Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8216668.1

Orthogroup ID

OG0006345

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 432

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8216668.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

agattggagactaaatattcttccaatccttcggaattcgacctgttgtacagtttggtacgggttgaggttgaagccaagacagcaaaagcatcatccagctgcaccaatggtctgctatggttgacaagagcaatggacttcttgttggagttgtttcggaacttactggaacatcaggattggacaatgtctcaggcttgttcagattcctatggcaagaccctgaaacaatggcatggatggcttgctagttcaagtttcagtgtaatgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

92

Amino Acids

10.56

Weight (kDa)

6.09

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33470 AT2G33470
fragaria_vesca	FvH4_4g03970 FvH4_4g03970
malus_domestica	MD16G1221400.v1.1
prunus_persica	Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1
pyrus_communis	pycom13g18940 pycom16g18570
rosa_chinensis	RchiOBHm_Chr4g0394201
rosa_laevigata	RLG00000009714
rosa_multiflora	Rmu_co8216668.1_g000001 Rmu_sc0012185.1_g000001 Rmu_ssc0000473.1_g000028
rosa_roxburghii	Rroxscaffold_5G00339260
rosa_rugosa	Rorug03G0368600.1 Rorug03G0368700.1 Rorug03G0368800.1 Rorug03G0368900.1 Rorug03G0369000.1 Rorug03G0369100.1
rosa_samantha	Rh4AG050700 Rh4BG047600 Rh4CG054300 Rh4DG047300
rosa_wichuraiana	Rw4G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	35
AfaI	GTAC	2 cut(s)	50, 60
AgsI	TTSAA	2 cut(s)	74, 258
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	2, 198
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	2, 198
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
BmsI	GCATC	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	95, 248
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	2, 198
Bsp1407I	TGTACA	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	141
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	95, 248
BstMAI	GTCTC	2 cut(s)	2, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 244
BstV1I	GCAGC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	95, 248
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	49, 59
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	4 cut(s)	77, 102, 200, 247
CviKI_1	RGCY	4 cut(s)	77, 102, 200, 247
CviQI	GTAC	2 cut(s)	49, 59
DdeI	CTNAG	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	35
FaeI	CATG	1 cut(s)	242
FaiI	YATR	3 cut(s)	121, 216, 240
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	2 cut(s)	82, 255
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	34, 162, 208
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 244
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	242
LpnPI	CCDG	6 cut(s)	56, 112, 155, 164, 182, 239
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	252
MboII	GAAGA	1 cut(s)	12
MluCI	AATT	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	1 cut(s)	61
MspA1I	CMGCKG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	83, 244
NlaIII	CATG	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	209
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	102
RsaI	GTAC	2 cut(s)	50, 60
RsaNI	GTAC	2 cut(s)	49, 59
SatI	GCNGC	1 cut(s)	103
SetI	ASST	3 cut(s)	45, 72, 104
SfaNI	GCATC	1 cut(s)	101
Sse9I	AATT	1 cut(s)	35
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	35
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	209
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	102
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	35
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.