Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000473.1

Orthogroup ID

OG0006345

Physical Location & Seq

Genomic Coordinates Forward (+)

169124 .. 172204

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000473.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgagatctctgacagcctctttgggaacctccggcgaggtttttaggaaagtccggtcggcggcgactgcatgtgacctgattccgtcttcgactgatgactggaatcggcaaagttggccggaattcagaggccgtttcctgctttctatactcagatccaacaactgcactgaatctgaaaagatggaggggactgtgtttgctcctgctctggaaggaatgaagagtgtgaaatcagcagaaggggaaatgcagaccaagcctttcttggaagtctgcaagcagattttgcctgttatagagaagtttggagctgctatgactcttgttaaatcggatgttggtggtaatataacgagattggagactaaatattcttccaatccttcggaattcgacctgttgtacagtttggtacgggttgaggttgaagccaagacagcaaaagcatcatccagctgcaccaatggtctgctatggttgacaagagcaatggacttcttgttggagttgtttcggaacttactggaacatcaagattggacaatgtctcaggcttgttcagattcctatggcaagaccctgaaacaatggcatggatggcttgctagttcaagtttcagtattgccatgaagcttgctcctgacaggaagaagttcatggatgtgataggaggcaatggtgatatcatggctgatatagagaaattttgcactaccttttcgccgctgcttcaagagaatcacaagtttttggctagtgttggcctggatgatttgaaggcttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

264

Amino Acids

29.34

Weight (kDa)

