Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007808

Physical Location & Seq

Genomic Coordinates Reverse (-)

3029817 .. 3030077

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGAGGCCCGCAAGTCTCTAGTTGGCGACATCGGCTCCATTCAGAGGGTTTTTTATTTCCTTGAGGTGTGGGGTTTTATCAATTACATTCATTTCGCGCTAAACAAACCCCTCAAGTGGGAGGACAACAACAAGGCTGCTAGTGCTTCTTCTAATGGAGGCGGTGAATCCCCCGCCTACGGTGCCAATGAGAGCCCCAAGAAGATAACCTGCAATGGCTGCAAGTCTGTTTGCAGCATTGCCTCAACTATGGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

87

Amino Acids

9.35

Weight (kDa)

7.69

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33610
fragaria_vesca	FvH4_3g02280
malus_domestica	MD00G1206800.v1.1 MD05G1344100.v1.1 MD10G1320100.v1.1
prunus_persica	Prupe.4G022300_v2.0.a1 Prupe.5G005400_v2.0.a1
pyrus_communis	pycom05g31350 pycom17g04440
rosa_chinensis	RchiOBHm_Chr5g0003401
rosa_laevigata	RLG00000031136
rosa_multiflora	Rmu_co8020548.1_g000001 Rmu_sc0002963.1_g000013 Rmu_sc0009787.1_g000018 Rmu_sc0023940.1_g000003 Rmu_sc0030755.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072600 Rroxscaffold_1G00072620
rosa_rugosa	Rorug04G0403100
rosa_samantha	Rh5AG029700 Rh5BG029100 Rh5CG031900 Rh5DG029600
rosa_wichuraiana	Rw5G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	182
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	10, 162, 174
AfiI	CCNNNNNNNGG	4 cut(s)	45, 117, 118, 179
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	137, 219, 234
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	197
BbvI	GCAGC	3 cut(s)	124, 206, 246
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	20, 141
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	3 cut(s)	138, 220, 235
BlsI	GCNGC	3 cut(s)	139, 221, 236
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	37, 184
BpuEI	CTTGAG	2 cut(s)	83, 98
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 117, 118, 179
Bse3DI	GCAATG	2 cut(s)	220, 237
BseLI	CCNNNNNNNGG	4 cut(s)	45, 117, 118, 179
BseMI	GCAATG	2 cut(s)	220, 237
BseXI	GCAGC	3 cut(s)	124, 206, 246
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	182
BslI	CCNNNNNNNGG	4 cut(s)	45, 117, 118, 179
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	197
BspACI	CCGC	3 cut(s)	10, 162, 174
BspANI	GGCC	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	37, 184
BspMI	ACCTGC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	220, 237
Bst4CI	ACNGT	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 143, 182, 219
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	124, 206, 246
BsuRI	GGCC	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	7
CviJI	RGCY	5 cut(s)	8, 36, 137, 195, 219
CviKI_1	RGCY	5 cut(s)	8, 36, 137, 195, 219
Eco24I	GRGCYC	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	197
FaiI	YATR	1 cut(s)	251
FauI	CCCGC	2 cut(s)	17, 181
Fnu4HI	GCNGC	3 cut(s)	138, 220, 235
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	138, 220, 235
FspBI	CTAG	2 cut(s)	20, 141
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	138, 220, 235
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	213, 222, 234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 143, 182, 219
HspAI	GCGC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	1 cut(s)	223
Lsp1109I	GCAGC	3 cut(s)	124, 206, 246
MaeI	CTAG	2 cut(s)	20, 141
MboII	GAAGA	2 cut(s)	141, 214
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	82
MnlI	CCTC	6 cut(s)	39, 58, 115, 122, 152, 253
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	4 cut(s)	33, 143, 182, 219
NlaIV	GGNNCC	2 cut(s)	37, 184
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	139, 221, 236
PspN4I	GGNNCC	2 cut(s)	37, 184
PspPI	GGNCC	1 cut(s)	7
SatI	GCNGC	3 cut(s)	138, 220, 235
Sau96I	GGNCC	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	2 cut(s)	69, 212
SmlI	CTYRAG	2 cut(s)	62, 113
SmoI	CTYRAG	2 cut(s)	62, 113
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	3 cut(s)	10, 162, 174
SspMI	CTAG	2 cut(s)	20, 141
TaaI	ACNGT	1 cut(s)	182
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	137, 219, 234
TspDTI	ATGAA	1 cut(s)	80
XspI	CTAG	2 cut(s)	20, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.