pycom05g31350
MYB Family

SWI SNF complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
31106856 .. 31108531
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31350.2

Sequence Viewer

Length: 1431 bp
ATGGCTACCAAATCAGCGGCCCAAGACCTCTCCTCCTCCGACACCCCATCCAAACCCCCACCCACTCCTCTTCCGATCCCCGCCAATCCCGAGACTCCGACCACCGCCGCTCCCCGCCATCCTCAACCGCGTCCCACCTCCGACGCCGACGTCATCCACGTCCCCAGCTATTCCAGCTGGTTCTCGCCGGACCACATCCACCACTGCGAGGTCCGATTCCTCCCCGAGTTCTTCGATTCTCGATCCCCTTCGAAAAACCCTACCCTCTACAAGTACTACCGCAACACCATCGTCGCCCAATCCAGGGCCGTCAACCCTTCTCGGAAGCTCACCTTCACGGAGGCCCGCAAGTCTCTCGTCGGCGACGTCGGCTCCGTTCGGAGGGTTTTCGATTTCCTCGAGGCGTGGGGTTTGATCAATTACACTCCTTCCGCGCTCAACAAGCCCCTCAAGTGGGAGGACAAGGACAGCAGCAAGGCCGCCGGTGCTTCCTCTAATGGAGGCGCTGAATCCCCCGCCGTCGGTGCCAAGGAGAACCCCAAGAAGAGGACCTGCAATGGCTGCAAGTCTGTTTGCAGCATTGCCTGCTTTGTTTCCGAAAAGAATGACATGACTCTATGTGCAAGGTGCTATGTTCGCGGAAACTATCAGATGGGCATAAGTTCTTCCGATTTCAGGCGGGTTGAGATCAATGAAGAGATGGGGAGTGGCTGGGCTGATAAAGATACTCTGCATCTTCTAGAGGCCCTTATGCATTATGGCGACGACTGGAGGAAGGTTGCGCAACATGTTGGTAGAAGCGAGAAGGAATGTGTTGCTCATTTCCTCAAGATTCCTTTCGGTGAGGAATTTTCTGACAATGCAGGTGATGCTGAATGTGCGTTGGAGGGTGATGGTGATGGTACAACACCGTCTCTAAGTAAAAGAATGCGTCTCACGCCTCTTGCGGATGCAAGCAACCCAATTATGGCTCAGGCGGCCTTTCTGTCAGCTCTGGCGGGCGTGCAGGTTGCAGAGGCTGCTGCTTCTGCTGCTGTAACAGCGCTGTGTGAGGCGGATTATGAAACAAGCAAAATGAGTGTTACATCTCTGGCTTCGAATGCAAGACAGCATGAAACTGATGCTGTATTAAACGGAGACGATAAAACTGACCCGGATGCACTGGGGGCAGCTTTTGTAGATGCAAATTCACAGCTTGAGAAGGAAGGGCTGGACGTGGGAAGAGCAATCTCTGGGATTACAGAGGTACAGATGAGAGAAATCCGAAAGAAGATCATCCGTTTCGAGGCGTTAGATTTGCAGATGGAGAAAGAGTGGGAACAACTGGAGCAAATGAAAAGCATGCTCTTTGTCGATCAGATGACACTTTTGTTAAACAAAAGTTCTGCACCAAAAACTGCGGCGGAGGAGAAGAGTGTAAAAGCGGATTGA

Protein Analysis

477

Amino Acids

51.92

Weight (kDa)

