AT2G33610
MYB Family

SWI SNF complex subunit SWI3B-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14228972 .. 14231408
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33610.1

Sequence Viewer

Length: 1410 bp
ATGGCCATGAAAGCTCCCGATCCCGGCGGATCTGGGGAAATTCTCCCGAGCACTCCCTCTCTTTCCGAAACTACGTCTGGAGGCGCCGCAGCAGCTTCTAAGTCGGCTCAATTGCCGTCTTCTTCTTCCGATATCGATAATATTCACGTACCTAGCTACTCCAGTTGGTTTTCATGGACCGACATTAACGATTGCGAGGTCCGGTCACTGCCGGAATTTTTCGATTCGAGATCTTCATCCAAAAACCCTAAGTTTTATCTCTACTTGAGGAACTCGATTATTAAGCAGTACAGAGACGACCATCCTCGGAAGATTAGTTTCACTGACGTTCGGAGAACTCTCGTCAGTGATGTTGTCTCTATTCGTCGCGTCTTTGATTTCCTCGATTCATGGGGACTTATCAACTATAATAGCTCCGCCTCTGCTAAGCCGCTCAAGTGGGAAGAAAAAGAGGCCGGAAAATCCGCCGGAGATGCTGCTTCTGAGCCAGCCACAACTGTCAAAGAAACTGCCAAGAGAAACTGCAATGGCTGCAAAGCAATTTGCAGCATAGCTTGTTTCGCCTGTGATAAGTATGACTTGACATTGTGTGCGAGGTGCTATGTTCGTAGTAATTATCGTGTTGGTATTAACTCCTCGGAGTTTAAACGAGTTGAGATTAGTGAGGAGTCAAAGCCAGAGTGGTCTGATAAGGAAATTCTGCTGCTGCTGGAAGCTGTTATGCACTATGGAGATGATTGGAAGAAGGTTGCATCGCATGTTATTGGTAGAACGGAGAAGGATTGTGTTTCTCAGTTTGTCAAGCTTCCGTTTGGGGAACAGTTTGTAAAAGAGTCTGACTCTGAGGATGGTTTAGAGATGTTTGATCAGATCAAGGACTCTGATATTCCTGAATCTGAAGGAATAGATAAAGACGGTTCTTCTCCCAACAAGCGGATCAAATTAACACCTCTTGCAGATGCAAGCAACCCAATAATGGCTCAGGCTGCTTTTCTTTCAGCTTTGGCTGGCACAAATGTTGCAGAAGCAGCAGCTCGAGCGGCAGTGAGAGCTTTATCTGATGTAGACTACGAGGCTGACAAAAACGCCAGTAGAGACCCAAATCGACAAGATGCCAATGCTGCATCGAGTGGTGAAACCACTAGAAACGAATCTGAAAGAGCTTGGGCAGATGCAAAGTCTTTAATTGAGAAGGAAGAGCATGAGGTAGAAGGAGCAATCAAAGAGACTGTTGAAGTTGAGATGAAGAAGATCCGAGATAGGATTGTTCATTTCGAGAAATTGGATTTGGAAATGGAGAGAAGCCGGAAACAATTGGAGGAGGTGAGGAATCTGCTTTTCGTTGATCAATTAAACATTTTCTTCCACACCAGAAAAGCCCGGAAAACTGAAGATAGAATAGAGTGTTAG

Protein Analysis

469

Amino Acids

52.41

Weight (kDa)