6.35

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33470 AT2G33470
fragaria_vesca	FvH4_4g03970 FvH4_4g03970
malus_domestica	MD16G1221400.v1.1
prunus_persica	Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1
pyrus_communis	pycom13g18940 pycom16g18570
rosa_chinensis	RchiOBHm_Chr4g0394201
rosa_laevigata	RLG00000009714
rosa_multiflora	Rmu_co8216668.1_g000001 Rmu_sc0012185.1_g000001 Rmu_ssc0000473.1_g000028
rosa_roxburghii	Rroxscaffold_5G00339260
rosa_rugosa	Rorug03G0368600.1 Rorug03G0368700.1 Rorug03G0368800.1 Rorug03G0368900.1 Rorug03G0369000.1 Rorug03G0369100.1
rosa_samantha	Rh4AG050700 Rh4BG047600 Rh4CG054300 Rh4DG047300
rosa_wichuraiana	Rw4G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 731
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	3 cut(s)	125, 395, 710
AfaI	GTAC	2 cut(s)	410, 420
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	4 cut(s)	434, 618, 740, 784
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	3 cut(s)	317, 462, 640
AluI	AGCT	3 cut(s)	317, 462, 640
Alw26I	GTCTC	2 cut(s)	362, 558
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	3 cut(s)	119, 133, 769
ApeKI	GCWGC	3 cut(s)	317, 462, 733
ApoI	RAATTY	3 cut(s)	125, 395, 710
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	659
AsuHPI	GGTGA	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	304, 449, 720
BccI	CCATC	2 cut(s)	181, 597
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	362, 558
BfaI	CTAG	2 cut(s)	612, 762
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	5 cut(s)	63, 318, 463, 731, 734
BlsI	GCNGC	5 cut(s)	64, 319, 464, 732, 735
Bme1390I	CCNGG	1 cut(s)	773
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	773
BmsI	GCATC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	107, 534
Bse3DI	GCAATG	2 cut(s)	501, 688
BseBI	CCWGG	1 cut(s)	773
BseGI	GGATG	5 cut(s)	346, 455, 608, 673, 781
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	2 cut(s)	501, 688
BseMII	CTCAG	2 cut(s)	169, 569
BseNI	ACTGG	2 cut(s)	107, 534
BseXI	GCAGC	3 cut(s)	304, 449, 720
BsgI	GTGCAG	2 cut(s)	154, 448
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	121, 135, 771
BsiEI	CGRYCG	1 cut(s)	59
BsiSI	CCGG	3 cut(s)	33, 55, 122
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	362, 558
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	121, 135, 771
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	5, 158
BspACI	CCGC	2 cut(s)	62, 731
BspANI	GGCC	3 cut(s)	121, 135, 771
BspCNI	CTCAG	2 cut(s)	168, 568
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	153
BsrDI	GCAATG	2 cut(s)	501, 688
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	107, 534
BssMI	GATC	2 cut(s)	5, 158
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	2 cut(s)	199, 413
Bst6I	CTCTTC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstAUI	TGTACA	1 cut(s)	408
BstC8I	GCNNGC	3 cut(s)	284, 609, 642
BstDEI	CTNAG	2 cut(s)	155, 555
BstF5I	GGATG	5 cut(s)	346, 455, 608, 673, 781
BstKTI	GATC	2 cut(s)	8, 161
BstMAI	GTCTC	2 cut(s)	362, 558
BstMBI	GATC	2 cut(s)	5, 158
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 118, 262, 292, 443, 604
BstNI	CCWGG	1 cut(s)	773
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	771
BstV1I	GCAGC	3 cut(s)	304, 449, 720
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	5, 158
BstYI	RGATCY	2 cut(s)	5, 158
BsuRI	GGCC	3 cut(s)	121, 135, 771
BtsCI	GGATG	5 cut(s)	346, 455, 608, 673, 781
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	284, 609, 642
Csp6I	GTAC	2 cut(s)	409, 419
CviAII	CATG	5 cut(s)	72, 599, 634, 664, 694
CviQI	GTAC	2 cut(s)	409, 419
DdeI	CTNAG	2 cut(s)	155, 555
DpnI	GATC	2 cut(s)	7, 160
DpnII	GATC	2 cut(s)	5, 158
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	691
EcoRI	GAATTC	2 cut(s)	125, 395
EcoRII	CCWGG	1 cut(s)	771
EcoRV	GATATC	1 cut(s)	691
FaeI	CATG	5 cut(s)	75, 602, 637, 667, 697
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	5 cut(s)	71, 598, 633, 663, 693
Fnu4HI	GCNGC	5 cut(s)	63, 318, 463, 731, 734
FokI	GGATG	5 cut(s)	353, 442, 615, 680, 788
Fsp4HI	GCNGC	5 cut(s)	63, 318, 463, 731, 734
FspBI	CTAG	2 cut(s)	612, 762
GluI	GCNGC	5 cut(s)	63, 318, 463, 731, 734
HaeIII	GGCC	3 cut(s)	121, 135, 771
HapII	CCGG	3 cut(s)	33, 55, 122
Hin1II	CATG	5 cut(s)	75, 602, 637, 667, 697
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	6 cut(s)	82, 106, 176, 325, 569, 745
HpaII	CCGG	3 cut(s)	33, 55, 122
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	8 cut(s)	12, 131, 158, 181, 340, 394, 522, 568
Hpy188III	TCNNGA	4 cut(s)	215, 539, 647, 740
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	4 cut(s)	212, 239, 399, 778
HpyCH4III	ACNGT	2 cut(s)	199, 413
HpyCH4V	TGCA	6 cut(s)	71, 171, 256, 282, 465, 717
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 118, 262, 292, 443, 604
HpyF3I	CTNAG	2 cut(s)	155, 555
Hsp92II	CATG	5 cut(s)	75, 602, 637, 667, 697
Kzo9I	GATC	2 cut(s)	5, 158
LmnI	GCTCC	3 cut(s)	211, 314, 649
Lsp1109I	GCAGC	3 cut(s)	304, 449, 720
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	2 cut(s)	612, 762
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	7, 160
MboI	GATC	2 cut(s)	5, 158
MboII	GAAGA	4 cut(s)	81, 238, 372, 667
MflI	RGATCY	2 cut(s)	5, 158
MluCI	AATT	3 cut(s)	125, 395, 710
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	2 cut(s)	186, 489
MnlI	CCTC	7 cut(s)	28, 31, 40, 125, 184, 421, 671
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	2 cut(s)	462, 733
MspI	CCGG	3 cut(s)	33, 55, 122
MspR9I	CCNGG	1 cut(s)	773
MvaI	CCWGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	6 cut(s)	68, 118, 262, 292, 443, 604
NdeII	GATC	2 cut(s)	5, 158
NlaIII	CATG	5 cut(s)	75, 602, 637, 667, 697
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	5 cut(s)	82, 106, 176, 569, 745
PflFI	GACNNNGTC	1 cut(s)	550
PkrI	GCNGC	5 cut(s)	64, 319, 464, 732, 735
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	771
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	5, 158
PsyI	GACNNNGTC	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	462
RsaI	GTAC	2 cut(s)	410, 420
RsaNI	GTAC	2 cut(s)	409, 419
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	5 cut(s)	63, 318, 463, 731, 734
Sau3AI	GATC	2 cut(s)	5, 158
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	773
SetI	ASST	9 cut(s)	32, 42, 81, 319, 405, 432, 464, 642, 725
SfaNI	GCATC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	668
Sse9I	AATT	3 cut(s)	125, 395, 710
SsiI	CCGC	2 cut(s)	62, 731
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	2 cut(s)	612, 762
StyD4I	CCNGG	1 cut(s)	771
TaaI	ACNGT	2 cut(s)	199, 413
TaqI	TCGA	2 cut(s)	92, 399
TasI	AATT	3 cut(s)	125, 395, 710
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	2 cut(s)	65, 733
TfiI	GAWTC	5 cut(s)	82, 106, 176, 569, 745
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	3 cut(s)	317, 462, 733
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	4 cut(s)	239, 650, 652, 780
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	178
Tth111I	GACNNNGTC	1 cut(s)	550
XapI	RAATTY	3 cut(s)	125, 395, 710
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	2 cut(s)	612, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.