5.54

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 854
AasI GACNNNNNNGTC 1 cut(s) 149
AatII GACGTC 2 cut(s) 153, 369
AbsI CCTCGAGG 1 cut(s) 398
Acc16I TGCGCA 1 cut(s) 783
Acc36I ACCTGC 3 cut(s) 560, 854, 997
AccB1I GGYRCC 1 cut(s) 524
AccBSI CCGCTC 1 cut(s) 110
AccII CGCG 3 cut(s) 130, 434, 639
AclWI GGATC 2 cut(s) 70, 237
AcsI RAATTY 2 cut(s) 848, 1186
AcyI GRCGYC 3 cut(s) 144, 150, 366
AfaI GTAC 3 cut(s) 275, 904, 1248
AfeI AGCGCT 1 cut(s) 1044
AflIII ACRYGT 1 cut(s) 787
AjiI CACGTC 2 cut(s) 160, 1216
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 6 cut(s) 168, 177, 328, 992, 1172, 1195
AluI AGCT 6 cut(s) 168, 177, 328, 992, 1172, 1195
Alw26I GTCTC 5 cut(s) 86, 357, 918, 938, 1131
AlwI GGATC 2 cut(s) 70, 237
AlwNI CAGNNNCTG 1 cut(s) 1019
Ama87I CYCGRG 3 cut(s) 89, 224, 398
Aor51HI AGCGCT 1 cut(s) 1044
AoxI GGCC 6 cut(s) 18, 306, 342, 477, 744, 978
ApeKI GCWGC 7 cut(s) 471, 561, 576, 1019, 1022, 1031, 1169
ApoI RAATTY 2 cut(s) 848, 1186
AspLEI GCGC 4 cut(s) 436, 506, 784, 1045
AspS9I GGNCC 7 cut(s) 19, 190, 211, 306, 343, 549, 745
AsuC2I CCSGG 1 cut(s) 1154
AsuHPI GGTGA 5 cut(s) 322, 854, 878, 902, 908
AsuII TTCGAA 2 cut(s) 251, 1097
AvaI CYCGRG 3 cut(s) 89, 224, 398
AvaII GGWCC 3 cut(s) 190, 211, 549
BanI GGYRCC 1 cut(s) 524
BbvI GCAGC 7 cut(s) 483, 548, 588, 1006, 1009, 1018, 1181
BccI CCATC 8 cut(s) 55, 126, 296, 646, 694, 887, 893, 1297
BceAI ACGGC 2 cut(s) 293, 503
BcgI CGANNNNNNTGC 4 cut(s) 271, 305, 337, 371
BciT130I CCWGG 1 cut(s) 304
BclI TGATCA 1 cut(s) 414
BcnI CCSGG 1 cut(s) 1154
BcoDI GTCTC 5 cut(s) 86, 357, 918, 938, 1131
BfaI CTAG 1 cut(s) 740
BfoI RGCGCY 2 cut(s) 507, 1046
BfuAI ACCTGC 3 cut(s) 560, 854, 997
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 2 cut(s) 304, 1154
Bme18I GGWCC 3 cut(s) 190, 211, 549
BmeT110I CYCGRG 3 cut(s) 89, 224, 398
BmgBI CACGTC 2 cut(s) 160, 1216
BmgT120I GGNCC 7 cut(s) 19, 190, 211, 306, 343, 549, 745
BmiI GGNNCC 2 cut(s) 373, 526
BmrFI CCNGG 2 cut(s) 304, 1154
BmrI ACTGGG 1 cut(s) 1172
BmsI GCATC 6 cut(s) 742, 859, 940, 1111, 1147, 1171
BmuI ACTGGG 1 cut(s) 1172
BpmI CTGGAG 2 cut(s) 790, 1346
Bpu10I CCTNAGC 1 cut(s) 972
Bpu14I TTCGAA 2 cut(s) 251, 1097
BpuEI CTTGAG 3 cut(s) 434, 812, 1217
BpuMI CCSGG 1 cut(s) 1154
BsaHI GRCGYC 3 cut(s) 144, 150, 366
BsaJI CCNNGG 2 cut(s) 303, 528
BsaXI ACNNNNNCTCC 8 cut(s) 17, 47, 94, 124, 356, 386, 1298, 1328
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 3 cut(s) 773, 1167, 1329
Bse3DI GCAATG 2 cut(s) 562, 579
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 303, 528
BseGI GGATG 7 cut(s) 47, 118, 153, 195, 955, 1162, 1275
BseMI GCAATG 2 cut(s) 562, 579
BseMII CTCAG 1 cut(s) 986
BseNI ACTGG 3 cut(s) 773, 1167, 1329
BseRI GAGGAG 4 cut(s) 22, 25, 57, 1421