5.25

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 58 - 136 7.2e-21 SWIRM domain
Myb_DNA-binding PF00249 225 - 269 2e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 228 - 268 3.5e-06 Myb-like DNA-binding domain
SWIRM-assoc_1 PF16495 390 - 462 1.4e-07 SWIRM-associated region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccBSI CCGCTC 2 cut(s) 433, 1040
AccI GTMKAC 1 cut(s) 1065
AccII CGCG 1 cut(s) 369
AciI CCGC 7 cut(s) 27, 87, 417, 431, 465, 934, 1040
AclWI GGATC 4 cut(s) 14, 37, 944, 1246
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 39, 215, 696
AcuI CTGAAG 2 cut(s) 918, 1410
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 150, 290
AfiI CCNNNNNNNGG 3 cut(s) 23, 933, 976
AgsI TTSAA 1 cut(s) 1235
AjuI GAANNNNNNNTTGG 2 cut(s) 1271, 1303
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 4 cut(s) 288, 361, 1089, 1220
AlwI GGATC 4 cut(s) 14, 37, 944, 1246
Ama87I CYCGRG 2 cut(s) 46, 1035
AoxI GGCC 2 cut(s) 3, 453
ApoI RAATTY 3 cut(s) 39, 215, 696
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 177, 199
AsuC2I CCSGG 2 cut(s) 24, 1381
AsuHPI GGTGA 2 cut(s) 1145, 1336
AvaI CYCGRG 2 cut(s) 46, 1035
AvaII GGWCC 2 cut(s) 177, 199
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 53
BccI CCATC 2 cut(s) 309, 842
BceAI ACGGC 1 cut(s) 100
BclI TGATCA 2 cut(s) 865, 1345
BcnI CCSGG 2 cut(s) 24, 1381
BcoDI GTCTC 4 cut(s) 288, 361, 1089, 1220
BfaI CTAG 2 cut(s) 153, 1143
BfoI RGCGCY 1 cut(s) 87
BglII AGATCT 1 cut(s) 230
BlpI GCTNAGC 1 cut(s) 426
Bme1390I CCNGG 2 cut(s) 24, 1381
Bme18I GGWCC 2 cut(s) 177, 199
BmeT110I CYCGRG 2 cut(s) 46, 1035
BmgT120I GGNCC 2 cut(s) 177, 199
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 24, 1381
BmsI GCATC 6 cut(s) 463, 761, 949, 1102, 1133, 1162
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 824, 856
BpmI CTGGAG 2 cut(s) 99, 145
Bpu10I CCTNAGC 1 cut(s) 981
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 286, 419
BpuMI CCSGG 2 cut(s) 24, 1381
Bsa29I ATCGAT 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 1089
BsaJI CCNNGG 2 cut(s) 305, 636
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 933, 976
Bse1I ACTGG 2 cut(s) 162, 1089
Bse3DI GCAATG 1 cut(s) 532
Bse8I GATNNNNATC 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 305, 636
BseGI GGATG 3 cut(s) 236, 301, 853
BseJI GATNNNNATC 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 23, 933, 976
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 4 cut(s) 474, 806, 834, 995
BseNI ACTGG 2 cut(s) 162, 1089
BseRI GAGGAG 3 cut(s) 625, 680, 1334
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 5, 455
BshNI GGYRCC 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 53
BsiHKCI CYCGRG 2 cut(s) 46, 1035
BsiSI CCGG 7 cut(s) 24, 202, 212, 456, 468, 1306, 1381
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 23, 933, 976
BsmAI GTCTC 4 cut(s) 288, 361, 1089, 1220
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 2 cut(s) 5, 455
Bso31I GGTCTC 1 cut(s) 1089
BsoBI CYCGRG 2 cut(s) 46, 1035
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 8 cut(s) 19, 29, 230, 865, 870, 936, 1251, 1345
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 7 cut(s) 27, 87, 417, 431, 465, 934, 1040
BspANI GGCC 2 cut(s) 5, 455
BspCNI CTCAG 4 cut(s) 475, 805, 835, 994
