Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8020548.1

Orthogroup ID

OG0007808

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 512

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8020548.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 511 bp

atgactctatgtgcaagatgttatgttcgtgggaactatcagattggtgtgaattcttcggattttagaagggttgagattaatgaggagactggggatggttgggcagatagagacacattgcatttgctagaagcactcatgcattatggcgatgattgggggaaggttgcgcaacatgttggtagaagcgagaaggaatgtgtggctcacttcctcaagcttccttttgctgataaaccgatagatgatttggattccgagaggttggatggtagtggtgtgagtccgttgaaggaggggaatggggatgatgaggttggtttggagagtaagaggatgcgtctcacgcctcttgcggatgccagcaacccgatcatggctcagactgcgtttctgtctgccttggcgggtgtaaaggctgcagaagctgctgctcgtgctgctgtgacaaccctgtgtgaggcggattatgaaacaagtaggatgagtgttggacctcggggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

170

Amino Acids

18.46

Weight (kDa)

4.9

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33610
fragaria_vesca	FvH4_3g02280
malus_domestica	MD00G1206800.v1.1 MD05G1344100.v1.1 MD10G1320100.v1.1
prunus_persica	Prupe.4G022300_v2.0.a1 Prupe.5G005400_v2.0.a1
pyrus_communis	pycom05g31350 pycom17g04440
rosa_chinensis	RchiOBHm_Chr5g0003401
rosa_laevigata	RLG00000031136
rosa_multiflora	Rmu_co8020548.1_g000001 Rmu_sc0002963.1_g000013 Rmu_sc0009787.1_g000018 Rmu_sc0023940.1_g000003 Rmu_sc0030755.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072600 Rroxscaffold_1G00072620
rosa_rugosa	Rorug04G0403100
rosa_samantha	Rh5AG029700 Rh5BG029100 Rh5CG031900 Rh5DG029600
rosa_wichuraiana	Rw5G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	174
AciI	CCGC	3 cut(s)	359, 410, 467
AcsI	RAATTY	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	379, 463
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	2 cut(s)	223, 431
AluI	AGCT	2 cut(s)	223, 431
Alw26I	GTCTC	3 cut(s)	83, 108, 350
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	501
ApeKI	GCWGC	4 cut(s)	422, 431, 434, 443
ApoI	RAATTY	1 cut(s)	52
AseI	ATTAAT	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	409, 418, 421, 430
BccI	CCATC	2 cut(s)	92, 266
BcoDI	GTCTC	3 cut(s)	83, 108, 350
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	4 cut(s)	423, 432, 435, 444
BlsI	GCNGC	4 cut(s)	424, 433, 436, 445
Bme18I	GGWCC	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	497
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	330, 352
BmuI	ACTGGG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	405, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 463
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	405, 500
BseGI	GGATG	6 cut(s)	103, 277, 316, 345, 367, 492
BseLI	CCNNNNNNNGG	2 cut(s)	379, 463
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	4 cut(s)	409, 418, 421, 430
BsiHKCI	CYCGRG	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	379, 463
BsmAI	GTCTC	3 cut(s)	83, 108, 350
BsmBI	CGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	501
Bsp143I	GATC	1 cut(s)	375
BspACI	CCGC	3 cut(s)	359, 410, 467
BspCNI	CTCAG	1 cut(s)	397
BspMAI	CTGCAG	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	405, 500
BssMI	GATC	1 cut(s)	375
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	6 cut(s)	103, 277, 316, 345, 367, 492
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	378
BstMAI	GTCTC	3 cut(s)	83, 108, 350
BstMBI	GATC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	6 cut(s)	349, 389, 428, 431, 440, 443
BstNSI	RCATGY	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	4 cut(s)	409, 418, 421, 430
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	6 cut(s)	103, 277, 316, 345, 367, 492
Cac8I	GCNNGC	1 cut(s)	367
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	497
CseI	GACGC	1 cut(s)	332
CviAII	CATG	3 cut(s)	142, 179, 379
CviJI	RGCY	5 cut(s)	209, 223, 383, 422, 431
CviKI_1	RGCY	5 cut(s)	209, 223, 383, 422, 431
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	501
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	3 cut(s)	145, 182, 382
FaiI	YATR	7 cut(s)	10, 24, 143, 150, 180, 380, 474
FatI	CATG	3 cut(s)	141, 178, 378
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	423, 432, 435, 444
FokI	GGATG	6 cut(s)	110, 284, 323, 352, 374, 499
Fsp4HI	GCNGC	4 cut(s)	423, 432, 435, 444
FspBI	CTAG	1 cut(s)	131
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	4 cut(s)	423, 432, 435, 444
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	145, 182, 382
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	3 cut(s)	4, 257, 286
Hpy188I	TCNGA	4 cut(s)	42, 61, 262, 387
HpyAV	CCTTC	4 cut(s)	63, 160, 190, 289
HpyCH4V	TGCA	4 cut(s)	14, 124, 145, 425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	349, 389, 428, 431, 440, 443
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	145, 182, 382
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	375
LpnPI	CCDG	3 cut(s)	78, 379, 470
Lsp1109I	GCAGC	4 cut(s)	409, 418, 421, 430
LweI	GCATC	2 cut(s)	330, 352
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	1 cut(s)	48
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	249, 475
MnlI	CCTC	9 cut(s)	79, 227, 258, 292, 310, 330, 363, 457, 510
Mph1103I	ATGCAT	1 cut(s)	147
MseI	TTAA	1 cut(s)	81
MwoI	GCNNNNNNNGC	6 cut(s)	349, 389, 428, 431, 440, 443
NdeII	GATC	1 cut(s)	375
NlaIII	CATG	3 cut(s)	145, 182, 382
NmuCI	GTSAC	1 cut(s)	448
NsbI	TGCGCA	1 cut(s)	174
NsiI	ATGCAT	1 cut(s)	147
NspI	RCATGY	1 cut(s)	182
PciI	ACATGT	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	424, 433, 436, 445
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PscI	ACATGT	1 cut(s)	178
PshBI	ATTAAT	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	4 cut(s)	423, 432, 435, 444
Sau3AI	GATC	1 cut(s)	375
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	295
SetI	ASST	6 cut(s)	171, 225, 269, 321, 433, 502
SfaNI	GCATC	2 cut(s)	330, 352
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	3 cut(s)	359, 410, 467
SspMI	CTAG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	405
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	4 cut(s)	422, 431, 434, 443
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	497
VspI	ATTAAT	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.