BseXI GCAGC 7 cut(s) 483, 548, 588, 1006, 1009, 1018, 1181
BseYI CCCAGC 2 cut(s) 164, 711
BsgI GTGCAG 2 cut(s) 1025, 1371
Bsh1236I CGCG 3 cut(s) 130, 434, 639
BshFI GGCC 6 cut(s) 20, 308, 344, 479, 746, 980
BshNI GGYRCC 1 cut(s) 524
BsiHKCI CYCGRG 3 cut(s) 89, 224, 398
BsiSI CCGG 3 cut(s) 188, 483, 1154
BslFI GGGAC 2 cut(s) 117, 146
BsmAI GTCTC 5 cut(s) 86, 357, 918, 938, 1131
BsmBI CGTCTC 3 cut(s) 918, 938, 1131
BsmFI GGGAC 2 cut(s) 117, 146
BsmI GAATGC 2 cut(s) 933, 1105
BsnI GGCC 6 cut(s) 20, 308, 344, 479, 746, 980
BsoBI CYCGRG 3 cut(s) 89, 224, 398
Bsp119I TTCGAA 2 cut(s) 251, 1097
Bsp143I GATC 6 cut(s) 75, 242, 414, 687, 1272, 1354
BspANI GGCC 6 cut(s) 20, 308, 344, 479, 746, 980
BspCNI CTCAG 1 cut(s) 985
BspFNI CGCG 3 cut(s) 130, 434, 639
BspLI GGNNCC 2 cut(s) 373, 526
BspMI ACCTGC 3 cut(s) 560, 854, 997
BspPI GGATC 2 cut(s) 70, 237
BspQI GCTCTTC 1 cut(s) 1216
BspT104I TTCGAA 2 cut(s) 251, 1097
BspT107I GGYRCC 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 562, 579
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 3 cut(s) 773, 1167, 1329
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 303, 528
BssMI GATC 6 cut(s) 75, 242, 414, 687, 1272, 1354
BssNI GRCGYC 3 cut(s) 144, 150, 366
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 912
Bst6I CTCTTC 5 cut(s) 75, 539, 690, 1216, 1406
BstACI GRCGYC 3 cut(s) 144, 150, 366
BstAPI GCANNNNNTGC 4 cut(s) 561, 585, 869, 1019
BstBI TTCGAA 2 cut(s) 251, 1097
BstC8I GCNNGC 6 cut(s) 346, 586, 955, 1000, 1004, 1343
BstDEI CTNAG 2 cut(s) 917, 972
BstF5I GGATG 7 cut(s) 47, 118, 153, 195, 955, 1162, 1275
BstFNI CGCG 3 cut(s) 130, 434, 639
BstH2I RGCGCY 2 cut(s) 507, 1046
BstHHI GCGC 4 cut(s) 436, 506, 784, 1045
BstKTI GATC 6 cut(s) 78, 245, 417, 690, 1275, 1357
BstMAI GTCTC 5 cut(s) 86, 357, 918, 938, 1131
BstMBI GATC 6 cut(s) 75, 242, 414, 687, 1272, 1354
BstNI CCWGG 1 cut(s) 304
BstNSI RCATGY 2 cut(s) 791, 1345
BstSCI CCNGG 2 cut(s) 302, 1152
BstUI CGCG 3 cut(s) 130, 434, 639
BstV1I GCAGC 7 cut(s) 483, 548, 588, 1006, 1009, 1018, 1181
BsuRI GGCC 6 cut(s) 20, 308, 344, 479, 746, 980
BtrI CACGTC 2 cut(s) 160, 1216
BtsCI GGATG 7 cut(s) 47, 118, 153, 195, 955, 1162, 1275
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 202, 1160
BveI ACCTGC 3 cut(s) 560, 854, 997
Cac8I GCNNGC 6 cut(s) 346, 586, 955, 1000, 1004, 1343
CaiI CAGNNNCTG 1 cut(s) 1019
CfoI GCGC 4 cut(s) 436, 506, 784, 1045
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 7 cut(s) 19, 190, 211, 306, 343, 549, 745
CseI GACGC 3 cut(s) 119, 152, 920
Csp6I GTAC 3 cut(s) 274, 903, 1247
CviAII CATG 4 cut(s) 610, 788, 1112, 1342
CviQI GTAC 3 cut(s) 274, 903, 1247
DdeI CTNAG 2 cut(s) 917, 972
DpnI GATC 6 cut(s) 77, 244, 416, 689, 1274, 1356
