Rh4BG047600

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006345
Physical Location & Seq
Forward (+)
8666495 .. 8669274
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG047600.1

Sequence Viewer

Length: 453 bp
ATGGATGGGACTGTGTTTGCTCCTGCTCTGGAAGGAATGAAGAGTGTGAAATCAGCAGAAGGCGAAATGCAGACCAAGCCTTTCTTGGAAGTCTGCAAGCATATTTTGCCTGTTATAGAGAAGTTTGGAGCTGCTATGACTCTTGTTAAATCGGATGTTGGTGGTAATATAACGAGATTGGAGACTAAATATTCTTCCAATCCTTCGGAATTCGACCTGTTGTACAGTTTGGTACGGGTTGAGGTTGAAGCCAAGACAGCAAAAGCATCATCCAGCTGCACCAATGGTCTGCTATGGTTGACAAGAGCAATGGACTTCTTGTTGGAGTTGTTTCGGAACTTACTGGAACATCAAGATTGGACAATGTCTCAGGCTTGTTCAGATTCCTATGGCAAGACCCTGAAACAATGGCATGGATGGCTTGCTAGTTCAAGTTTCAGTGTACAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

150

Amino Acids

16.69

Weight (kDa)

5.91

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 24 - 148 4.2e-41 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 3 cut(s) 224, 234, 444
AgsI TTSAA 2 cut(s) 248, 432
AluBI AGCT 3 cut(s) 131, 276, 448
AluI AGCT 3 cut(s) 131, 276, 448
Alw26I GTCTC 2 cut(s) 176, 372
ApeKI GCWGC 2 cut(s) 131, 276
ApoI RAATTY 1 cut(s) 209
BbvI GCAGC 2 cut(s) 118, 263
BccI CCATC 1 cut(s) 411
BcoDI GTCTC 2 cut(s) 176, 372
BfaI CTAG 1 cut(s) 426
BisI GCNGC 2 cut(s) 132, 277
BlsI GCNGC 2 cut(s) 133, 278
BmsI GCATC 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 315
BseGI GGATG 4 cut(s) 10, 160, 269, 422
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 2 cut(s) 118, 263
BsgI GTGCAG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 176, 372
BsmFI GGGAC 1 cut(s) 22
Bsp1407I TGTACA 2 cut(s) 222, 442
BspCNI CTCAG 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 315
BsrGI TGTACA 2 cut(s) 222, 442
BsrI ACTGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 13, 227
Bst6I CTCTTC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 106
BstAUI TGTACA 2 cut(s) 222, 442
BstC8I GCNNGC 2 cut(s) 98, 423
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 4 cut(s) 10, 160, 269, 422
BstMAI GTCTC 2 cut(s) 176, 372
BstMWI GCNNNNNNNGC 4 cut(s) 76, 106, 257, 418
BstV1I GCAGC 2 cut(s) 118, 263
BtsCI GGATG 4 cut(s) 10, 160, 269, 422
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 98, 423
Csp6I GTAC 3 cut(s) 223, 233, 443
CviAII CATG 1 cut(s) 413
CviJI RGCY 7 cut(s) 79, 131, 251, 276, 374, 421, 448
CviKI_1 RGCY 7 cut(s) 79, 131, 251, 276, 374, 421, 448
CviQI GTAC 3 cut(s) 223, 233, 443
DdeI CTNAG 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 209
FaeI CATG 1 cut(s) 416
FaiI YATR 7 cut(s) 102, 116, 137, 170, 295, 390, 414
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 132, 277
FokI GGATG 4 cut(s) 17, 167, 256, 429
Fsp4HI GCNGC 2 cut(s) 132, 277
FspBI CTAG 1 cut(s) 426
GluI GCNGC 2 cut(s) 132, 277
Hin1II CATG 1 cut(s) 416
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 2 cut(s) 139, 383
Hpy166II GTNNAC 2 cut(s) 300, 443
Hpy188I TCNGA 4 cut(s) 154, 208, 336, 382
Hpy188III TCNNGA 2 cut(s) 29, 353
Hpy8I GTNNAC 2 cut(s) 300, 443
HpyAV CCTTC 3 cut(s) 26, 53, 213
HpyCH4III ACNGT 2 cut(s) 13, 227
HpyCH4V TGCA 3 cut(s) 70, 96, 279
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 106, 257, 418
HpyF3I CTNAG 1 cut(s) 369
Hsp92II CATG 1 cut(s) 416
LmnI GCTCC 2 cut(s) 25, 128
LpnPI CCDG 8 cut(s) 14, 36, 123, 230, 286, 329, 356, 413
Lsp1109I GCAGC 2 cut(s) 118, 263
LweI GCATC 1 cut(s) 275
MaeI CTAG 1 cut(s) 426
MboII GAAGA 2 cut(s) 52, 186
MluCI AATT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 1 cut(s) 235
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 276
MwoI GCNNNNNNNGC 4 cut(s) 76, 106, 257, 418
NlaIII CATG 1 cut(s) 416
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 133, 278
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 276
RsaI GTAC 3 cut(s) 224, 234, 444
RsaNI GTAC 3 cut(s) 223, 233, 443
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 132, 277
SchI GAGTC 1 cut(s) 133
SetI ASST 5 cut(s) 133, 219, 246, 278, 450
SfaNI GCATC 1 cut(s) 275
Sse9I AATT 1 cut(s) 209
SspI AATATT 1 cut(s) 191
SspMI CTAG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 13, 227
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 209
TatI WGTACW 2 cut(s) 222, 442
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 445
TseI GCWGC 2 cut(s) 131, 276
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 1 cut(s) 445
Tth111I GACNNNGTC 1 cut(s) 364
XapI RAATTY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.