BspDI ATCGAT 1 cut(s) 135
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 4 cut(s) 14, 37, 944, 1246
BspQI GCTCTTC 1 cut(s) 1191
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 1089
BsrBI CCGCTC 2 cut(s) 433, 1040
BsrDI GCAATG 1 cut(s) 532
BsrI ACTGG 2 cut(s) 162, 1089
BssECI CCNNGG 2 cut(s) 305, 636
BssMI GATC 8 cut(s) 19, 29, 230, 865, 870, 936, 1251, 1345
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 4 cut(s) 499, 822, 917, 1231
Bst6I CTCTTC 1 cut(s) 1191
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 531
BstBAI YACGTR 1 cut(s) 148
BstC8I GCNNGC 3 cut(s) 489, 964, 1009
BstDEI CTNAG 7 cut(s) 99, 249, 426, 483, 792, 843, 981
BstF5I GGATG 3 cut(s) 236, 301, 853
BstFNI CGCG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 8 cut(s) 22, 32, 233, 868, 873, 939, 1254, 1348
BstMAI GTCTC 4 cut(s) 288, 361, 1089, 1220
BstMBI GATC 8 cut(s) 19, 29, 230, 865, 870, 936, 1251, 1345
BstNSI RCATGY 1 cut(s) 761
BstSCI CCNGG 2 cut(s) 22, 1379
BstUI CGCG 1 cut(s) 369
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 3 cut(s) 29, 230, 1251
BstYI RGATCY 3 cut(s) 29, 230, 1251
Bsu15I ATCGAT 1 cut(s) 135
BsuRI GGCC 2 cut(s) 5, 455
BsuTUI ATCGAT 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 3 cut(s) 236, 301, 853
BtsI GCAGTG 2 cut(s) 206, 1050
BtsIMutI CAGTG 4 cut(s) 206, 321, 352, 1050
Cac8I GCNNGC 3 cut(s) 489, 964, 1009
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 177, 199
ClaI ATCGAT 1 cut(s) 135
CseI GACGC 1 cut(s) 358
Csp6I GTAC 2 cut(s) 149, 289
CviAII CATG 5 cut(s) 7, 174, 390, 758, 1202
CviQI GTAC 2 cut(s) 149, 289
DdeI CTNAG 7 cut(s) 99, 249, 426, 483, 792, 843, 981
DinI GGCGCC 1 cut(s) 85
DpnI GATC 8 cut(s) 21, 31, 232, 867, 872, 938, 1253, 1347
DpnII GATC 8 cut(s) 19, 29, 230, 865, 870, 936, 1251, 1345
DraI TTTAAA 1 cut(s) 646
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1191
EarI CTCTTC 1 cut(s) 1191
EciI GGCGGA 3 cut(s) 42, 406, 454
Eco31I GGTCTC 1 cut(s) 1089
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 177, 199
Eco57I CTGAAG 2 cut(s) 918, 1410
Eco88I CYCGRG 2 cut(s) 46, 1035
EcoRV GATATC 1 cut(s) 133
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 5 cut(s) 10, 177, 393, 761, 1205
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 408
FatI CATG 5 cut(s) 6, 173, 389, 757, 1201
FbaI TGATCA 2 cut(s) 865, 1345
FblI GTMKAC 1 cut(s) 1065
FokI GGATG 3 cut(s) 223, 288, 860
FspBI CTAG 2 cut(s) 153, 1143
GlaI GCGC 1 cut(s) 85
GsuI CTGGAG 2 cut(s) 99, 145
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 5, 455
HapII CCGG 7 cut(s) 24, 202, 212, 456, 468, 1306, 1381
HgaI GACGC 1 cut(s) 358
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 5 cut(s) 10, 177, 393, 761, 1205
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 803
HinfI GANTC 9 cut(s) 224, 386, 668, 833, 839, 878, 893, 1151, 1330
HpaII CCGG 7 cut(s) 24, 202, 212, 456, 468, 1306, 1381
HphI GGTGA 2 cut(s) 1145, 1336
Hpy166II GTNNAC 1 cut(s) 1066
Hpy188III TCNNGA 6 cut(s) 17, 46, 78, 228, 890, 1276
Hpy8I GTNNAC 1 cut(s) 1066
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 5 cut(s) 739, 772, 893, 1186, 1205
HpyCH4III ACNGT 4 cut(s) 499, 822, 917, 1231
HpyCH4IV ACGT 3 cut(s) 74, 147, 327
HpyF3I CTNAG 7 cut(s) 99, 249, 426, 483, 792, 843, 981
