FvH4_4g03970

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006345
Physical Location & Seq
Forward (+)
3431718 .. 3434261
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03970.t1

Sequence Viewer

Length: 609 bp
ATGGAGGGGACTGTGTTTGCTCCGGCTTTGGAAGGAATGAAGAGTGTGAGATCACCCGAAGGTGAAATGCTTACCAAGCCTTTCTTGGAAGTCTGCAAGCAGATTTTGCCTGTTATAGAGAAGTTTGGAGCTGCTATGACCCTGGTTAAATCGGACGTGGGTGGTAACATCACGAGATTGGAAACCAAATATCTTTCCAATCCTGCCGAGTTCAACCTCTTGTACAGTTTGGTGCGGGTTGAGGTTGAGGCCAAGACGGCAAATGCGTCATCCAGCTGCACCAATGGTCTGCTATGGTTGACAAGAGCGATGGACTTCTTGTTAGAGTTGTTTCGGAACTTACTGGAGCATCAAGATTGGACTATGTCACAGGCTTGTTCAGATTCCTATGCCAAGACCTTGAAACAATGGCACGGATGGTTTGCTAGTTCAAGTTTCAGTGTTGCCATGAAGCTTGCTCCTGACAGGAAGAAGTTCATGGATGTGATAGGAGGCGATGGTGATATCATGGGTGATATAGAGAAATTTTGCACTAACTTTTCTCCCCTGCTTCAAGAGAATCACAAGTTTTTGGCTAGTGTTGGCCTGGATGATATGAAGGCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

203

Amino Acids

22.46

Weight (kDa)

5.45

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 24 - 164 5.1e-47 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 524
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 4 cut(s) 214, 403, 432, 554
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 2 cut(s) 141, 585
AluBI AGCT 3 cut(s) 131, 276, 454
AluI AGCT 3 cut(s) 131, 276, 454
AoxI GGCC 2 cut(s) 249, 583
ApeKI GCWGC 2 cut(s) 131, 276
ApoI RAATTY 1 cut(s) 524
Asp700I GAANNNNTTC 1 cut(s) 473
AsuHPI GGTGA 4 cut(s) 45, 74, 512, 524
BauI CACGAG 1 cut(s) 172
BbvI GCAGC 2 cut(s) 118, 263
BccI CCATC 3 cut(s) 304, 411, 491
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 2 cut(s) 143, 587
BfaI CTAG 2 cut(s) 426, 576
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 2 cut(s) 132, 277
BlsI GCNGC 2 cut(s) 133, 278
Bme1390I CCNGG 2 cut(s) 143, 587
BmgBI CACGTC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 143, 587
BmsI GCATC 1 cut(s) 358
BpmI CTGGAG 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 2 cut(s) 143, 587
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 4 cut(s) 269, 422, 487, 595
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 2 cut(s) 118, 263
BsgI GTGCAG 1 cut(s) 262
BshFI GGCC 2 cut(s) 251, 585
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 2 cut(s) 251, 585
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 1 cut(s) 235
BspANI GGCC 2 cut(s) 251, 585
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 172
Bst2UI CCWGG 2 cut(s) 143, 587
Bst4CI ACNGT 2 cut(s) 13, 227
Bst6I CTCTTC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 98, 456
BstF5I GGATG 4 cut(s) 269, 422, 487, 595
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 3 cut(s) 76, 106, 257
BstNI CCWGG 2 cut(s) 143, 587
BstSCI CCNGG 2 cut(s) 141, 585
BstV1I GCAGC 2 cut(s) 118, 263
BsuRI GGCC 2 cut(s) 251, 585
BtgZI GCGATG 2 cut(s) 323, 510
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 4 cut(s) 269, 422, 487, 595
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 98, 456
CseI GACGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 223
CviAII CATG 3 cut(s) 448, 478, 508
CviQI GTAC 1 cut(s) 223
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 141, 585
EcoRV GATATC 1 cut(s) 505
FaeI CATG 3 cut(s) 451, 481, 511
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 447, 477, 507
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 132, 277
FokI GGATG 4 cut(s) 256, 429, 494, 602
Fsp4HI GCNGC 2 cut(s) 132, 277
FspBI CTAG 2 cut(s) 426, 576
GluI GCNGC 2 cut(s) 132, 277
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 2 cut(s) 251, 585
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 255
Hin1II CATG 3 cut(s) 451, 481, 511
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 2 cut(s) 383, 559
HpaII CCGG 1 cut(s) 23
HphI GGTGA 4 cut(s) 45, 74, 512, 524
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 3 cut(s) 154, 336, 382
Hpy188III TCNNGA 4 cut(s) 172, 353, 461, 554
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 3 cut(s) 26, 53, 592
HpyCH4III ACNGT 2 cut(s) 13, 227
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 96, 279, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 106, 257
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 3 cut(s) 451, 481, 511
Kzo9I GATC 1 cut(s) 50
LmnI GCTCC 4 cut(s) 25, 128, 346, 463
Lsp1109I GCAGC 2 cut(s) 118, 263
LweI GCATC 1 cut(s) 358
MaeI CTAG 2 cut(s) 426, 576
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 164, 366
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 2 cut(s) 52, 481
MluCI AATT 1 cut(s) 524
MnlI CCTC 4 cut(s) 227, 235, 241, 485
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 143, 587
MvaI CCWGG 2 cut(s) 143, 587
MwoI GCNNNNNNNGC 3 cut(s) 76, 106, 257
NdeII GATC 1 cut(s) 50
NlaIII CATG 3 cut(s) 451, 481, 511
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 383, 559
PflFI GACNNNGTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 133, 278
Psp6I CCWGG 2 cut(s) 141, 585
PspGI CCWGG 2 cut(s) 141, 585
PsyI GACNNNGTC 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 276
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 132, 277
Sau3AI GATC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 143, 587
SetI ASST 8 cut(s) 64, 133, 159, 219, 246, 278, 401, 456
SfaNI GCATC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 1 cut(s) 524
SsiI CCGC 1 cut(s) 235
SspMI CTAG 2 cut(s) 426, 576
StyD4I CCNGG 2 cut(s) 141, 585
TaaI ACNGT 2 cut(s) 13, 227
TaiI ACGT 1 cut(s) 159
TasI AATT 1 cut(s) 524
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 2 cut(s) 383, 559
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 2 cut(s) 131, 276
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 4 cut(s) 53, 464, 466, 594
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 1 cut(s) 445
Tth111I GACNNNGTC 1 cut(s) 364
XapI RAATTY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 2 cut(s) 426, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.