Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012185.1

Orthogroup ID

OG0006345

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1656

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012185.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgagatctctgacagcctctttgggaacctccggcgaggtttttaggaaagtccggtcagcggcgactgcatgtgacctgattccgtcttcgactgatgactggaatcggcaaagttggccggaattcagaggccgtcgtaaacagtcaaaattcccttctcttcttcaccaccaccaccatcttcaaacttttgagaatccgattctcggaaaacgcgcccaccccaatttcgcaaaaggtttcctgctttctatactcagatccaacaactgcattgaatctgaaaagatggaggggactgtgttcgctcctgctctggaaggaatgaagagtgtgaaatcagcagaaggggaaatgcagaccaagcctttcttggaagtctgcaagcatattttgcctgttatagagaagtttggagctgctatgactcttgttaaatcggatgttggtggtaatataacgagattggagactaaatattcttccaatccttcggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

167

Amino Acids

18.63

Weight (kDa)

9.4

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33470 AT2G33470
fragaria_vesca	FvH4_4g03970 FvH4_4g03970
malus_domestica	MD16G1221400.v1.1
prunus_persica	Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1
pyrus_communis	pycom13g18940 pycom16g18570
rosa_chinensis	RchiOBHm_Chr4g0394201
rosa_laevigata	RLG00000009714
rosa_multiflora	Rmu_co8216668.1_g000001 Rmu_sc0012185.1_g000001 Rmu_ssc0000473.1_g000028
rosa_roxburghii	Rroxscaffold_5G00339260
rosa_rugosa	Rorug03G0368600.1 Rorug03G0368700.1 Rorug03G0368800.1 Rorug03G0368900.1 Rorug03G0369000.1 Rorug03G0369100.1
rosa_samantha	Rh4AG050700 Rh4BG047600 Rh4CG054300 Rh4DG047300
rosa_wichuraiana	Rw4G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	125, 152
AfiI	CCNNNNNNNGG	2 cut(s)	61, 209
AgsI	TTSAA	2 cut(s)	188, 281
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	258
AoxI	GGCC	2 cut(s)	119, 133
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	2 cut(s)	125, 152
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	189, 286
BceAI	ACGGC	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	467
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	2 cut(s)	63, 423
BlsI	GCNGC	2 cut(s)	64, 424
BmiI	GGNNCC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 209
Bse1I	ACTGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	61, 209
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	121, 135
BsiSI	CCGG	3 cut(s)	33, 55, 122
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	61, 209
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	121, 135
Bsp143I	GATC	2 cut(s)	5, 263
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	121, 135
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	107
BssMI	GATC	2 cut(s)	5, 263
Bst4CI	ACNGT	2 cut(s)	147, 304
Bst6I	CTCTTC	2 cut(s)	168, 326
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	8, 266
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	5, 263
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 118, 367, 397
BstNSI	RCATGY	1 cut(s)	75
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	5, 263
BstYI	RGATCY	2 cut(s)	5, 263
BsuRI	GGCC	2 cut(s)	121, 135
BtsCI	GGATG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	221
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	5 cut(s)	17, 121, 135, 370, 422
CviKI_1	RGCY	5 cut(s)	17, 121, 135, 370, 422
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	7, 265
DpnII	GATC	2 cut(s)	5, 263
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	168, 326
EarI	CTCTTC	2 cut(s)	168, 326
EcoRI	GAATTC	1 cut(s)	125
FaeI	CATG	1 cut(s)	75
FaiI	YATR	6 cut(s)	73, 257, 393, 407, 428, 461
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	63, 423
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	2 cut(s)	63, 423
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	2 cut(s)	63, 423
HaeIII	GGCC	2 cut(s)	121, 135
HapII	CCGG	3 cut(s)	33, 55, 122
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	6 cut(s)	82, 106, 199, 205, 281, 430
HpaII	CCGG	3 cut(s)	33, 55, 122
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	8 cut(s)	12, 131, 204, 212, 263, 286, 445, 499
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	3 cut(s)	168, 317, 344
HpyCH4III	ACNGT	2 cut(s)	147, 304
HpyCH4V	TGCA	4 cut(s)	71, 276, 361, 387
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 118, 367, 397
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	75
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	5, 263
LmnI	GCTCC	2 cut(s)	316, 419
LpnPI	CCDG	9 cut(s)	46, 68, 88, 92, 135, 260, 305, 327, 414
Lsp1109I	GCAGC	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	7, 265
MboI	GATC	2 cut(s)	5, 263
MboII	GAAGA	6 cut(s)	81, 155, 158, 176, 343, 477
MflI	RGATCY	2 cut(s)	5, 263
MluCI	AATT	3 cut(s)	125, 152, 229
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	5 cut(s)	28, 31, 40, 125, 289
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	33, 55, 122
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	68, 118, 367, 397
NdeII	GATC	2 cut(s)	5, 263
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	75
PfeI	GAWTC	5 cut(s)	82, 106, 199, 205, 281
PkrI	GCNGC	2 cut(s)	64, 424
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	5, 263
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	63, 423
Sau3AI	GATC	2 cut(s)	5, 263
SchI	GAGTC	1 cut(s)	424
SetI	ASST	5 cut(s)	32, 42, 81, 244, 424
Sse9I	AATT	3 cut(s)	125, 152, 229
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	1 cut(s)	482
TaaI	ACNGT	2 cut(s)	147, 304
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	125, 152, 229
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	5 cut(s)	82, 106, 199, 205, 281
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	75
XapI	RAATTY	2 cut(s)	125, 152
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.