	1 cut(s)	365
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	5 cut(s)	416, 451, 481, 511, 589
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	6 cut(s)	36, 67, 182, 194, 383, 559
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	496, 524
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	4 cut(s)	55, 72, 154, 370
Hpy188III	TCNNGA	5 cut(s)	40, 334, 353, 461, 554
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	26, 592
HpyCH4III	ACNGT	3 cut(s)	13, 46, 227
HpyCH4V	TGCA	2 cut(s)	96, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92II	CATG	5 cut(s)	416, 451, 481, 511, 589
Kpn2I	TCCGGA	1 cut(s)	333
LmnI	GCTCC	4 cut(s)	25, 128, 346, 463
LpnPI	CCDG	6 cut(s)	216, 286, 329, 347, 413, 474
Lsp1109I	GCAGC	2 cut(s)	118, 263
LweI	GCATC	3 cut(s)	275, 358, 523
MaeI	CTAG	2 cut(s)	426, 576
MaeIII	GTNAC	1 cut(s)	164
MboII	GAAGA	3 cut(s)	281, 539, 542
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	227, 364, 475, 485, 555
MroI	TCCGGA	1 cut(s)	333
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	257
NlaIII	CATG	5 cut(s)	416, 451, 481, 511, 589
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	6 cut(s)	36, 67, 182, 194, 383, 559
PkrI	GCNGC	3 cut(s)	133, 208, 278
PvuII	CAGCTG	1 cut(s)	276
RsaI	GTAC	3 cut(s)	224, 234, 379
RsaNI	GTAC	3 cut(s)	223, 233, 378
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	132, 207, 277
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	7 cut(s)	112, 133, 219, 278, 330, 456, 486
SfaNI	GCATC	3 cut(s)	275, 358, 523
SmiMI	CAYNNNNRTG	1 cut(s)	482
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	2 cut(s)	24, 207
SspMI	CTAG	2 cut(s)	426, 576
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	13, 46, 227
TasI	AATT	1 cut(s)	524
TatI	WGTACW	2 cut(s)	222, 377
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	6 cut(s)	36, 67, 182, 194, 383, 559
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	2 cut(s)	131, 276
TspDTI	ATGAA	3 cut(s)	207, 464, 466
TspRI	CASTG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	2 cut(s)	426, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.