DpnII GATC 6 cut(s) 75, 242, 414, 687, 1272, 1354
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eam1104I CTCTTC 5 cut(s) 75, 539, 690, 1216, 1406
EarI CTCTTC 5 cut(s) 75, 539, 690, 1216, 1406
EciI GGCGGA 2 cut(s) 1070, 1418
Eco130I CCWWGG 1 cut(s) 528
Eco47I GGWCC 3 cut(s) 190, 211, 549
Eco47III AGCGCT 1 cut(s) 1044
Eco88I CYCGRG 3 cut(s) 89, 224, 398
EcoO109I RGGNCCY 2 cut(s) 549, 745
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 528
EcoT22I ATGCAT 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 528
Esp3I CGTCTC 3 cut(s) 918, 938, 1131
FaeI CATG 4 cut(s) 613, 791, 1115, 1345
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 2 cut(s) 117, 146
FatI CATG 4 cut(s) 609, 787, 1111, 1341
FauI CCCGC 6 cut(s) 88, 122, 353, 523, 672, 991
FbaI TGATCA 1 cut(s) 414
FokI GGATG 7 cut(s) 34, 105, 140, 182, 962, 1169, 1262
FspBI CTAG 1 cut(s) 740
FspI TGCGCA 1 cut(s) 783
GlaI GCGC 4 cut(s) 435, 505, 783, 1044
GsaI CCCAGC 2 cut(s) 168, 715
GsuI CTGGAG 2 cut(s) 790, 1346
HaeII RGCGCY 2 cut(s) 507, 1046
HaeIII GGCC 6 cut(s) 20, 308, 344, 479, 746, 980
HapII CCGG 3 cut(s) 188, 483, 1154
HgaI GACGC 3 cut(s) 119, 152, 920
HhaI GCGC 4 cut(s) 436, 506, 784, 1045
Hin1I GRCGYC 3 cut(s) 144, 150, 366
Hin1II CATG 4 cut(s) 613, 791, 1115, 1345
Hin6I GCGC 4 cut(s) 434, 504, 782, 1043
HinP1I GCGC 4 cut(s) 434, 504, 782, 1043
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 6 cut(s) 94, 216, 236, 509, 613, 832
HpaII CCGG 3 cut(s) 188, 483, 1154
HphI GGTGA 5 cut(s) 322, 854, 878, 902, 908
Hpy166II GTNNAC 1 cut(s) 313
Hpy188III TCNNGA 4 cut(s) 89, 240, 740, 829
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 8 cut(s) 146, 152, 296, 362, 368, 371, 524, 767
HpyAV CCTTC 8 cut(s) 258, 327, 343, 438, 769, 799, 1195, 1199
HpyCH4III ACNGT 1 cut(s) 912
HpyCH4IV ACGT 4 cut(s) 150, 159, 366, 1215
HpyF3I CTNAG 2 cut(s) 917, 972
HpySE526I ACGT 4 cut(s) 150, 159, 366, 1215
Hsp92I GRCGYC 3 cut(s) 144, 150, 366
Hsp92II CATG 4 cut(s) 613, 791, 1115, 1345
HspAI GCGC 4 cut(s) 434, 504, 782, 1043
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 6 cut(s) 75, 242, 414, 687, 1272, 1354
LguI GCTCTTC 1 cut(s) 1216
LmnI GCTCC 3 cut(s) 115, 377, 1327
Lsp1109I GCAGC 7 cut(s) 483, 548, 588, 1006, 1009, 1018, 1181
LweI GCATC 6 cut(s) 742, 859, 940, 1111, 1147, 1171
MaeI CTAG 1 cut(s) 740
MaeII ACGT 4 cut(s) 150, 159, 366, 1215
MaeIII GTNAC 2 cut(s) 1036, 1081
MalI GATC 6 cut(s) 77, 244, 416, 689, 1274, 1356
MbiI CCGCTC 1 cut(s) 110
MboI GATC 6 cut(s) 75, 242, 414, 687, 1272, 1354
MboII GAAGA 9 cut(s) 62, 223, 556, 657, 707, 728, 1233, 1282, 1423
MluCI AATT 4 cut(s) 418, 848, 963, 1186
MlyI GAGTC 2 cut(s) 88, 607
MmeI TCCRAC 4 cut(s) 63, 122, 165, 864
Mph1103I ATGCAT 1 cut(s) 756
MseI TTAA 2 cut(s) 1130, 1373
