Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006345

Physical Location & Seq

Genomic Coordinates Forward (+)

2981459 .. 2985099

Gene Structure 3641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G041700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGGGGACTGTGTTCGCTCCTGCCTTGGAAGGATTCAAGACTGTCAAGTCTGATGGAGGAGAGATTCTGACCAAGCCTTTCTTGGAAGTGTGCAAGCAGATTCTGCCTGTTATAGATAAGTTTGGAGCTGCTATGACACTTGTTAAATCGGACATAGGCGGTAATATAACGAGATTGGAATCTAAATATTCATCGAATCCTTCCAAGTTCAACTACTTGTACAGCTTGGTGCAACTTGAGGTTGAAACAAAAACTGCAAAAGCATCATCCAGCTGCACCAATGGTCTTCTTTGGCTGACAAGAGCCATGGATTTCTTGGTGGAGCTGTTTCGGAACTTACTAGATCATCCAGATTGGACAATGTCACAGGCTTGTACAGATTCCTATGGCAAGACCCTGAAAAAATGGCATGGATGGCTTGCTAGTTCAAGTTTCAGTGTTGCCATGAAGCTTGCTCCTGACAGGAAGAAGTTCATGGAGGTGATAGGAGGCAATGGTGATATCATGGGTGATATAGATAAATTTTGCACTACCTTTACGCCTCTGCTTAAAGAGAATCACAAGTTTTTGGCTAGTGTTGGCATGGATGAATTGAAGGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

203

Amino Acids

22.37

Weight (kDa)