HpySE526I ACGT 3 cut(s) 74, 147, 327
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 5 cut(s) 10, 177, 393, 761, 1205
HspAI GCGC 1 cut(s) 84
KasI GGCGCC 1 cut(s) 83
Ksp22I TGATCA 2 cut(s) 865, 1345
Kzo9I GATC 8 cut(s) 19, 29, 230, 865, 870, 936, 1251, 1345
LguI GCTCTTC 1 cut(s) 1191
LmnI GCTCC 3 cut(s) 19, 419, 1214
LweI GCATC 6 cut(s) 463, 761, 949, 1102, 1133, 1162
MaeI CTAG 2 cut(s) 153, 1143
MaeII ACGT 3 cut(s) 74, 147, 327
MaeIII GTNAC 1 cut(s) 204
MalI GATC 8 cut(s) 21, 31, 232, 867, 872, 938, 1253, 1347
MbiI CCGCTC 2 cut(s) 433, 1040
MboI GATC 8 cut(s) 19, 29, 230, 865, 870, 936, 1251, 1345
MfeI CAATTG 2 cut(s) 110, 1313
MflI RGATCY 3 cut(s) 29, 230, 1251
MhlI GDGCHC 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 4 cut(s) 677, 833, 842, 872
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 186, 282, 630, 645, 944, 1184, 1352
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 7 cut(s) 24, 202, 212, 456, 468, 1306, 1381
MspR9I CCNGG 2 cut(s) 24, 1381
MssI GTTTAAAC 1 cut(s) 646
MunI CAATTG 2 cut(s) 110, 1313
MvnI CGCG 1 cut(s) 369
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 2 cut(s) 24, 1381
NdeII GATC 8 cut(s) 19, 29, 230, 865, 870, 936, 1251, 1345
NlaIII CATG 5 cut(s) 10, 177, 393, 761, 1205
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 204
NspI RCATGY 1 cut(s) 761
PaeR7I CTCGAG 1 cut(s) 1035
PciSI GCTCTTC 1 cut(s) 1191
PfeI GAWTC 5 cut(s) 224, 386, 893, 1151, 1330
PleI GAGTC 4 cut(s) 676, 833, 841, 872
PluTI GGCGCC 1 cut(s) 87
PmeI GTTTAAAC 1 cut(s) 646
PpsI GAGTC 4 cut(s) 676, 833, 841, 872
Ppu21I YACGTR 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 177, 199
PspXI VCTCGAGB 1 cut(s) 1035
PsuI RGATCY 3 cut(s) 29, 230, 1251
RsaI GTAC 2 cut(s) 150, 290
RsaNI GTAC 2 cut(s) 149, 289
SapI GCTCTTC 1 cut(s) 1191
SaqAI TTAA 7 cut(s) 186, 282, 630, 645, 944, 1184, 1352
Sau3AI GATC 8 cut(s) 19, 29, 230, 865, 870, 936, 1251, 1345
Sau96I GGNCC 2 cut(s) 177, 199
SchI GAGTC 4 cut(s) 677, 833, 842, 872
ScrFI CCNGG 2 cut(s) 24, 1381
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 6 cut(s) 463, 761, 949, 1102, 1133, 1162
SfoI GGCGCC 1 cut(s) 85
Sfr274I CTCGAG 1 cut(s) 1035
SinI GGWCC 2 cut(s) 177, 199
SlaI CTCGAG 1 cut(s) 1035
SmlI CTYRAG 3 cut(s) 265, 434, 1035
SmoI CTYRAG 3 cut(s) 265, 434, 1035
SsiI CCGC 7 cut(s) 27, 87, 417, 431, 465, 934, 1040
SspDI GGCGCC 1 cut(s) 83
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 153, 1143
StyD4I CCNGG 2 cut(s) 22, 1379
TaaI ACNGT 4 cut(s) 499, 822, 917, 1231
TaiI ACGT 3 cut(s) 77, 150, 330
TaqI TCGA 9 cut(s) 135, 222, 227, 275, 384, 1036, 1105, 1127, 1275
TaqII GACCGA 1 cut(s) 194
TatI WGTACW 1 cut(s) 288
TauI GCSGC 3 cut(s) 89, 433, 1043
TfiI GAWTC 5 cut(s) 224, 386, 893, 1151, 1330
Tru1I TTAA 7 cut(s) 186, 282, 630, 645, 944, 1184, 1352
Tru9I TTAA 7 cut(s) 186, 282, 630, 645, 944, 1184, 1352
TscAI CASTG 4 cut(s) 213, 328, 352, 1050
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 6 cut(s) 23, 162, 225, 378, 1259, 1259
TspGWI ACGGA 2 cut(s) 788, 798
TspRI CASTG 4 cut(s) 213, 328, 352, 1050
VpaK11BI GGWCC 2 cut(s) 177, 199
XapI RAATTY 3 cut(s) 39, 215, 696
XceI RCATGY 1 cut(s) 761
XhoI CTCGAG 1 cut(s) 1035
XmiI GTMKAC 1 cut(s) 1065
XspI CTAG 2 cut(s) 153, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.