MspA1I CMGCKG 2 cut(s) 17, 177
MspI CCGG 3 cut(s) 188, 483, 1154
MspR9I CCNGG 2 cut(s) 304, 1154
Mva1269I GAATGC 2 cut(s) 933, 1105
MvaI CCWGG 1 cut(s) 304
MvnI CGCG 3 cut(s) 130, 434, 639
NciI CCSGG 1 cut(s) 1154
NdeII GATC 6 cut(s) 75, 242, 414, 687, 1272, 1354
NlaIII CATG 4 cut(s) 613, 791, 1115, 1345
NlaIV GGNNCC 2 cut(s) 373, 526
NsbI TGCGCA 1 cut(s) 783
NsiI ATGCAT 1 cut(s) 756
NspI RCATGY 2 cut(s) 791, 1345
NspV TTCGAA 2 cut(s) 251, 1097
PaeI GCATGC 1 cut(s) 1345
PaeR7I CTCGAG 1 cut(s) 398
PaqCI CACCTGC 1 cut(s) 854
PciI ACATGT 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 1216
PcsI WCGNNNNNNNCGW 4 cut(s) 156, 363, 372, 396
PctI GAATGC 2 cut(s) 933, 1105
PfeI GAWTC 4 cut(s) 216, 236, 509, 832
PleI GAGTC 2 cut(s) 88, 607
PpsI GAGTC 2 cut(s) 88, 607
PpuMI RGGWCCY 1 cut(s) 549
PscI ACATGT 1 cut(s) 787
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 302
PspFI CCCAGC 2 cut(s) 164, 711
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 373, 526
PspPI GGNCC 7 cut(s) 19, 190, 211, 306, 343, 549, 745
PspPPI RGGWCCY 1 cut(s) 549
PspXI VCTCGAGB 1 cut(s) 398
PstNI CAGNNNCTG 1 cut(s) 1019
PvuII CAGCTG 1 cut(s) 177
RsaI GTAC 3 cut(s) 275, 904, 1248
RsaNI GTAC 3 cut(s) 274, 903, 1247
SapI GCTCTTC 1 cut(s) 1216
SaqAI TTAA 2 cut(s) 1130, 1373
Sau3AI GATC 6 cut(s) 75, 242, 414, 687, 1272, 1354
Sau96I GGNCC 7 cut(s) 19, 190, 211, 306, 343, 549, 745
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 2 cut(s) 88, 607
ScrFI CCNGG 2 cut(s) 304, 1154
SfaNI GCATC 6 cut(s) 742, 859, 940, 1111, 1147, 1171
Sfr274I CTCGAG 1 cut(s) 398
SfuI TTCGAA 2 cut(s) 251, 1097
SgrAI CRCCGGYG 1 cut(s) 482
SinI GGWCC 3 cut(s) 190, 211, 549
SlaI CTCGAG 1 cut(s) 398
SmlI CTYRAG 4 cut(s) 398, 449, 827, 1196
SmoI CTYRAG 4 cut(s) 398, 449, 827, 1196
SphI GCATGC 1 cut(s) 1345
Sse9I AATT 4 cut(s) 418, 848, 963, 1186
SspMI CTAG 1 cut(s) 740
StyD4I CCNGG 2 cut(s) 302, 1152
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 912
TaiI ACGT 4 cut(s) 153, 162, 369, 1218
TaqI TCGA 8 cut(s) 234, 241, 251, 390, 399, 1097, 1284, 1353
TasI AATT 4 cut(s) 418, 848, 963, 1186
TatI WGTACW 1 cut(s) 273
TauI GCSGC 5 cut(s) 20, 110, 482, 980, 1403
TfiI GAWTC 4 cut(s) 216, 236, 509, 832
Tru1I TTAA 2 cut(s) 1130, 1373
Tru9I TTAA 2 cut(s) 1130, 1373
TscAI CASTG 2 cut(s) 209, 1167
TseI GCWGC 7 cut(s) 471, 561, 576, 1019, 1022, 1031, 1169
TspDTI ATGAA 4 cut(s) 708, 1077, 1128, 1349
TspGWI ACGGA 4 cut(s) 353, 364, 1149, 1268
TspRI CASTG 2 cut(s) 209, 1167
VpaK11BI GGWCC 3 cut(s) 190, 211, 549
XapI RAATTY 2 cut(s) 848, 1186
XbaI TCTAGA 1 cut(s) 739
XceI RCATGY 2 cut(s) 791, 1345
XhoI CTCGAG 1 cut(s) 398
XspI CTAG 1 cut(s) 740
ZraI GACGTC 2 cut(s) 151, 367
ZrmI AGTACT 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.