7.63

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33470 AT2G33470
fragaria_vesca	FvH4_4g03970 FvH4_4g03970
malus_domestica	MD16G1221400.v1.1
prunus_persica	Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1 Prupe.1G041700_v2.0.a1
pyrus_communis	pycom13g18940 pycom16g18570
rosa_chinensis	RchiOBHm_Chr4g0394201
rosa_laevigata	RLG00000009714
rosa_multiflora	Rmu_co8216668.1_g000001 Rmu_sc0012185.1_g000001 Rmu_ssc0000473.1_g000028
rosa_roxburghii	Rroxscaffold_5G00339260
rosa_rugosa	Rorug03G0368600.1 Rorug03G0368700.1 Rorug03G0368800.1 Rorug03G0368900.1 Rorug03G0369000.1 Rorug03G0369100.1
rosa_samantha	Rh4AG050700 Rh4BG047600 Rh4CG054300 Rh4DG047300
rosa_wichuraiana	Rw4G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AciI	CCGC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	524
AfaI	GTAC	2 cut(s)	224, 379
AgsI	TTSAA	5 cut(s)	40, 214, 248, 432, 598
AluBI	AGCT	5 cut(s)	131, 228, 276, 328, 454
AluI	AGCT	5 cut(s)	131, 228, 276, 328, 454
AlwNI	CAGNNNCTG	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	131, 276
ApoI	RAATTY	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	473
AsuHPI	GGTGA	3 cut(s)	496, 512, 524
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	118, 263
BccI	CCATC	2 cut(s)	50, 411
BfaI	CTAG	3 cut(s)	344, 426, 576
BisI	GCNGC	2 cut(s)	132, 277
BlsI	GCNGC	2 cut(s)	133, 278
BmsI	GCATC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	27, 309
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	27, 309
BseGI	GGATG	4 cut(s)	269, 349, 422, 595
BseJI	GATNNNNATC	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	118, 263
BsgI	GTGCAG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
Bsp1407I	TGTACA	2 cut(s)	222, 377
Bsp143I	GATC	1 cut(s)	346
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	605
BsrDI	GCAATG	1 cut(s)	502
BsrGI	TGTACA	2 cut(s)	222, 377
BssECI	CCNNGG	2 cut(s)	27, 309
BssMI	GATC	1 cut(s)	346
BssT1I	CCWWGG	2 cut(s)	27, 309
Bst4CI	ACNGT	2 cut(s)	13, 46
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstAUI	TGTACA	2 cut(s)	222, 377
BstC8I	GCNNGC	3 cut(s)	98, 423, 456
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	269, 349, 422, 595
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 418
BstV1I	GCAGC	2 cut(s)	118, 263
BstV2I	GAAGAC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	269, 349, 422, 595
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	98, 423, 456
CaiI	CAGNNNCTG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	223, 378
CviAII	CATG	7 cut(s)	310, 413, 448, 478, 508, 586, 606
CviQI	GTAC	2 cut(s)	223, 378
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	27, 309
Eco32I	GATATC	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	27, 309
ErhI	CCWWGG	2 cut(s)	27, 309
FaeI	CATG	7 cut(s)	313, 416, 451, 481, 511, 589, 609
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	7 cut(s)	309, 412, 447, 477, 507, 585, 605
Fnu4HI	GCNGC	2 cut(s)	132, 277
FokI	GGATG	4 cut(s)	256, 336, 429, 602
Fsp4HI	GCNGC	2 cut(s)	132, 277
FspBI	CTAG	3 cut(s)	344, 426, 576
GluI	GCNGC	2 cut(s)	132, 277
Hin1II	CATG	7 cut(s)	313, 416, 451, 481, 511, 589, 609
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	7 cut(s)	36, 67, 103, 182, 199, 383, 559
HphI	GGTGA	3 cut(s)	496, 512, 524
Hpy188I	TCNGA	4 cut(s)	55, 72, 154, 336
Hpy188III	TCNNGA	4 cut(s)	40, 353, 461, 606
HpyAV	CCTTC	3 cut(s)	26, 213, 592
HpyCH4III	ACNGT	2 cut(s)	13, 46
HpyCH4V	TGCA	5 cut(s)	96, 235, 260, 279, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 418
Hsp92II	CATG	7 cut(s)	313, 416, 451, 481, 511, 589, 609
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	4 cut(s)	25, 128, 325, 463
LpnPI	CCDG	8 cut(s)	36, 123, 286, 356, 366, 413, 451, 474
Lsp1109I	GCAGC	2 cut(s)	118, 263
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	3 cut(s)	344, 426, 576
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	2 cut(s)	281, 481
MluCI	AATT	2 cut(s)	524, 593
MnlI	CCTC	5 cut(s)	53, 235, 475, 485, 555
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	2 cut(s)	147, 552
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	106, 418
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	7 cut(s)	313, 416, 451, 481, 511, 589, 609
NmuCI	GTSAC	1 cut(s)	366
PagI	TCATGA	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	7 cut(s)	36, 67, 103, 182, 199, 383, 559
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	133, 278
PstNI	CAGNNNCTG	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	276
RsaI	GTAC	2 cut(s)	224, 379
RsaNI	GTAC	2 cut(s)	223, 378
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	147, 552
SatI	GCNGC	2 cut(s)	132, 277
Sau3AI	GATC	1 cut(s)	346
SetI	ASST	8 cut(s)	133, 230, 246, 278, 330, 456, 486, 539
SfaNI	GCATC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	524, 593
SsiI	CCGC	1 cut(s)	162
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	3 cut(s)	344, 426, 576
StyI	CCWWGG	2 cut(s)	27, 309
TaaI	ACNGT	2 cut(s)	13, 46
TaqI	TCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	524, 593
TatI	WGTACW	2 cut(s)	222, 377
TfiI	GAWTC	7 cut(s)	36, 67, 103, 182, 199, 383, 559
Tru1I	TTAA	2 cut(s)	147, 552
Tru9I	TTAA	2 cut(s)	147, 552
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	2 cut(s)	131, 276
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	5 cut(s)	183, 464, 466, 594, 606
TspRI	CASTG	1 cut(s)	445
Tth111I	GACNNNGTC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	2 cut(s)	82, 316
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	3 cut(s)	344, 426, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.