AT2G34200

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013321
Physical Location & Seq
Forward (+)
14440433 .. 14442054
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34200.1

Sequence Viewer

Length: 669 bp
ATGGACCCTAAAAGTTGTGAGAATTCGAGTGATGTTAAGGGTCAGACCAGTGACTCTGTATCAAAAAAGGTGTTGATTGAGGAAGAGGAAGATGTAAAGAAACCACAACAGGGAAAAGAAAATGATTCAAGAATGGCCAAAGATGTTGTTAGTTGCAGTAGTAACATTTCAGCTCATGTTGTTCATGAGGAAGTTGCGGATAATGTTACTGCGGTAAGCTGCAACGAGGCAGAGAGTGATATATCGAAAGCAAAGGCGAAGGAGTTCCACACTATTGATTTGAGTGGTGTAGGAGAAAGAATCTGTAGGATTTGTCATTTTGGTTCTGATCAATCACCTGAGGCTTCTGGTGATGATAAGTCAGTAAGTCCGGAGTTGATTGAGATTGGTTGCAAATGTAAAAACGAGCTTGGCCTTGCACATTTCCATTGCGCTGAAGCCTGGTTCAAGTTAAGAGGAAACAGTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAAGGTTGATGGAGGATTGGAGCGGCGAAAGAGACAATACATTGGATGGGAGAAGAAGACGAGGAAGAGGACAATCTTGCTGCATCTTTATGGTTTTTCTGCTCACTATCCTTTTGCTTCATTGGTTTTTCAAAAAGATTAGTGGTTACTACCAAAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

222

Amino Acids

24.66

Weight (kDa)

5.69

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 102 - 160 2.9e-07 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34200 AT2G34200
fragaria_vesca FvH4_3g07460
malus_domestica MD10G1277000.v1.1
prunus_persica Prupe.4G064900_v2.0.a1 Prupe.4G064900_v2.0.a1
pyrus_communis pycom05g27540 pycom10g23130
rosa_chinensis RchiOBHm_Chr5g0011391
rosa_laevigata RLG00000031829
rosa_multiflora Rmu_sc0009975.1_g000013
rosa_roxburghii Rroxscaffold_1G00065060
rosa_rugosa Rorug04G0456800
rosa_samantha Rh5AG088500 Rh5BG083600 Rh5CG096900 Rh5DG083500
rosa_wichuraiana Rw5G007680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 4 cut(s) 197, 212, 480, 528
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 456
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 3 cut(s) 129, 448, 637
AjnI CCWGG 1 cut(s) 440
AluBI AGCT 3 cut(s) 173, 219, 409
AluI AGCT 3 cut(s) 173, 219, 409
Alw26I GTCTC 1 cut(s) 531
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 2 cut(s) 135, 412
ApeKI GCWGC 2 cut(s) 219, 585
ApoI RAATTY 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 327, 362
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 339
BalI TGGCCA 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 568
BbvI GCAGC 2 cut(s) 206, 572
BccI CCATC 2 cut(s) 508, 545
BciT130I CCWGG 1 cut(s) 442
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 304
BisI GCNGC 3 cut(s) 220, 529, 586
BlsI GCNGC 3 cut(s) 221, 530, 587
Bme1390I CCNGG 1 cut(s) 442
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 568
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 48
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 427
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 1 cut(s) 442
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 206, 572
BshFI GGCC 2 cut(s) 137, 414
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 531
BsnI GGCC 2 cut(s) 137, 414
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 4 cut(s) 197, 212, 480, 528
BspANI GGCC 2 cut(s) 137, 414
BspCNI CTCAG 1 cut(s) 331
BspEI TCCGGA 1 cut(s) 370
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 6
BsrBI CCGCTC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 427
BsrI ACTGG 1 cut(s) 48
BssMI GATC 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 2 cut(s) 464, 505
Bst6I CTCTTC 2 cut(s) 78, 565
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 440
BstSFI CTRYAG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 206, 572
BstV2I GAAGAC 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 2 cut(s) 137, 414
BtsCI GGATG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 55, 469
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 176, 185
CviJI RGCY 7 cut(s) 137, 173, 219, 344, 409, 414, 440
CviKI_1 RGCY 7 cut(s) 137, 173, 219, 344, 409, 414, 440
DdeI CTNAG 1 cut(s) 339
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 78, 565
EarI CTCTTC 2 cut(s) 78, 565
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 456
Eco81I CCTNAGG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 440
FaeI CATG 2 cut(s) 179, 188
FaiI YATR 4 cut(s) 177, 186, 242, 596
FatI CATG 2 cut(s) 175, 184
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 3 cut(s) 220, 529, 586
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 3 cut(s) 220, 529, 586
GlaI GCGC 1 cut(s) 433
GluI GCNGC 3 cut(s) 220, 529, 586
HaeIII GGCC 2 cut(s) 137, 414
HapII CCGG 1 cut(s) 371
HhaI GCGC 1 cut(s) 434
Hin1II CATG 2 cut(s) 179, 188
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HinfI GANTC 3 cut(s) 53, 125, 300
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 327, 362
Hpy188I TCNGA 2 cut(s) 45, 328
Hpy188III TCNNGA 3 cut(s) 129, 185, 371
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 464, 505
HpyCH4V TGCA 6 cut(s) 156, 222, 393, 419, 486, 588
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 2 cut(s) 179, 188
HspAI GCGC 1 cut(s) 432
Kpn2I TCCGGA 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 525
LpnPI CCDG 7 cut(s) 61, 95, 333, 351, 384, 427, 454
Lsp1109I GCAGC 2 cut(s) 206, 572
LweI GCATC 1 cut(s) 597
MaeIII GTNAC 5 cut(s) 50, 161, 205, 499, 650
MalI GATC 1 cut(s) 330
MbiI CCGCTC 1 cut(s) 528
MboI GATC 1 cut(s) 328
MboII GAAGA 6 cut(s) 95, 101, 505, 570, 573, 582
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 22
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 9 cut(s) 73, 79, 181, 220, 334, 449, 511, 560, 566
Mox20I TGGCCA 1 cut(s) 137
MroI TCCGGA 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 263
MscI TGGCCA 1 cut(s) 137
MseI TTAA 2 cut(s) 36, 452
MslI CAYNNNNRTG 1 cut(s) 593
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 442
MvaI CCWGG 1 cut(s) 442
NdeII GATC 1 cut(s) 328
NlaIII CATG 2 cut(s) 179, 188
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 50
PagI TCATGA 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 125, 300
PkrI GCNGC 3 cut(s) 221, 530, 587
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 2 cut(s) 36, 452
SatI GCNGC 3 cut(s) 220, 529, 586
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 442
SetI ASST 6 cut(s) 72, 175, 221, 340, 411, 512
SfaNI GCATC 1 cut(s) 597
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 593
Sse9I AATT 1 cut(s) 22
SsiI CCGC 4 cut(s) 197, 212, 480, 528
StyD4I CCNGG 1 cut(s) 440
TaaI ACNGT 2 cut(s) 464, 505
TaqI TCGA 2 cut(s) 26, 245
TasI AATT 1 cut(s) 22
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 2 cut(s) 125, 300
Tru1I TTAA 2 cut(s) 36, 452
Tru9I TTAA 2 cut(s) 36, 452
TscAI CASTG 2 cut(s) 55, 469
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 2 cut(s) 219, 585
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 173, 614
TspRI CASTG 2 cut(s) 55, 469
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.